# List of top-scoring protein chains for t2k-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1oe0A 230 0.05192 c.37.1.1 92788 2p67A 341 0.07167 2z0hA 197 0.1822 2qm8A 337 0.5071 2vp4A 230 0.5517 2pbrA 195 0.5735 1gtvA 214 0.5795 c.37.1.1 70537 2p5tB 253 0.7116 1rz3A 201 0.8529 c.37.1.6 98132 2ax4A 198 0.9762 2pezA 179 1.106 1s4qA 228 1.201 c.37.1.1 98507 1p9rA 418 1.251 c.37.1.11 94399 2gzaA 361 1.349 1np6A 174 1.375 c.37.1.10 85954 5tmpA 213 1.601 c.37.1.1 31931 1s96A 219 1.836 c.37.1.1 98740 1znwA 207 1.888 c.37.1.1 125412 1nn5A 215 1.891 c.37.1.1 85892 1z8fA 228 1.972 2an9A 207 2.177 c.37.1.1 127037 4tmkA 213 2.215 c.37.1.1 31930 1n2zA 245 2.345 c.92.2.2 79865 2j41A 207 2.783 1in4A 334 3.177 a.4.5.11,c.37.1.20 62597,62598 1tq6A 413 3.251 c.37.1.8 107202 2oap1 511 3.475 1ukz 203 3.609 2ccjA 205 3.652 1zm7A 230 3.849 1gky 187 3.930 2q8pA 260 4.000 2bwjA 199 4.575 1ex7A 186 4.673 c.37.1.1 59537 2qy9A 309 4.999 1h65A 270 5.101 c.37.1.8 65640 2axpA 173 5.437 c.37.1.1 127497 1p5zB 263 5.548 c.37.1.1 87815 1n4aA 252 5.568 c.92.2.2 85317 2ga8A 359 7.125 1vmaA 306 7.520 a.24.13.1,c.37.1.10 108887,108888 2f1rA 171 7.638 3tmkA 216 8.016 c.37.1.1 31920 2ff7A 247 8.281 c.37.1.12 133377 2qorA 204 8.640 1kagA 173 8.907 c.37.1.2 72249 1esmA 316 9.044 c.37.1.6 31953 1e9eA 215 9.583 c.37.1.1 64810 2cbzA 237 9.607 1sq5A 308 9.795 c.37.1.6 105882 1kdoA 227 9.805 c.37.1.1 68478 1njgA 250 9.852 c.37.1.20 85785 1kngA 156 10.98 c.47.1.10 72777 3b9qA 302 11.12 1qhxA 178 11.58 c.37.1.3 31936 1htwA 158 11.60 c.37.1.18 71083 1akyA 220 11.81 c.37.1.1,g.41.2.1 31896,45197 1z6gA 218 11.82 2pmkA 243 12.28 2q3fA 181 14.41 2og2A 359 14.80 2bdtA 189 14.82 c.37.1.25 128344 1qf9A 194 15.79 c.37.1.1 31848 2ixeA 271 16.28 2b8wA 328 16.29 1in6A 334 16.68 a.4.5.11,c.37.1.20 62601,62602 1g6oA 330 17.32 c.37.1.11 32430 3c8uA 208 17.68 1xp3A 307 18.35 c.1.15.1 122210 1d6jA 211 18.83 c.37.1.4 31940 2c95A 196 19.47 1zin 217 20.60 2pt7A 330 21.17 1qhsA 178 21.26 c.37.1.3 31938 2px0A 296 21.89 1e4yA 214 22.01 c.37.1.1,g.41.2.1 31901,45181 1bif 469 22.24 1kgdA 180 22.92 c.37.1.1 68582 1xjcA 169 25.96 c.37.1.10 115387 2qt1A 207 26.78 1sgwA 214 28.09 c.37.1.12 105541 1gz0A 253 28.33 c.116.1.1,d.79.3.3 76391,76392 1t71A 281 30.27 d.159.1.9 112283 1m7gA 211 31.74 c.37.1.4 78724 2g09A 297 32.03 3bifA 468 32.12 c.37.1.7,c.60.1.4 31962,34008 1fj2A 232 32.61 c.69.1.14 34720 1d2nA 272 34.95 c.37.1.20 32428 1ukzA 203 37.08 c.37.1.1 31840 1nsf 273 37.31 2pzeA 229 38.36 1fl9A 161 39.13 c.37.1.18 70137 2c9oA 456 39.43 3be4A 217 39.58 2rhmA 193 41.33 2vqeI 128 41.86 2eyuA 261 43.07 2j00I 128 43.47 d.14.1.1 137847 1bhgA 613 43.47 b.1.4.1,b.18.1.5,c.1.8.3 22161,23766,28889 2plrA 213 43.73 1jr3A 373 43.97 a.80.1.1,c.37.1.20 63245,63246 1ee2A 373 45.38 b.35.1.2,c.2.1.1 24663,29679 2nq2C 253 45.61 2yvuA 186 45.80 2v26A 784 46.53 1h1nA 305 46.66 c.1.8.3 70855 1e69B 322 47.14 c.37.1.12 32377 2qgnA 322 47.65 2bkhA 814 48.25 1j8yF 297 50.04 a.24.13.1,c.37.1.10 62747,62748 1j8mF 297 50.16 a.24.13.1,c.37.1.10 62742,62743 1e1dA 553 52.38 e.26.1.1 43363 2d9iA 96 54.61 1rkbA 173 56.30 c.37.1.1 111854 1ckeA 227 56.48 c.37.1.1 31846 1axgA 374 56.53 b.35.1.2,c.2.1.1 24691,29707 1ji0A 240 56.96 c.37.1.12 71665 1axeA 374 57.63 b.35.1.2,c.2.1.1 24681,29697 1svsA 353 58.25 c.37.1.8 106051 1n8kA 374 58.81 b.35.1.2,c.2.1.1 80298,80299 1kezA 300 61.00 c.69.1.22 68546 1zu4A 320 62.15 2h8lA 252 62.83 3cnyA 301 62.97 1p3jA 217 63.16 c.37.1.1,g.41.2.1 94022,94023 1uj2A 252 64.00 c.37.1.6 99452 1t9hA 307 64.70 b.40.4.5,c.37.1.8 112358,112359 1w9iA 770 68.42 1vqoV 71 69.64 a.2.2.1 120383 1bifA 469 69.70 c.37.1.7,c.60.1.4 31961,34003 3b9pA 297 70.56 1knqA 175 70.77 c.37.1.17 72786 1br2A 791 70.93 b.34.3.1,c.37.1.9 24558,32155 1f2tA 149 71.15 c.37.1.12 32373 1vplA 256 71.15 c.37.1.12 113966 1lv7A 257 72.90 c.37.1.20 78232 2qi9C 249 73.22 2bbsA 290 75.49 1odfA 290 75.52 c.37.1.6 92782 1dciA 275 76.80 c.14.1.3 30918 2hf9A 226 77.30 2ookA 127 77.70 1zjrA 211 78.15 2qxlA 658 78.92 1z5zA 271 79.58 c.37.1.19 124499 1ng1 294 79.99 1s8eA 333 80.93 d.159.1.4 105368 1k77A 260 81.56 c.1.15.5 72096 1viaA 175 81.70 c.37.1.2 100754 2r7aA 256 84.15 1a71A 374 84.30 b.35.1.2,c.2.1.1 24673,29689 1zinA 217 85.93 c.37.1.1,g.41.2.1 31915,45178 2pjzA 263 86.00 1yqtA 538 87.09 2feaA 236 88.23 c.108.1.20 133327 2uubI 128 89.18