# List of top-scoring protein chains for t04-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1p5zB 263 0.003145 c.37.1.1 87815 1z6gA 218 0.8349 2hhjA 267 1.468 c.60.1.1 136497 2j41A 207 1.577 4tmkA 213 1.843 c.37.1.1 31930 3be4A 217 3.057 4xis 387 3.126 2yw2A 424 3.299 1ak2A 233 3.349 c.37.1.1,g.41.2.1 31894,45195 2qt1A 207 4.226 2qorA 204 4.406 1n4aA 252 4.943 c.92.2.2 85317 2yvuA 186 4.982 2ga8A 359 5.034 1e9rA 437 5.950 c.37.1.11 64827 2axpA 173 6.451 c.37.1.1 127497 2ccjA 205 6.632 2cdnA 201 6.673 c.37.1.1 130289 2oap1 511 6.877 1np6A 174 8.008 c.37.1.10 85954 1x6vA 630 8.363 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 2pt7A 330 9.475 1akyA 220 10.15 c.37.1.1,g.41.2.1 31896,45197 1gtvA 214 10.16 c.37.1.1 70537 1n2zA 245 10.67 c.92.2.2 79865 3c86A 328 10.84 1ki9A 192 11.58 c.37.1.1 84404 1qf9A 194 11.98 c.37.1.1 31848 1tq6A 413 12.20 c.37.1.8 107202 1ozhA 566 13.20 c.31.1.3,c.36.1.5,c.36.1.9 93833,93834,93835 2gzaA 361 13.80 2pbrA 195 14.35 2eu8A 216 14.66 2z0hA 197 14.74 1u1jA 765 14.90 c.1.22.2,c.1.22.2 107590,107591 2phzA 311 15.18 2qm8A 337 15.26 2i5iA 263 15.70 1ltqA 301 16.23 c.108.1.9,c.37.1.1 78208,78209 1znwA 207 19.78 c.37.1.1 125412 1st9A 143 20.02 c.47.1.10 98987 2rebA 352 20.57 c.37.1.11,d.48.1.1 32282,38767 1s4qA 228 21.45 c.37.1.1 98507 1pvdA 537 23.05 c.31.1.3,c.36.1.5,c.36.1.9 31737,31777,31778 2qtcA 886 23.45 2yvtA 260 24.97 1xjcA 169 25.05 c.37.1.10 115387 3b9qA 302 25.10 2g1iA 563 25.79 2af4C 333 27.71 c.77.1.5 126656 1zinA 217 27.89 c.37.1.1,g.41.2.1 31915,45178 1of8A 370 28.39 c.1.10.4 92819 1z45A 699 28.86 b.30.5.4,c.2.1.2 124427,124428 1vbuA 328 28.86 c.1.8.3 119963 1f0kA 364 29.11 c.87.1.2 35465 1riiA 265 30.50 c.60.1.1 111807 1qhfA 240 31.38 c.60.1.1 33960 1phpA 394 31.59 c.86.1.1 35452 2rghA 571 31.81 1ukzA 203 31.98 c.37.1.1 31840 1z8fA 228 32.59 1vplA 256 33.17 c.37.1.12 113966 1ct9A 553 33.59 c.26.2.1,d.153.1.1 31616,41834 1qhxA 178 33.78 c.37.1.3 31936 1tib 269 34.36 1yr2A 741 34.65 2higA 487 34.89 2plrA 213 35.50 1e4yA 214 35.86 c.37.1.1,g.41.2.1 31901,45181 1gqnA 252 35.90 c.1.10.1 90514 2eyuA 261 36.04 1qfeA 252 36.49 c.1.10.1 29167 3b6uA 372 37.32 1bf6A 291 37.60 c.1.9.3 29065 2qw5A 335 38.16 1mwmA 320 39.30 c.55.1.1,c.55.1.1 79580,79581 1g8mA 593 39.71 c.24.1.3,c.97.1.4 60371,60372 2p5tB 253 40.22 1zi8A 236 40.92 2r7aA 256 40.93 1p0kA 349 40.99 c.1.4.1 87648 1ex7A 186 41.79 c.37.1.1 59537 2h0qA 261 42.17 1db3A 372 42.28 c.2.1.2 29813 1oc7A 364 42.57 c.6.1.1 86794 1pcxA 810 42.85 a.71.2.1,b.2.8.1,c.62.1.2,d.109.2.1,g.41.10.1 94497,94498,94499,94500,94501 2z1aA 552 42.91 2ikqA 270 43.20 1kagA 173 43.72 c.37.1.2 72249 2qy9A 309 43.78 1in6A 334 44.07 a.4.5.11,c.37.1.20 62601,62602 1e6cA 173 45.96 c.37.1.2 59296 2q8pA 260 46.37 1gg1A 350 46.64 c.1.10.4 29187 1j8yF 297 48.65 a.24.13.1,c.37.1.10 62747,62748 2j5vA 367 48.82 2r79A 283 49.01 1knqA 175 49.19 c.37.1.17 72786 2r98A 456 49.55 1a0dA 440 50.40 c.1.15.3 29533 1ukz 203 50.60 2gdjA 264 50.93 c.37.1.11 135018 1o7tA 309 51.59 c.94.1.1 86645 1yzyA 413 51.77 c.146.1.1 124292 1kfwA 435 52.90 c.1.8.5,d.26.3.1 77376,77377 2vp4A 230 52.96 2f7tA 227 53.88 2ze7A 253 54.07 2uvfA 608 55.14 1tca 317 56.16 1ayl 541 56.19 3cbwA 353 56.80 2bwjA 199 57.56 1l8aA 886 57.59 c.36.1.10,c.36.1.6,c.48.1.1 73677,73678,73679 2pfkA 320 57.72 c.89.1.1 35577 1r6dA 337 59.05 c.2.1.2 97148 2q62A 247 59.06 2p67A 341 59.77 1n8fA 350 60.04 c.1.10.4 85397 2f1rA 171 60.28 2bvwA 362 60.41 c.6.1.1 30666 1n3bA 216 60.82 c.37.1.1 79959 2o2gA 223 61.29 1rtqA 299 62.09 c.56.5.4 97819 2v40A 459 62.18 1khtA 192 63.39 c.37.1.1 84401 1h1nA 305 63.69 c.1.8.3 70855 1uj2A 252 64.80 c.37.1.6 99452 1jmsA 381 64.93 a.60.6.1,a.60.12.1,d.218.1.2 66889,75862,75863 3bh0A 315 65.34 1g6oA 330 65.72 c.37.1.11 32430 1fj2A 232 67.46 c.69.1.14 34720 1ly1A 181 67.58 c.37.1.1 74334 1nrwA 288 68.78 c.108.1.10 86128 1v7zA 260 69.11 c.125.1.1 100488 1efdN 266 70.55 c.92.2.1 35597 2cvhA 220 70.77 2pt5A 168 70.88 1vmaA 306 71.44 a.24.13.1,c.37.1.10 108887,108888 1zin 217 71.56 1gmlA 178 72.03 c.8.5.2 70273 1w7jA 795 72.20 b.34.3.1,c.37.1.9 120688,120689 1quuA 250 72.92 a.7.1.1,a.7.1.1 16320,16321 2gdnA 267 73.22 2orwA 184 73.60 2og2A 359 73.67 2pcjA 224 75.94 1ivnA 190 76.32 c.23.10.5 83719 2grjA 192 76.93 1c4oA 664 76.94 c.37.1.19,c.37.1.19 32415,32416 2bdtA 189 79.23 c.37.1.25 128344 2fh5B 214 80.06 c.37.1.8 133478 1gvnB 287 80.37 c.37.1.21 76354 1zuhA 168 81.24 2i5gA 325 81.95 2bklA 695 83.74 1tx2A 297 84.65 c.1.21.1 107420 1ry6A 360 85.70 c.37.1.9 98090 1epxA 370 85.72 c.1.10.1 29150 2uuuA 584 86.32 2z4uA 261 88.25 1aj2 282 89.32 2g8lA 299 89.83 e.50.1.1 134775