# List of top-scoring protein chains for t04-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1p5zB 263 0.008671 c.37.1.1 87815 2ccjA 205 1.163 1ak2A 233 1.326 c.37.1.1,g.41.2.1 31894,45195 3c8uA 208 1.948 2pbrA 195 2.201 2yvuA 186 2.281 2qt1A 207 2.302 1akyA 220 2.434 c.37.1.1,g.41.2.1 31896,45197 1z6gA 218 2.805 1in6A 334 3.361 a.4.5.11,c.37.1.20 62601,62602 1in4A 334 4.527 a.4.5.11,c.37.1.20 62597,62598 1ukz 203 5.367 1ukzA 203 5.921 c.37.1.1 31840 2grjA 192 6.198 2ax4A 198 6.872 2j41A 207 7.782 1n3bA 216 7.833 c.37.1.1 79959 3be4A 217 7.998 3b9pA 297 9.368 2iyvA 184 9.788 c.37.1.2 137812 1kagA 173 9.910 c.37.1.2 72249 2ga8A 359 10.07 1p6xA 334 10.41 c.37.1.1 94195 1viaA 175 10.78 c.37.1.2 100754 1np6A 174 12.44 c.37.1.10 85954 1qf9A 194 13.11 c.37.1.1 31848 1of1A 376 13.19 c.37.1.1 103924 2rgxA 206 15.10 2r7aA 256 15.64 2cdnA 201 15.93 c.37.1.1 130289 1m1nA 491 17.49 c.92.2.3 78417 1e6cA 173 17.80 c.37.1.2 59296 2g1kA 176 21.81 c.37.1.2 134519 1x6vA 630 23.57 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 1gtvA 214 23.82 c.37.1.1 70537 2qorA 204 25.04 1efdN 266 26.55 c.92.2.1 35597 1uj2A 252 26.85 c.37.1.6 99452 1qh8A 478 27.49 c.92.2.3 35633 1n4aA 252 28.29 c.92.2.2 85317 1yzyA 413 28.30 c.146.1.1 124292 2f1rA 171 29.68 1zuhA 168 30.08 3b9qA 302 31.05 2v40A 459 31.26 1zinA 217 31.59 c.37.1.1,g.41.2.1 31915,45178 1cp2A 269 32.73 c.37.1.10 32269 1rkbA 173 33.34 c.37.1.1 111854 1zi8A 236 33.47 1knqA 175 33.73 c.37.1.17 72786 2q8uA 336 35.53 1ji0A 240 36.32 c.37.1.12 71665 1nijA 318 37.13 c.37.1.10,d.237.1.1 85741,85742 2hhjA 267 37.24 c.60.1.1 136497 2r79A 283 37.68 2qjwA 176 38.53 1qf5A 431 38.60 c.37.1.10 32212 2osxA 481 38.70 2orwA 184 38.80 2p5tB 253 38.95 1a7j 290 40.36 2ak3A 226 42.67 c.37.1.1,g.41.2.1 31892,45193 1w44A 331 43.32 c.37.1.11 114147 2eyuA 261 43.49 1gz0A 253 44.54 c.116.1.1,d.79.3.3 76391,76392 2axpA 173 44.74 c.37.1.1 127497 1i0lA 221 45.06 c.61.1.1 71096 1tq6A 413 47.30 c.37.1.8 107202 1znwA 207 47.75 c.37.1.1 125412 2is6A 680 47.96 2nxwA 565 49.22 2pt5A 168 51.00 1ceo 343 51.15 1n2zA 245 51.66 c.92.2.2 79865 3b6uA 372 52.26 1qhiA 366 54.88 c.37.1.1 31860 2bwjA 199 55.36 2vbfA 570 55.51 1xrjA 261 55.96 c.37.1.6 122256 4tmkA 213 56.57 c.37.1.1 31930 1ogiA 303 57.58 b.43.4.2,c.25.1.1 92914,92915 1st9A 143 58.45 c.47.1.10 98987 1ylhA 560 60.57 1xjcA 169 61.85 c.37.1.10 115387 1jndA 420 62.76 c.1.8.5,d.26.3.1 71757,71758 2o8nA 265 63.08 1ki9A 192 63.46 c.37.1.1 84404 1fj2A 232 67.68 c.69.1.14 34720 1pujA 282 68.66 c.37.1.8 88294 1jjvA 206 69.39 c.37.1.1 71698 16pk 415 69.60 1ltqA 301 69.62 c.108.1.9,c.37.1.1 78208,78209 2c95A 196 71.12 2ax3A 502 71.43 c.72.1.4,c.104.1.1 127477,127478 2q8pA 260 72.13 2bdqA 224 72.60 1ayl 541 73.40 2phzA 311 73.74 2gzaA 361 74.47 2z0hA 197 74.58 2vp4A 230 75.29 1xx6A 191 75.54 c.37.1.24,g.39.1.14 116139,116140 1mwmA 320 79.33 c.55.1.1,c.55.1.1 79580,79581 2bsaA 303 85.50 b.43.4.2,c.25.1.1 129078,129079 1p9bA 442 85.77 c.37.1.10 94385 1nni1 174 85.85 1r88A 280 85.86 c.69.1.3 97219 1w2xA 758 85.87 c.14.1.4,c.14.1.4 109134,109135 2qy9A 309 86.05 1vplA 256 86.59 c.37.1.12 113966 2j27A 250 87.10 1vhtA 218 88.48 c.37.1.1 100700 1zd8A 227 89.30