# List of top-scoring protein chains for t04-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1p5zB 263 0.001166 c.37.1.1 87815 1z6gA 218 0.8306 1ak2A 233 1.546 c.37.1.1,g.41.2.1 31894,45195 2p67A 341 2.169 1n4aA 252 2.720 c.92.2.2 85317 2j41A 207 2.957 2hhjA 267 3.039 c.60.1.1 136497 3be4A 217 3.239 4tmkA 213 3.357 c.37.1.1 31930 1n2zA 245 3.787 c.92.2.2 79865 2ga8A 359 3.795 1gtvA 214 3.920 c.37.1.1 70537 2qt1A 207 4.369 1np6A 174 4.461 c.37.1.10 85954 1akyA 220 5.104 c.37.1.1,g.41.2.1 31896,45197 1nijA 318 6.323 c.37.1.10,d.237.1.1 85741,85742 2qorA 204 6.495 2yvuA 186 6.646 1ki9A 192 6.877 c.37.1.1 84404 1qf9A 194 7.518 c.37.1.1 31848 3c8uA 208 7.668 2pbrA 195 7.880 2gzaA 361 8.882 1xjcA 169 9.191 c.37.1.10 115387 1in4A 334 9.932 a.4.5.11,c.37.1.20 62597,62598 2phzA 311 10.43 2ccjA 205 11.59 1zinA 217 13.83 c.37.1.1,g.41.2.1 31915,45178 1of8A 370 15.38 c.1.10.4 92819 1x6vA 630 15.69 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 2r7aA 256 15.78 2z0hA 197 17.12 1efdN 266 18.12 c.92.2.1 35597 1zpdA 568 18.70 c.31.1.3,c.36.1.5,c.36.1.9 31741,31785,31786 1ukzA 203 18.82 c.37.1.1 31840 1vplA 256 19.18 c.37.1.12 113966 2f1rA 171 19.91 2bwjA 199 20.06 4xis 387 20.69 2axpA 173 21.39 c.37.1.1 127497 1e6cA 173 22.03 c.37.1.2 59296 1gg1A 350 23.43 c.1.10.4 29187 1p6xA 334 23.80 c.37.1.1 94195 1zi8A 236 24.34 2eyuA 261 24.78 1kagA 173 24.91 c.37.1.2 72249 1ozhA 566 25.12 c.31.1.3,c.36.1.5,c.36.1.9 93833,93834,93835 1in6A 334 25.62 a.4.5.11,c.37.1.20 62601,62602 3b9qA 302 25.98 1znwA 207 26.41 c.37.1.1 125412 2pcjA 224 26.59 1ylhA 560 27.48 1e2kA 331 28.00 c.37.1.1 31854 1pvdA 537 28.12 c.31.1.3,c.36.1.5,c.36.1.9 31737,31777,31778 1qqqA 264 28.79 d.117.1.1 40931 1ltqA 301 29.34 c.108.1.9,c.37.1.1 78208,78209 1yr2A 741 29.57 1qfeA 252 30.40 c.1.10.1 29167 2oqyA 391 30.60 1gqnA 252 30.69 c.1.10.1 90514 2cdnA 201 31.20 c.37.1.1 130289 2p5tB 253 31.45 1z8fA 228 31.89 2vp4A 230 34.01 1v7zA 260 34.95 c.125.1.1 100488 1n8fA 350 35.44 c.1.10.4 85397 2q8pA 260 35.52 2qy9A 309 36.05 1knqA 175 36.20 c.37.1.17 72786 1zin 217 36.78 1tq6A 413 37.18 c.37.1.8 107202 3b9pA 297 37.35 2o2gA 223 37.37 2pzeA 229 37.64 1zuhA 168 37.88 2ak3A 226 38.64 c.37.1.1,g.41.2.1 31892,45193 2qm8A 337 39.30 2yvtA 260 39.34 1gmlA 178 39.44 c.8.5.2 70273 1w44A 331 39.93 c.37.1.11 114147 2fh5B 214 40.12 c.37.1.8 133478 1q6zA 528 40.37 c.31.1.3,c.36.1.5,c.36.1.9 111655,111656,111657 2r79A 283 40.59 1khtA 192 40.66 c.37.1.1 84401 1htwA 158 41.31 c.37.1.18 71083 2g1iA 563 43.22 1e4yA 214 43.41 c.37.1.1,g.41.2.1 31901,45181 1hvyA 288 43.98 d.117.1.1 41049 2grjA 192 44.69 1bkpA 278 45.60 d.117.1.1 41029 2k3aA 155 45.90 2oap1 511 48.57 1p3jA 217 49.24 c.37.1.1,g.41.2.1 94022,94023 2vbfA 570 50.09 1uj2A 252 50.89 c.37.1.6 99452 1viaA 175 51.62 c.37.1.2 100754 2bklA 695 52.42 1ukz 203 52.76 1xx6A 191 53.39 c.37.1.24,g.39.1.14 116139,116140 2pt7A 330 55.02 1g6oA 330 55.20 c.37.1.11 32430 1xel 338 55.26 1of1A 376 55.41 c.37.1.1 103924 1yzyA 413 56.35 c.146.1.1 124292 2pfkA 320 56.55 c.89.1.1 35577 2h8lA 252 57.95 2j5vA 367 58.68 1nksA 194 58.77 c.37.1.1 31886 2rgxA 206 60.04 1xtnA 120 60.85 d.189.1.1 116028 1s4qA 228 61.59 c.37.1.1 98507 2q62A 247 62.48 1ypvA 313 64.44 1j8yF 297 65.50 a.24.13.1,c.37.1.10 62747,62748 1e58A 249 65.55 c.60.1.1 59262 1gz0A 253 66.11 c.116.1.1,d.79.3.3 76391,76392 1ls1A 295 66.52 a.24.13.1,c.37.1.10 78170,78171 2plrA 213 66.62 1n3bA 216 66.97 c.37.1.1 79959 2ze7A 253 67.29 1tib 269 67.36 1bf6A 291 67.71 c.1.9.3 29065 1xwiA 322 68.81 1ayl 541 68.90 1zd8A 227 69.00 1ed8A 449 69.13 c.76.1.1 34988 2og2A 359 69.72 1vmaA 306 69.85 a.24.13.1,c.37.1.10 108887,108888 1fj2A 232 70.70 c.69.1.14 34720 2c95A 196 70.84 1f0nA 285 71.46 c.69.1.3 34636 2vc7A 314 71.67 2eu8A 216 72.72 1epxA 370 73.32 c.1.10.1 29150 1riiA 265 75.90 c.60.1.1 111807 2g8mA 264 76.40 1qhxA 178 77.91 c.37.1.3 31936 1hdiA 413 78.13 c.86.1.1 60964 2nwhA 317 79.18 1qhfA 240 79.86 c.60.1.1 33960 1ev5A 264 79.92 d.117.1.1 40935 1din 236 81.06 1bfd 528 81.40 1esmA 316 81.42 c.37.1.6 31953 1gky 187 82.05 1j3bA 529 82.69 c.91.1.1,c.109.1.1 77071,77072 1cp2A 269 82.72 c.37.1.10 32269 1bifA 469 83.86 c.37.1.7,c.60.1.4 31961,34003 2g8oA 264 84.15 d.117.1.1 134779 1evfA 264 84.65 d.117.1.1 40932 1qhiA 366 84.65 c.37.1.1 31860 2b5dX 528 85.45 a.8.3.3,c.6.2.4 127886,127887 1tca 317 86.80 1bf2 750 87.35 2pmkA 243 87.92 2vhjA 331 88.49 1a7j 290 88.59 2npnA 251 88.61