# List of top-scoring protein chains for t2k-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1oe0A 230 0.02199 c.37.1.1 92788 2p67A 341 0.05355 2vp4A 230 0.3275 2qm8A 337 0.3562 2p5tB 253 0.5986 2z0hA 197 0.7228 1rz3A 201 0.7244 c.37.1.6 98132 2gzaA 361 1.234 1p9rA 418 1.402 c.37.1.11 94399 2ax4A 198 1.407 1np6A 174 1.466 c.37.1.10 85954 2pbrA 195 1.547 2pezA 179 2.308 2an9A 207 2.677 c.37.1.1 127037 1zm7A 230 2.718 2oap1 511 2.957 2q8pA 260 3.037 1gtvA 214 3.096 c.37.1.1 70537 1z8fA 228 3.187 5tmpA 213 3.371 c.37.1.1 31931 1n2zA 245 3.509 c.92.2.2 79865 2j41A 207 3.870 1njgA 250 4.287 c.37.1.20 85785 1tq6A 413 4.365 c.37.1.8 107202 1s4qA 228 4.482 c.37.1.1 98507 1esmA 316 4.749 c.37.1.6 31953 1in4A 334 5.064 a.4.5.11,c.37.1.20 62597,62598 1s96A 219 5.080 c.37.1.1 98740 1htwA 158 5.164 c.37.1.18 71083 2qy9A 309 5.387 1znwA 207 5.735 c.37.1.1 125412 1h65A 270 5.740 c.37.1.8 65640 2f1rA 171 5.755 1qf9A 194 5.874 c.37.1.1 31848 1ex7A 186 6.091 c.37.1.1 59537 2axpA 173 6.155 c.37.1.1 127497 1gky 187 6.251 1n4aA 252 6.416 c.92.2.2 85317 3b9qA 302 7.648 1ukz 203 7.745 1nn5A 215 7.993 c.37.1.1 85892 2og2A 359 8.529 2pt7A 330 8.549 1sq5A 308 8.582 c.37.1.6 105882 2b8wA 328 9.095 1p5zB 263 9.724 c.37.1.1 87815 1vmaA 306 10.11 a.24.13.1,c.37.1.10 108887,108888 1qhxA 178 10.67 c.37.1.3 31936 2ccjA 205 10.68 3c8uA 208 10.69 2px0A 296 11.52 2qt1A 207 11.72 2bdtA 189 13.06 c.37.1.25 128344 2yvuA 186 13.12 2qorA 204 13.79 1kagA 173 14.32 c.37.1.2 72249 2cbzA 237 15.51 1xjcA 169 15.62 c.37.1.10 115387 1bif 469 16.28 2q3fA 181 16.40 2bwjA 199 16.57 1fl9A 161 17.16 c.37.1.18 70137 1e9eA 215 17.64 c.37.1.1 64810 1qhsA 178 18.15 c.37.1.3 31938 1kdoA 227 18.91 c.37.1.1 68478 1kngA 156 19.74 c.47.1.10 72777 1xp3A 307 20.48 c.1.15.1 122210 2ga8A 359 21.89 2ff7A 247 21.94 c.37.1.12 133377 3bifA 468 25.24 c.37.1.7,c.60.1.4 31962,34008 1t71A 281 25.28 d.159.1.9 112283 1fj2A 232 26.50 c.69.1.14 34720 2ixeA 271 26.82 4tmkA 213 27.16 c.37.1.1 31930 1in6A 334 27.40 a.4.5.11,c.37.1.20 62601,62602 1jr3A 373 27.70 a.80.1.1,c.37.1.20 63245,63246 1e1dA 553 28.90 e.26.1.1 43363 2v26A 784 29.47 2pmkA 243 29.61 1gz0A 253 29.68 c.116.1.1,d.79.3.3 76391,76392 1zu4A 320 29.93 3b9pA 297 31.05 1g6oA 330 33.54 c.37.1.11 32430 1nksA 194 34.99 c.37.1.1 31886 1ukzA 203 37.58 c.37.1.1 31840 1kgdA 180 38.62 c.37.1.1 68582 2c95A 196 39.58 1uj2A 252 40.37 c.37.1.6 99452 1w9iA 770 40.60 1gntA 553 41.36 e.26.1.1 70290 1h1nA 305 41.94 c.1.8.3 70855 3tmkA 216 42.16 c.37.1.1 31920 1svsA 353 42.73 c.37.1.8 106051 2c9oA 456 42.75 2qgnA 322 43.32 1d6jA 211 43.52 c.37.1.4 31940 1nsf 273 43.85 2bkhA 814 44.74 1odfA 290 45.32 c.37.1.6 92782 1x6vA 630 45.36 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 1br2A 791 45.61 b.34.3.1,c.37.1.9 24558,32155 1yuwA 554 46.70 b.130.1.1,c.55.1.1,c.55.1.1 124070,124071,124072 2nutA 769 47.51 2g09A 297 48.91 1kezA 300 49.88 c.69.1.22 68546 3cnyA 301 53.11 2akaA 776 54.07 1a5tA 334 54.55 a.80.1.1,c.37.1.20 18450,32423 1z6gA 218 54.69 1s8eA 333 55.07 d.159.1.4 105368 1pcxA 810 57.03 a.71.2.1,b.2.8.1,c.62.1.2,d.109.2.1,g.41.10.1 94497,94498,94499,94500,94501 1lkxA 697 57.04 c.37.1.9 73981 2fp8A 322 57.04 1yrbA 262 57.47 c.37.1.10 123915 2eyuA 261 58.23 2rhmA 193 58.59 1phpA 394 58.79 c.86.1.1 35452 1m7gA 211 60.14 c.37.1.4 78724 2jrnA 163 61.59 1dciA 275 62.07 c.14.1.3 30918 2ookA 127 63.35 1e4yA 214 66.29 c.37.1.1,g.41.2.1 31901,45181 1mvwA 840 67.81 i.15.1.1 79523 1p3jA 217 68.01 c.37.1.1,g.41.2.1 94022,94023 2k3aA 155 69.35 1d0yA 761 70.26 b.34.3.1,c.37.1.9 24581,32178 1viaA 175 70.28 c.37.1.2 100754 2qxlA 658 70.64 1lvk 762 70.76 1xwiA 322 70.80 1d2nA 272 72.49 c.37.1.20 32428 16pkA 415 72.56 c.86.1.1 35454 1zin 217 72.77 1pbuA 162 76.64 d.58.46.1 88030 1vqoV 71 76.75 a.2.2.1 120383 1gnlA 544 76.80 e.26.1.1 70287 16pk 415 77.19 1pujA 282 77.33 c.37.1.8 88294 2vqeI 128 77.81 1j8mF 297 77.95 a.24.13.1,c.37.1.10 62742,62743 1azsC 388 79.72 a.66.1.1,c.37.1.8 18203,32086 1hqcA 324 80.61 a.4.5.11,c.37.1.20 16127,32424 1bouA 139 81.37 a.88.1.1 18521 2h8lA 252 83.54 1lv7A 257 83.60 c.37.1.20 78232 1w7jA 795 83.97 b.34.3.1,c.37.1.9 120688,120689 2olrA 540 86.63 c.91.1.1,c.109.1.1 139140,139141 1ye8A 178 88.86 c.37.1.11 123010 1m2oA 768 89.10 a.71.2.1,b.2.8.1,c.62.1.2,d.109.2.1,g.41.10.1 78480,78481,78482,78483,78484 2hf9A 226 89.66 1hdiA 413 89.98 c.86.1.1 60964