# List of top-scoring protein chains for t04-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1p5zB 263 0.003431 c.37.1.1 87815 1z6gA 218 1.100 2p67A 341 1.169 4tmkA 213 2.082 c.37.1.1 31930 2ga8A 359 3.204 3be4A 217 3.265 1gtvA 214 3.936 c.37.1.1 70537 1x6vA 630 4.135 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 2yvuA 186 4.250 2j41A 207 4.297 1n4aA 252 4.572 c.92.2.2 85317 1ak2A 233 4.681 c.37.1.1,g.41.2.1 31894,45195 2qt1A 207 4.979 2hhjA 267 5.756 c.60.1.1 136497 1np6A 174 5.884 c.37.1.10 85954 2orwA 184 6.344 2gzaA 361 6.394 3c8uA 208 7.066 2f1rA 171 7.202 1ki9A 192 7.209 c.37.1.1 84404 2pbrA 195 7.616 2phzA 311 10.30 1nijA 318 10.84 c.37.1.10,d.237.1.1 85741,85742 1qf9A 194 10.96 c.37.1.1 31848 1n2zA 245 11.05 c.92.2.2 79865 1ukzA 203 11.19 c.37.1.1 31840 1efdN 266 11.38 c.92.2.1 35597 2z0hA 197 11.52 1xjcA 169 12.20 c.37.1.10 115387 1akyA 220 13.30 c.37.1.1,g.41.2.1 31896,45197 2ccjA 205 13.48 2qorA 204 13.73 2ax4A 198 14.38 2cdnA 201 15.95 c.37.1.1 130289 1in4A 334 16.05 a.4.5.11,c.37.1.20 62597,62598 2bdtA 189 18.03 c.37.1.25 128344 1vplA 256 18.12 c.37.1.12 113966 1knqA 175 20.43 c.37.1.17 72786 2grjA 192 20.96 1xx6A 191 21.56 c.37.1.24,g.39.1.14 116139,116140 2r7aA 256 22.80 1zin 217 24.32 1kagA 173 25.13 c.37.1.2 72249 1ukz 203 25.28 2eyuA 261 25.67 1znwA 207 26.08 c.37.1.1 125412 1e4yA 214 27.32 c.37.1.1,g.41.2.1 31901,45181 1of8A 370 27.49 c.1.10.4 92819 2plrA 213 28.25 1of1A 376 29.88 c.37.1.1 103924 1ylhA 560 29.97 1e9rA 437 30.04 c.37.1.11 64827 1n8fA 350 30.47 c.1.10.4 85397 2vp4A 230 30.72 2oqyA 391 31.83 1qhiA 366 32.63 c.37.1.1 31860 1e2kA 331 33.39 c.37.1.1 31854 1zinA 217 33.53 c.37.1.1,g.41.2.1 31915,45178 1tq6A 413 33.96 c.37.1.8 107202 1qqqA 264 34.28 d.117.1.1 40931 3b9pA 297 34.41 2axpA 173 34.65 c.37.1.1 127497 2rhmA 193 35.30 2yvtA 260 35.87 1in6A 334 36.16 a.4.5.11,c.37.1.20 62601,62602 1hvyA 288 36.34 d.117.1.1 41049 2pzeA 229 37.09 1yr2A 741 37.31 1z8fA 228 37.71 1gg1A 350 37.76 c.1.10.4 29187 1ji0A 240 38.33 c.37.1.12 71665 3b9qA 302 39.51 1p6xA 334 40.31 c.37.1.1 94195 2bwjA 199 41.96 2ze7A 253 42.45 1ltqA 301 43.67 c.108.1.9,c.37.1.1 78208,78209 2oap1 511 44.01 1p0kA 349 44.30 c.1.4.1 87648 2nwhA 317 44.50 1a7j 290 45.17 2pcjA 224 45.53 2p5tB 253 46.14 1zi8A 236 46.62 2glfA 450 48.85 1bf6A 291 50.24 c.1.9.3 29065 2qy9A 309 50.49 2k3aA 155 51.08 1htwA 158 51.34 c.37.1.18 71083 1f0nA 285 53.57 c.69.1.3 34636 1r0wA 286 54.21 c.37.1.12 96754 1f6bA 198 56.89 c.37.1.8 64986 2g8oA 264 57.74 d.117.1.1 134779 2q8pA 260 58.64 2qm8A 337 58.71 1gqnA 252 58.77 c.1.10.1 90514 2iyvA 184 59.26 c.37.1.2 137812 1w44A 331 59.78 c.37.1.11 114147 1xel 338 60.19 2g8mA 264 60.94 1g6oA 330 61.08 c.37.1.11 32430 1qfeA 252 61.16 c.1.10.1 29167 2og2A 359 61.36 1s4qA 228 61.46 c.37.1.1 98507 2bbsA 290 65.37 1n3bA 216 65.61 c.37.1.1 79959 1zuhA 168 65.66 1gz0A 253 66.17 c.116.1.1,d.79.3.3 76391,76392 2vc7A 314 66.32 1wz8A 264 66.40 c.14.1.3 121483 1qhfA 240 66.65 c.60.1.1 33960 1zd8A 227 67.36 1bu8A 452 68.34 b.12.1.2,c.69.1.19 23647,34795 1e6cA 173 68.52 c.37.1.2 59296 2hsbA 126 70.52 1njgA 250 75.56 c.37.1.20 85785 2vbfA 570 75.78 1bf2 750 77.05 1ckeA 227 77.56 c.37.1.1 31846 1v7zA 260 77.65 c.125.1.1 100488 2ak3A 226 77.82 c.37.1.1,g.41.2.1 31892,45193 2bklA 695 78.49 2jrnA 163 79.09 1yzyA 413 80.72 c.146.1.1 124292 2o2gA 223 80.77 1bkpA 278 81.28 d.117.1.1 41029 2r79A 283 82.24 1uj2A 252 83.60 c.37.1.6 99452 1ly1A 181 83.76 c.37.1.1 74334 1viaA 175 83.95 c.37.1.2 100754 1gky 187 84.67 1bif 469 84.80 1ozhA 566 85.54 c.31.1.3,c.36.1.5,c.36.1.9 93833,93834,93835 2pmkA 243 86.66 1tib 269 87.13 2osxA 481 87.71 1riiA 265 87.73 c.60.1.1 111807 1qhxA 178 88.39 c.37.1.3 31936 1jjvA 206 89.55 c.37.1.1 71698