# List of top-scoring protein chains for t04-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1p5zB 263 0.002529 c.37.1.1 87815 1z6gA 218 1.039 2p67A 341 1.405 4tmkA 213 1.696 c.37.1.1 31930 3be4A 217 2.415 1ak2A 233 2.569 c.37.1.1,g.41.2.1 31894,45195 2hhjA 267 2.618 c.60.1.1 136497 2j41A 207 3.384 1gtvA 214 3.400 c.37.1.1 70537 1np6A 174 4.251 c.37.1.10 85954 1n4aA 252 4.339 c.92.2.2 85317 2yvuA 186 4.473 2orwA 184 4.708 2ga8A 359 5.111 1x6vA 630 5.248 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 2pbrA 195 5.535 1ki9A 192 5.558 c.37.1.1 84404 2ccjA 205 5.605 3c8uA 208 5.971 2f1rA 171 6.006 2z0hA 197 6.130 1xjcA 169 7.597 c.37.1.10 115387 1n2zA 245 7.883 c.92.2.2 79865 2qt1A 207 8.460 2qorA 204 9.154 1qf9A 194 9.207 c.37.1.1 31848 2gzaA 361 9.233 1akyA 220 9.637 c.37.1.1,g.41.2.1 31896,45197 1in4A 334 9.803 a.4.5.11,c.37.1.20 62597,62598 1nijA 318 11.87 c.37.1.10,d.237.1.1 85741,85742 1efdN 266 12.12 c.92.2.1 35597 2grjA 192 12.16 3b9pA 297 15.17 1ukzA 203 15.59 c.37.1.1 31840 1ltqA 301 15.84 c.108.1.9,c.37.1.1 78208,78209 1kagA 173 15.90 c.37.1.2 72249 2phzA 311 15.96 2plrA 213 16.85 1xx6A 191 17.31 c.37.1.24,g.39.1.14 116139,116140 2vp4A 230 17.52 1z8fA 228 17.59 1e4yA 214 17.64 c.37.1.1,g.41.2.1 31901,45181 1tq6A 413 18.38 c.37.1.8 107202 1vplA 256 19.36 c.37.1.12 113966 3b9qA 302 19.65 1knqA 175 22.18 c.37.1.17 72786 2bwjA 199 23.14 1in6A 334 23.37 a.4.5.11,c.37.1.20 62601,62602 1e6cA 173 23.50 c.37.1.2 59296 1of1A 376 23.76 c.37.1.1 103924 1ukz 203 24.77 1znwA 207 25.06 c.37.1.1 125412 1qqqA 264 25.29 d.117.1.1 40931 1e2kA 331 25.33 c.37.1.1 31854 1xel 338 25.86 2eyuA 261 26.21 1qhfA 240 27.21 c.60.1.1 33960 1n3bA 216 27.52 c.37.1.1 79959 2ax4A 198 29.62 2r7aA 256 29.84 2oqyA 391 29.85 1qhiA 366 30.23 c.37.1.1 31860 2p5tB 253 30.23 2axpA 173 30.29 c.37.1.1 127497 2pcjA 224 30.73 2bdtA 189 33.61 c.37.1.25 128344 1zi8A 236 34.56 2qy9A 309 34.82 1f6bA 198 35.25 c.37.1.8 64986 2yvtA 260 35.42 1zuhA 168 36.27 1zinA 217 36.54 c.37.1.1,g.41.2.1 31915,45178 1hvyA 288 36.68 d.117.1.1 41049 2glfA 450 37.78 2ak3A 226 38.31 c.37.1.1,g.41.2.1 31892,45193 1ylhA 560 38.53 1n8fA 350 39.12 c.1.10.4 85397 1p3jA 217 40.68 c.37.1.1,g.41.2.1 94022,94023 1zin 217 41.22 1riiA 265 41.29 c.60.1.1 111807 2pzeA 229 41.46 2cdnA 201 43.19 c.37.1.1 130289 1of8A 370 43.51 c.1.10.4 92819 1e9rA 437 43.63 c.37.1.11 64827 1khtA 192 45.27 c.37.1.1 84401 1bu8A 452 47.63 b.12.1.2,c.69.1.19 23647,34795 2g8oA 264 47.69 d.117.1.1 134779 1gg1A 350 47.91 c.1.10.4 29187 1v7zA 260 48.01 c.125.1.1 100488 1njgA 250 48.64 c.37.1.20 85785 2nwhA 317 51.06 3tmkA 216 51.80 c.37.1.1 31920 1vgwA 231 52.10 c.68.1.13 100612 1yr2A 741 52.57 2g1kA 176 53.16 c.37.1.2 134519 1viaA 175 53.69 c.37.1.2 100754 1bf2 750 55.14 2og2A 359 56.65 1p0kA 349 57.19 c.1.4.1 87648 2ze7A 253 58.68 2k3aA 155 58.81 1yzyA 413 59.18 c.146.1.1 124292 2q8pA 260 60.60 4xis 387 62.24 2g8mA 264 62.55 1a7j 290 62.76 1r0wA 286 63.28 c.37.1.12 96754 2iyvA 184 63.46 c.37.1.2 137812 2bbsA 290 64.47 1ev5A 264 64.64 d.117.1.1 40935 2bklA 695 65.21 1e58A 249 65.50 c.60.1.1 59262 1bif 469 66.95 2parA 201 67.59 1m1nA 491 69.41 c.92.2.3 78417 2qm8A 337 70.81 1w44A 331 71.02 c.37.1.11 114147 2oap1 511 71.05 1f0nA 285 71.22 c.69.1.3 34636 1gz0A 253 71.44 c.116.1.1,d.79.3.3 76391,76392 2rhmA 193 72.49 1bf6A 291 74.76 c.1.9.3 29065 2vc7A 314 77.26 1ls1A 295 79.57 a.24.13.1,c.37.1.10 78170,78171 1j8yF 297 81.46 a.24.13.1,c.37.1.10 62747,62748 1qh8A 478 81.57 c.92.2.3 35633 2q62A 247 82.50 1zpdA 568 83.93 c.31.1.3,c.36.1.5,c.36.1.9 31741,31785,31786 1zd8A 227 84.86 1nksA 194 85.48 c.37.1.1 31886 1sxjE 354 85.54 a.80.1.1,c.37.1.20 106089,106090 2rgxA 206 87.36 1zx1A 231 88.25 c.23.5.3 125760 1bupA 386 88.75 c.55.1.1,c.55.1.1 33377,33378 1uj2A 252 89.60 c.37.1.6 99452