# List of top-scoring protein chains for t04-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1tuoA 464 6.178 1m32A 366 6.360 c.67.1.3 78508 1nal1 297 6.392 2ccjA 205 6.833 1ceoA 343 7.635 c.1.8.3 28808 1p5zB 263 8.000 c.37.1.1 87815 1zowA 313 8.008 1z7aA 308 8.177 c.6.2.6 124591 2bmaA 470 8.322 1f0kA 364 9.005 c.87.1.2 35465 1hv9A 456 9.179 b.81.1.4,c.68.1.5 28060,34518 1o4sA 389 11.10 c.67.1.1 86620 1e58A 249 12.13 c.60.1.1 59262 2iv2X 715 12.48 b.52.2.2,c.81.1.1 137714,137715 2exrA 524 13.33 2i5gA 325 13.43 1gtmA 419 13.86 c.2.1.7,c.58.1.1 30223,33871 1ceo 343 14.08 1gnxA 479 14.09 c.1.8.4 76241 1x19A 359 14.44 2dbqA 334 14.96 2ip2A 334 15.25 1hl2A 297 15.67 c.1.10.1 83581 1yzyA 413 16.37 c.146.1.1 124292 1gsoA 431 16.98 b.84.2.1,c.30.1.1,d.142.1.2 28240,31647,41492 1j5sA 463 18.31 c.1.9.8 71580 1zuwA 272 18.43 1dv1A 449 18.62 b.84.2.1,c.30.1.1,d.142.1.2 28234,31641,41486 2qpxA 376 20.21 2bbsA 290 21.21 2p6pA 384 22.14 2hhjA 267 22.49 c.60.1.1 136497 1ydnA 295 24.31 3c4vA 426 24.49 2gzmA 267 24.99 3bosA 242 26.49 1ujqA 305 26.50 c.1.12.7 99463 3bjdA 332 27.65 1hnjA 317 27.70 c.95.1.2,c.95.1.2 35969,35970 1vpqA 273 28.21 c.1.32.1 113974 1wm1A 317 28.96 c.69.1.7 109405 2a6pA 208 29.42 1b26A 416 29.46 c.2.1.7,c.58.1.1 30232,33880 1kjqA 391 31.22 b.84.2.1,c.30.1.1,d.142.1.2 72616,72617,72618 1gdhA 320 31.93 c.2.1.4,c.23.12.1 30095,31355 1qhfA 240 32.31 c.60.1.1 33960 1r0wA 286 33.67 c.37.1.12 96754 2aq4A 434 34.80 1yt8A 539 35.03 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 1b0aA 288 35.15 c.2.1.7,c.58.1.2 30286,33934 1rhs 296 35.15 1xrjA 261 35.81 c.37.1.6 122256 2nuwA 288 36.47 2ragA 417 36.83 2o1eA 312 39.04 1mxsA 225 39.81 c.1.10.1 91494 1ryiA 382 40.21 c.3.1.2,d.16.1.3 118813,118814 2qe6A 274 41.69 3c2qA 345 42.61 2a6nA 292 42.92 c.1.10.1 126289 1akoA 268 43.05 d.151.1.1 41779 1eyzA 392 43.23 b.84.2.1,c.30.1.1,d.142.1.2 28246,31653,41498 1xkyA 301 43.39 c.1.10.1 122094 1t6cA 315 43.46 c.55.1.8,c.55.1.8 106558,106559 2zgyA 320 44.09 2nx9A 464 44.56 1mj3A 260 45.12 c.14.1.3 79183 1zjaA 557 45.65 1w1oA 534 46.42 d.58.32.4,d.145.1.1 109071,109072 1gzgA 337 47.86 c.1.10.3 70805 1xv5A 401 48.54 1yslA 402 48.69 2epgA 487 49.11 1rec 201 50.12 1eu8A 409 50.86 c.94.1.1 59502 1afwA 393 50.88 c.95.1.1,c.95.1.1 35900,35901 1kpgA 287 51.96 c.66.1.18 68735 2iyaA 424 53.29 1ako 268 53.76 1wqaA 455 54.99 2hgsA 474 55.85 c.30.1.4,d.142.1.6 31722,75997 2a6lA 292 55.87 c.1.10.1 126285 1b6rA 355 56.30 b.84.2.1,c.30.1.1,d.142.1.2 28241,31648,41493 1cl1A 395 56.68 c.67.1.3 34395 1u6eA 335 56.83 c.95.1.2,c.95.1.2 119568,119569 1pjqA 457 56.86 c.2.1.11,c.90.1.1,e.37.1.1 94766,94767,94768 1b4kA 337 57.01 c.1.10.3 29184 1hzpA 335 57.16 c.95.1.2,c.95.1.2 61455,61456 2o57A 297 57.60 1yovA 537 57.85 c.111.1.2 123785 1hrdA 449 58.25 c.2.1.7,c.58.1.1 30219,33867 2oblA 347 58.31 2iyfA 430 58.70 2dp3A 257 59.45 2e7jA 371 59.71 1m6jA 261 59.96 c.1.1.1 78693 2dr1A 386 60.31 1dhpA 292 60.65 c.1.10.1 29097 2atsA 292 61.40 c.1.10.1 127306 2pq6A 482 61.40 1rqjA 299 62.07 a.128.1.1 97744 1b5pA 385 62.56 c.67.1.1 90403 1q3qA 548 64.50 a.129.1.2,c.8.5.2,d.56.1.2 95704,95705,95706 1anf 370 64.92 2qb7A 397 65.15 2f2sA 406 65.34 1b3bA 415 66.13 c.2.1.7,c.58.1.1 30244,33892 2hmcA 344 66.59 1a4iA 301 66.96 c.2.1.7,c.58.1.2 30278,33926 1qtrA 317 67.75 c.69.1.7 34660 1ra0A 430 67.81 b.92.1.2,c.1.9.5 111756,111757 2j0wA 449 67.89 c.73.1.3,d.58.18.10,d.58.18.10 137923,137924,137925 2j5bA 348 67.95 1d0vA 356 68.40 c.39.1.1 32476 1m15A 357 69.06 a.83.1.1,d.128.1.2 78368,78369 1w3iA 293 70.28 c.1.10.1 109152 1wwkA 307 70.58 1rh9A 373 73.07 c.1.8.3 118773 1xl7A 612 73.45 c.43.1.3,c.43.1.3 115438,115439 2q4wA 524 73.92 1oycA 400 74.26 c.1.4.1 28603 1eokA 290 74.46 c.1.8.5 28991 2i62A 265 74.56 1anfA 370 74.85 c.94.1.1 35776 2f7lA 455 75.55 1omrA 201 75.96 a.39.1.5 93349 3ciwA 348 78.43 2dplA 308 78.95 2ej5A 257 79.52 3c3yA 237 80.68 1b74A 254 81.29 c.78.2.1,c.78.2.1 35264,35265 1mzjA 339 81.89 c.95.1.2,c.95.1.2 79700,79701 1mumA 295 83.07 c.1.12.7 85108 1gvnB 287 84.16 c.37.1.21 76354 1w5qA 337 84.21 2owlA 303 84.26 1fmjA 351 84.38 c.37.1.5 59879 1yhtA 367 84.74 c.1.8.6 123213 3cerA 343 85.73 1dv2A 452 86.13 b.84.2.1,c.30.1.1,d.142.1.2 28238,31645,41490 1vjoA 393 88.23 c.67.1.3 100827 3bk2A 562 88.35 2d3yA 219 88.84 1qv9A 283 88.92 c.127.1.1 96356