# List of top-scoring protein chains for t2k-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2p67A 341 0.03833 1oe0A 230 0.05356 c.37.1.1 92788 2qm8A 337 0.2630 2vp4A 230 0.3507 2z0hA 197 0.5944 2ax4A 198 0.9202 2p5tB 253 0.9704 2q8pA 260 0.9838 1gtvA 214 1.077 c.37.1.1 70537 2pbrA 195 1.122 1ukz 203 1.292 1n2zA 245 1.297 c.92.2.2 79865 1z8fA 228 1.365 1rz3A 201 1.433 c.37.1.6 98132 2pezA 179 1.509 1p9rA 418 1.645 c.37.1.11 94399 1zm7A 230 1.821 2gzaA 361 2.004 1s4qA 228 2.087 c.37.1.1 98507 2an9A 207 2.213 c.37.1.1 127037 1s96A 219 2.274 c.37.1.1 98740 5tmpA 213 2.445 c.37.1.1 31931 2ccjA 205 2.509 1np6A 174 2.851 c.37.1.10 85954 1n4aA 252 3.395 c.92.2.2 85317 1htwA 158 3.741 c.37.1.18 71083 2j41A 207 3.759 2qy9A 309 3.890 1in4A 334 3.897 a.4.5.11,c.37.1.20 62597,62598 1ukzA 203 4.216 c.37.1.1 31840 1vmaA 306 4.678 a.24.13.1,c.37.1.10 108887,108888 2axpA 173 4.799 c.37.1.1 127497 1tq6A 413 5.418 c.37.1.8 107202 1znwA 207 5.532 c.37.1.1 125412 2f1rA 171 5.593 2oap1 511 5.626 1ex7A 186 6.635 c.37.1.1 59537 2yvuA 186 6.735 3c8uA 208 6.761 1njgA 250 6.770 c.37.1.20 85785 1gky 187 6.786 2bwjA 199 7.113 1esmA 316 7.674 c.37.1.6 31953 1qf9A 194 7.750 c.37.1.1 31848 2qorA 204 8.077 1p5zB 263 8.152 c.37.1.1 87815 1nn5A 215 8.854 c.37.1.1 85892 1zin 217 9.098 2pt7A 330 11.48 1fl9A 161 11.59 c.37.1.18 70137 1sq5A 308 11.73 c.37.1.6 105882 1akyA 220 12.03 c.37.1.1,g.41.2.1 31896,45197 2px0A 296 12.05 2ga8A 359 12.28 1h65A 270 14.22 c.37.1.8 65640 1kagA 173 14.59 c.37.1.2 72249 2ff7A 247 14.99 c.37.1.12 133377 1qhxA 178 15.52 c.37.1.3 31936 2bdtA 189 15.59 c.37.1.25 128344 1bif 469 16.18 4tmkA 213 17.52 c.37.1.1 31930 1fj2A 232 17.65 c.69.1.14 34720 3b9qA 302 18.07 2qt1A 207 18.29 1kngA 156 18.83 c.47.1.10 72777 1x6vA 630 19.64 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 2og2A 359 19.73 2q3fA 181 19.97 1qhsA 178 21.14 c.37.1.3 31938 1zu4A 320 22.10 1e9eA 215 22.53 c.37.1.1 64810 2cbzA 237 22.65 2pmkA 243 23.85 2ixeA 271 24.51 3bifA 468 24.56 c.37.1.7,c.60.1.4 31962,34008 1kgdA 180 25.62 c.37.1.1 68582 2c95A 196 26.87 3tmkA 216 27.80 c.37.1.1 31920 1nksA 194 28.91 c.37.1.1 31886 1bouA 139 29.80 a.88.1.1 18521 1kdoA 227 30.19 c.37.1.1 68478 1t71A 281 31.33 d.159.1.9 112283 1xjcA 169 31.39 c.37.1.10 115387 2g09A 297 31.46 2b8wA 328 32.85 3be4A 217 32.99 1gz0A 253 33.04 c.116.1.1,d.79.3.3 76391,76392 1in6A 334 34.11 a.4.5.11,c.37.1.20 62601,62602 3b9pA 297 34.16 1h1nA 305 36.12 c.1.8.3 70855 1jr3A 373 36.37 a.80.1.1,c.37.1.20 63245,63246 1yuwA 554 36.90 b.130.1.1,c.55.1.1,c.55.1.1 124070,124071,124072 2h8lA 252 37.31 1nsf 273 37.45 2v26A 784 38.96 1s8eA 333 39.23 d.159.1.4 105368 2o8nA 265 40.57 2nutA 769 41.05 1j8yF 297 43.07 a.24.13.1,c.37.1.10 62747,62748 1e4yA 214 43.25 c.37.1.1,g.41.2.1 31901,45181 1z6gA 218 43.43 2d9iA 96 43.48 2bkhA 814 45.66 2etvA 346 46.29 c.92.2.4 132372 1d6jA 211 47.11 c.37.1.4 31940 1kezA 300 47.29 c.69.1.22 68546 1e1dA 553 47.70 e.26.1.1 43363 1ee2A 373 49.80 b.35.1.2,c.2.1.1 24663,29679 1pcxA 810 49.93 a.71.2.1,b.2.8.1,c.62.1.2,d.109.2.1,g.41.10.1 94497,94498,94499,94500,94501 1bhgA 613 50.70 b.1.4.1,b.18.1.5,c.1.8.3 22161,23766,28889 1n8kA 374 50.93 b.35.1.2,c.2.1.1 80298,80299 1uj2A 252 53.51 c.37.1.6 99452 1yrbA 262 53.75 c.37.1.10 123915 1gntA 553 53.78 e.26.1.1 70290 2qgnA 322 54.65 1axgA 374 55.05 b.35.1.2,c.2.1.1 24691,29707 2rhmA 193 55.38 2ak3A 226 55.69 c.37.1.1,g.41.2.1 31892,45193 1d2nA 272 55.99 c.37.1.20 32428 2cdnA 201 59.09 c.37.1.1 130289 1hqcA 324 59.90 a.4.5.11,c.37.1.20 16127,32424 1j8mF 297 60.43 a.24.13.1,c.37.1.10 62742,62743 1efdN 266 61.78 c.92.2.1 35597 1m2oA 768 62.14 a.71.2.1,b.2.8.1,c.62.1.2,d.109.2.1,g.41.10.1 78480,78481,78482,78483,78484 1p3jA 217 64.86 c.37.1.1,g.41.2.1 94022,94023 2eyuA 261 69.64 2dk7A 73 70.01 1odfA 290 71.07 c.37.1.6 92782 1w9iA 770 72.09 1xp3A 307 72.68 c.1.15.1 122210 2za4B 90 73.17 2vqeI 128 73.77 1bifA 469 74.11 c.37.1.7,c.60.1.4 31961,34003 2bjkA 516 74.11 1f2tA 149 74.13 c.37.1.12 32373 1azsC 388 74.20 a.66.1.1,c.37.1.8 18203,32086 1yzyA 413 74.23 c.146.1.1 124292 1zinA 217 75.63 c.37.1.1,g.41.2.1 31915,45178 1axeA 374 76.19 b.35.1.2,c.2.1.1 24681,29697 2feaA 236 79.71 c.108.1.20 133327 1wx1A 335 80.54 1sgwA 214 81.30 c.37.1.12 105541 1vqoV 71 81.51 a.2.2.1 120383 2c9oA 456 85.19 1e9rA 437 87.52 c.37.1.11 64827 2bifA 469 87.75 c.37.1.7,c.60.1.4 31963,34009