# List of top-scoring protein chains for t04-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1p5zB 263 0.000394 c.37.1.1 87815 1n3bA 216 0.1732 c.37.1.1 79959 2ax4A 198 0.1917 2yvuA 186 0.5630 1z6gA 218 0.6125 1ak2A 233 0.8928 c.37.1.1,g.41.2.1 31894,45195 1ukzA 203 1.053 c.37.1.1 31840 3c8uA 208 1.123 1x6vA 630 1.308 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 2j41A 207 1.509 2pbrA 195 2.304 2rhmA 193 2.324 2ccjA 205 2.658 1akyA 220 4.286 c.37.1.1,g.41.2.1 31896,45197 2ga8A 359 4.605 2qorA 204 4.986 2qt1A 207 5.369 1e6cA 173 5.966 c.37.1.2 59296 2bwjA 199 6.255 1t0hB 224 6.469 c.37.1.1 106208 1zi8A 236 6.936 2grjA 192 7.019 1ukz 203 7.240 1ceo 343 9.564 3c2qA 345 10.46 3be4A 217 10.67 1yzyA 413 11.92 c.146.1.1 124292 1p6xA 334 13.76 c.37.1.1 94195 1nijA 318 14.68 c.37.1.10,d.237.1.1 85741,85742 1in6A 334 14.76 a.4.5.11,c.37.1.20 62601,62602 1in4A 334 16.45 a.4.5.11,c.37.1.20 62597,62598 1znwA 207 16.68 c.37.1.1 125412 1kagA 173 17.25 c.37.1.2 72249 1np6A 174 17.39 c.37.1.10 85954 1gtvA 214 18.23 c.37.1.1 70537 1z8fA 228 19.22 2hfkA 319 19.44 2p5tB 253 19.97 1knqA 175 20.15 c.37.1.17 72786 2hhjA 267 20.30 c.60.1.1 136497 1zinA 217 22.30 c.37.1.1,g.41.2.1 31915,45178 2gzaA 361 22.36 2p67A 341 23.93 1rz3A 201 24.44 c.37.1.6 98132 1ceoA 343 24.58 c.1.8.3 28808 2r85A 334 25.43 1s8eA 333 25.93 d.159.1.4 105368 2og2A 359 26.19 1efdN 266 26.45 c.92.2.1 35597 1ki9A 192 27.07 c.37.1.1 84404 2axpA 173 27.24 c.37.1.1 127497 2cdnA 201 28.23 c.37.1.1 130289 3b9qA 302 28.60 1i0lA 221 28.99 c.61.1.1 71096 2bdtA 189 29.16 c.37.1.25 128344 2q8uA 336 29.44 1rkbA 173 31.52 c.37.1.1 111854 1fj2A 232 33.41 c.69.1.14 34720 2hf9A 226 34.55 1viaA 175 35.25 c.37.1.2 100754 1j8yF 297 36.63 a.24.13.1,c.37.1.10 62747,62748 2npnA 251 38.07 1a7j 290 38.40 2qy9A 309 39.17 1cp2A 269 39.29 c.37.1.10 32269 2iyvA 184 40.58 c.37.1.2 137812 1wznA 252 40.60 c.66.1.43 121525 2phzA 311 41.18 1mwmA 320 41.21 c.55.1.1,c.55.1.1 79580,79581 2jgdA 933 41.37 1gky 187 42.10 1uj2A 252 42.70 c.37.1.6 99452 2bdqA 224 43.18 3b9pA 297 44.94 2eyuA 261 45.54 2r7aA 256 49.62 1y63A 184 49.81 c.37.1.1 116494 1htwA 158 51.62 c.37.1.18 71083 1xjcA 169 52.13 c.37.1.10 115387 1vmaA 306 52.28 a.24.13.1,c.37.1.10 108887,108888 1qf9A 194 52.37 c.37.1.1 31848 1ozhA 566 52.80 c.31.1.3,c.36.1.5,c.36.1.9 93833,93834,93835 1zd8A 227 53.49 1kgdA 180 53.79 c.37.1.1 68582 2o2gA 223 54.05 1st9A 143 54.73 c.47.1.10 98987 1tq6A 413 54.75 c.37.1.8 107202 2qm0A 275 54.90 2osxA 481 55.40 1gz0A 253 55.55 c.116.1.1,d.79.3.3 76391,76392 2r79A 283 55.88 1x75A 132 56.37 2bnjA 303 56.98 c.1.8.3 128832 1wuiS 267 57.70 e.19.1.1 121290 1of1A 376 57.80 c.37.1.1 103924 1zin 217 58.15 1n2zA 245 60.26 c.92.2.2 79865 2pt5A 168 60.90 1ex7A 186 60.98 c.37.1.1 59537 1j7jA 178 61.74 c.61.1.1 84131 2eh3A 179 61.98 2uyoA 310 62.86 1vkhA 273 63.36 c.69.1.32 108662 2c95A 196 63.49 1ji0A 240 63.84 c.37.1.12 71665 1n4aA 252 63.87 c.92.2.2 85317 2pezA 179 65.98 1dceA 567 66.21 a.118.6.1,b.7.4.1,c.10.2.2 19191,23218,30867 2orwA 184 67.01 1p3jA 217 67.52 c.37.1.1,g.41.2.1 94022,94023 1pujA 282 68.14 c.37.1.8 88294 2qjwA 176 68.76 2z06A 252 69.08 2nxwA 565 70.43 1jndA 420 71.27 c.1.8.5,d.26.3.1 71757,71758 2g1kA 176 71.39 c.37.1.2 134519 2rgxA 206 71.76 1pvdA 537 71.92 c.31.1.3,c.36.1.5,c.36.1.9 31737,31777,31778 2cdqA 510 73.47 c.73.1.3,d.58.18.10,d.58.18.10 130290,130291,130292 1zuhA 168 74.07 1w77A 228 75.33 c.68.1.13 120679 1m2oA 768 76.81 a.71.2.1,b.2.8.1,c.62.1.2,d.109.2.1,g.41.10.1 78480,78481,78482,78483,78484 2h0qA 261 76.87 3bxpA 277 77.62 2nxfA 322 81.37 1jjvA 206 81.76 c.37.1.1 71698 1eyqA 222 82.38 d.36.1.1 38534 2hxrA 238 83.63 1e4yA 214 84.05 c.37.1.1,g.41.2.1 31901,45181 1ufoA 238 84.35 c.69.1.27 99344 1b0uA 262 85.99 c.37.1.12 32370 1ayl 541 88.23 2ak3A 226 88.58 c.37.1.1,g.41.2.1 31892,45193 1twfB 1224 88.66 e.29.1.1 112726 2ywdA 191 89.92