# List of top-scoring protein chains for t04-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1p5zB 263 0.001990 c.37.1.1 87815 1z6gA 218 1.048 1ak2A 233 2.189 c.37.1.1,g.41.2.1 31894,45195 2hhjA 267 3.060 c.60.1.1 136497 4tmkA 213 3.149 c.37.1.1 31930 2p67A 341 3.325 1n4aA 252 3.534 c.92.2.2 85317 2j41A 207 4.517 3be4A 217 5.162 1n2zA 245 5.247 c.92.2.2 79865 1gtvA 214 6.030 c.37.1.1 70537 2ga8A 359 6.288 1akyA 220 7.065 c.37.1.1,g.41.2.1 31896,45197 2qt1A 207 7.198 2yvuA 186 7.840 2gzaA 361 7.865 1ki9A 192 8.212 c.37.1.1 84404 1np6A 174 8.304 c.37.1.10 85954 1nijA 318 8.453 c.37.1.10,d.237.1.1 85741,85742 2ccjA 205 8.700 1qf9A 194 9.761 c.37.1.1 31848 2qorA 204 9.852 1x6vA 630 9.881 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 2pbrA 195 10.94 1in4A 334 11.64 a.4.5.11,c.37.1.20 62597,62598 2phzA 311 12.61 1zpdA 568 12.74 c.31.1.3,c.36.1.5,c.36.1.9 31741,31785,31786 1xjcA 169 13.57 c.37.1.10 115387 2r7aA 256 14.84 1zinA 217 15.24 c.37.1.1,g.41.2.1 31915,45178 3c8uA 208 15.43 1ltqA 301 16.35 c.108.1.9,c.37.1.1 78208,78209 4xis 387 18.20 1of8A 370 18.47 c.1.10.4 92819 1p6xA 334 21.58 c.37.1.1 94195 2f1rA 171 22.66 1gg1A 350 22.70 c.1.10.4 29187 2p5tB 253 22.78 1efdN 266 24.08 c.92.2.1 35597 1ylhA 560 24.34 1e6cA 173 25.10 c.37.1.2 59296 2z0hA 197 25.22 1e2kA 331 26.04 c.37.1.1 31854 1znwA 207 27.09 c.37.1.1 125412 1kagA 173 27.49 c.37.1.2 72249 1ukzA 203 27.59 c.37.1.1 31840 2fh5B 214 28.14 c.37.1.8 133478 2bwjA 199 28.17 1ozhA 566 28.50 c.31.1.3,c.36.1.5,c.36.1.9 93833,93834,93835 2eyuA 261 29.70 1gqnA 252 31.59 c.1.10.1 90514 3b9pA 297 31.72 1knqA 175 31.78 c.37.1.17 72786 1st9A 143 34.32 c.47.1.10 98987 2c95A 196 34.42 2oqyA 391 34.44 1in6A 334 34.48 a.4.5.11,c.37.1.20 62601,62602 2axpA 173 34.64 c.37.1.1 127497 1qqqA 264 34.71 d.117.1.1 40931 1qfeA 252 35.15 c.1.10.1 29167 3b9qA 302 35.83 2q8pA 260 39.25 2vp4A 230 39.84 1z8fA 228 40.58 2o2gA 223 40.94 1q6zA 528 41.22 c.31.1.3,c.36.1.5,c.36.1.9 111655,111656,111657 1zi8A 236 41.87 1tq6A 413 41.89 c.37.1.8 107202 1pvdA 537 41.91 c.31.1.3,c.36.1.5,c.36.1.9 31737,31777,31778 1w44A 331 42.03 c.37.1.11 114147 1zuhA 168 42.88 1viaA 175 44.04 c.37.1.2 100754 1bkpA 278 44.26 d.117.1.1 41029 1htwA 158 45.27 c.37.1.18 71083 2cdnA 201 45.59 c.37.1.1 130289 2g1iA 563 45.62 1vplA 256 46.38 c.37.1.12 113966 1v7zA 260 46.50 c.125.1.1 100488 1qh8A 478 46.58 c.92.2.3 35633 2pzeA 229 47.53 1n8fA 350 47.73 c.1.10.4 85397 1gmlA 178 48.03 c.8.5.2 70273 1hvyA 288 49.99 d.117.1.1 41049 1g6oA 330 50.07 c.37.1.11 32430 1xel 338 52.96 2grjA 192 53.74 2yvtA 260 54.03 1xx6A 191 54.32 c.37.1.24,g.39.1.14 116139,116140 2qy9A 309 54.93 2ak3A 226 55.73 c.37.1.1,g.41.2.1 31892,45193 1ypvA 313 56.21 2qm8A 337 56.67 2vbfA 570 57.41 1yr2A 741 57.74 1ed8A 449 57.85 c.76.1.1 34988 1riiA 265 58.01 c.60.1.1 111807 1ukz 203 59.41 1m1nA 491 64.15 c.92.2.3 78417 2k3aA 155 64.59 2plrA 213 66.56 2r79A 283 66.78 1epxA 370 67.07 c.1.10.1 29150 2ze7A 253 67.49 2pt7A 330 67.66 1p3jA 217 67.72 c.37.1.1,g.41.2.1 94022,94023 1of1A 376 68.47 c.37.1.1 103924 1gz0A 253 68.69 c.116.1.1,d.79.3.3 76391,76392 2oap1 511 70.25 1yzyA 413 71.91 c.146.1.1 124292 2rgxA 206 72.78 1tib 269 74.01 1nksA 194 75.25 c.37.1.1 31886 1j3bA 529 75.55 c.91.1.1,c.109.1.1 77071,77072 1bf6A 291 75.76 c.1.9.3 29065 2vc7A 314 75.95 2pcjA 224 75.97 1xwiA 322 76.06 1ayl 541 76.15 2q62A 247 76.28 1bfd 528 78.64 3bh0A 315 78.78 1qhfA 240 78.99 c.60.1.1 33960 1qhxA 178 79.63 c.37.1.3 31936 2glfA 450 79.71 1xtnA 120 80.15 d.189.1.1 116028 2qw5A 335 82.49 2iyvA 184 82.66 c.37.1.2 137812 1e4yA 214 83.42 c.37.1.1,g.41.2.1 31901,45181 1fj2A 232 85.05 c.69.1.14 34720 2j5vA 367 85.26 1zin 217 85.61 3b8dA 363 86.99 2g8mA 264 87.87 1yeyA 444 88.55 c.1.11.2,d.54.1.1 116664,116665 2nwhA 317 89.13 1uj2A 252 89.43 c.37.1.6 99452 1f6bA 198 89.49 c.37.1.8 64986 1gky 187 89.67