# List of top-scoring protein chains for t04-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1p5zB 263 0.008431 c.37.1.1 87815 2p67A 341 1.445 1ak2A 233 2.171 c.37.1.1,g.41.2.1 31894,45195 1z6gA 218 2.262 2j41A 207 3.509 4tmkA 213 4.191 c.37.1.1 31930 3be4A 217 4.294 1akyA 220 5.053 c.37.1.1,g.41.2.1 31896,45197 1ki9A 192 5.332 c.37.1.1 84404 2ga8A 359 5.611 3c8uA 208 6.817 1np6A 174 9.267 c.37.1.10 85954 2hhjA 267 10.60 c.60.1.1 136497 1gtvA 214 10.67 c.37.1.1 70537 2z0hA 197 11.25 2cdnA 201 11.39 c.37.1.1 130289 2vp4A 230 11.51 2ccjA 205 12.21 2qorA 204 12.61 1efdN 266 13.16 c.92.2.1 35597 1n4aA 252 13.43 c.92.2.2 85317 2yvuA 186 13.43 1zi8A 236 15.45 2pbrA 195 15.72 2oqyA 391 15.78 2f1rA 171 17.11 1kagA 173 17.17 c.37.1.2 72249 1in4A 334 17.26 a.4.5.11,c.37.1.20 62597,62598 2bklA 695 18.56 1qf9A 194 18.95 c.37.1.1 31848 1x6vA 630 18.97 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 1p0kA 349 20.03 c.1.4.1 87648 1sxjE 354 20.61 a.80.1.1,c.37.1.20 106089,106090 2gzaA 361 20.80 1z8fA 228 21.23 1ltqA 301 21.69 c.108.1.9,c.37.1.1 78208,78209 1bf2 750 23.66 2phzA 311 23.83 2pcjA 224 25.14 1yr2A 741 25.28 2eyuA 261 26.10 1n2zA 245 26.49 c.92.2.2 79865 1zinA 217 26.76 c.37.1.1,g.41.2.1 31915,45178 3b9pA 297 27.78 2axpA 173 28.08 c.37.1.1 127497 2orwA 184 28.22 1r9jA 673 28.43 c.36.1.6,c.36.1.10,c.48.1.1 111722,111723,111724 1khtA 192 29.13 c.37.1.1 84401 1ls1A 295 29.96 a.24.13.1,c.37.1.10 78170,78171 2qt1A 207 29.97 1vplA 256 32.55 c.37.1.12 113966 2grjA 192 35.32 1ukzA 203 36.52 c.37.1.1 31840 2o2gA 223 37.10 2plrA 213 37.24 1e4yA 214 38.04 c.37.1.1,g.41.2.1 31901,45181 1tq6A 413 38.40 c.37.1.8 107202 1m1nA 491 40.79 c.92.2.3 78417 1e9rA 437 42.25 c.37.1.11 64827 2o8nA 265 43.41 1ukz 203 44.37 1p9bA 442 44.77 c.37.1.10 94385 1hvyA 288 44.96 d.117.1.1 41049 1in6A 334 45.31 a.4.5.11,c.37.1.20 62601,62602 2pzeA 229 46.86 1qqqA 264 46.94 d.117.1.1 40931 1qh8A 478 47.49 c.92.2.3 35633 1f0nA 285 47.89 c.69.1.3 34636 1qhfA 240 48.59 c.60.1.1 33960 2qy9A 309 48.68 1f6bA 198 49.39 c.37.1.8 64986 1yzyA 413 49.70 c.146.1.1 124292 1zuhA 168 50.79 1znwA 207 50.95 c.37.1.1 125412 2bwjA 199 53.40 2p5tB 253 55.52 1of1A 376 57.50 c.37.1.1 103924 3b9qA 302 58.61 1uj2A 252 59.06 c.37.1.6 99452 1e2kA 331 60.62 c.37.1.1 31854 2q62A 247 61.20 1yeyA 444 61.29 c.1.11.2,d.54.1.1 116664,116665 2yvtA 260 62.38 3c8dA 403 63.96 1v7zA 260 64.67 c.125.1.1 100488 1bkpA 278 66.04 d.117.1.1 41029 1zin 217 66.74 1d2rA 326 67.40 c.26.1.1 31572 1e6cA 173 67.76 c.37.1.2 59296 1qhiA 366 69.03 c.37.1.1 31860 1knqA 175 69.33 c.37.1.17 72786 2iyvA 184 69.44 c.37.1.2 137812 1gg1A 350 71.14 c.1.10.4 29187 1njgA 250 71.94 c.37.1.20 85785 1riiA 265 74.04 c.60.1.1 111807 2rgxA 206 74.28 1s4qA 228 74.67 c.37.1.1 98507 1ypvA 313 75.04 2k3aA 155 76.91 1xjcA 169 77.85 c.37.1.10 115387 1xx6A 191 77.93 c.37.1.24,g.39.1.14 116139,116140 1r0wA 286 78.67 c.37.1.12 96754 2ze7A 253 79.47 2parA 201 79.75 1t3lA 337 80.20 b.34.2.1,c.37.1.1 106358,106359 1viaA 175 80.52 c.37.1.2 100754 1nijA 318 82.30 c.37.1.10,d.237.1.1 85741,85742 2r8bA 251 82.44 1zpdA 568 82.65 c.31.1.3,c.36.1.5,c.36.1.9 31741,31785,31786 1n8fA 350 83.67 c.1.10.4 85397 2ak3A 226 84.41 c.37.1.1,g.41.2.1 31892,45193 2g8oA 264 85.87 d.117.1.1 134779 1qb0A 211 87.96 c.46.1.1 32699 1xel 338 89.84