# List of top-scoring protein chains for t2k-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2p67A 341 0.03152 1oe0A 230 0.04520 c.37.1.1 92788 2z0hA 197 0.2062 2qm8A 337 0.2888 2vp4A 230 0.4558 2pbrA 195 0.5296 1gtvA 214 0.6529 c.37.1.1 70537 2p5tB 253 1.014 1s96A 219 1.064 c.37.1.1 98740 1rz3A 201 1.084 c.37.1.6 98132 1ukz 203 1.185 1np6A 174 1.204 c.37.1.10 85954 1nn5A 215 1.496 c.37.1.1 85892 1s4qA 228 1.605 c.37.1.1 98507 2f1rA 171 1.666 5tmpA 213 1.691 c.37.1.1 31931 1z8fA 228 1.843 2gzaA 361 1.941 2bwjA 199 2.055 1znwA 207 2.137 c.37.1.1 125412 2ax4A 198 2.327 2an9A 207 2.516 c.37.1.1 127037 1p9rA 418 2.577 c.37.1.11 94399 2pezA 179 2.738 2j41A 207 2.775 1zm7A 230 3.029 2q8pA 260 4.295 2qy9A 309 4.603 1e9eA 215 4.741 c.37.1.1 64810 1tq6A 413 5.008 c.37.1.8 107202 1qf9A 194 5.792 c.37.1.1 31848 2oap1 511 5.874 1gky 187 5.917 1n2zA 245 6.038 c.92.2.2 79865 1ex7A 186 6.614 c.37.1.1 59537 1h65A 270 6.819 c.37.1.8 65640 2ga8A 359 6.896 2qorA 204 7.206 1vmaA 306 7.362 a.24.13.1,c.37.1.10 108887,108888 1n4aA 252 7.395 c.92.2.2 85317 1esmA 316 7.970 c.37.1.6 31953 1njgA 250 8.095 c.37.1.20 85785 4tmkA 213 8.528 c.37.1.1 31930 1ukzA 203 9.536 c.37.1.1 31840 1xjcA 169 9.573 c.37.1.10 115387 1p5zB 263 9.658 c.37.1.1 87815 1in4A 334 9.930 a.4.5.11,c.37.1.20 62597,62598 2cbzA 237 10.01 2px0A 296 10.82 1e4yA 214 11.34 c.37.1.1,g.41.2.1 31901,45181 1kdoA 227 11.44 c.37.1.1 68478 3b9qA 302 11.69 3tmkA 216 12.00 c.37.1.1 31920 2ff7A 247 12.13 c.37.1.12 133377 2axpA 173 12.52 c.37.1.1 127497 2qt1A 207 12.53 1fl9A 161 14.72 c.37.1.18 70137 1kagA 173 15.24 c.37.1.2 72249 1zin 217 15.36 1sq5A 308 15.51 c.37.1.6 105882 2c95A 196 16.13 1akyA 220 16.18 c.37.1.1,g.41.2.1 31896,45197 2bdtA 189 16.19 c.37.1.25 128344 2q3fA 181 16.40 3c8uA 208 16.92 1htwA 158 16.92 c.37.1.18 71083 2yvuA 186 17.34 1z6gA 218 17.76 2pmkA 243 17.80 1b8aA 438 17.84 b.40.4.1,d.104.1.1 25244,40765 1kngA 156 17.90 c.47.1.10 72777 2og2A 359 17.90 1qhxA 178 19.51 c.37.1.3 31936 2ccjA 205 19.63 2ixeA 271 19.74 1bif 469 22.97 1yuwA 554 23.79 b.130.1.1,c.55.1.1,c.55.1.1 124070,124071,124072 2pt7A 330 24.60 3bifA 468 24.77 c.37.1.7,c.60.1.4 31962,34008 1jr3A 373 25.71 a.80.1.1,c.37.1.20 63245,63246 1qhsA 178 25.83 c.37.1.3 31938 1uj2A 252 26.82 c.37.1.6 99452 1t9hA 307 27.95 b.40.4.5,c.37.1.8 112358,112359 1t71A 281 28.68 d.159.1.9 112283 1kgdA 180 29.13 c.37.1.1 68582 1h1nA 305 29.78 c.1.8.3 70855 1d6jA 211 31.06 c.37.1.4 31940 2rhmA 193 34.08 1nksA 194 35.60 c.37.1.1 31886 1gz0A 253 37.80 c.116.1.1,d.79.3.3 76391,76392 1zinA 217 38.83 c.37.1.1,g.41.2.1 31915,45178 2bkhA 814 41.20 1ji0A 240 41.62 c.37.1.12 71665 1w9iA 770 42.42 2b8wA 328 42.44 3b9pA 297 44.35 1fj2A 232 46.84 c.69.1.14 34720 2vqeI 128 48.06 1zu4A 320 49.07 1axeA 374 50.12 b.35.1.2,c.2.1.1 24681,29697 2eyuA 261 50.27 2uubI 128 51.28 1in6A 334 55.00 a.4.5.11,c.37.1.20 62601,62602 1m7gA 211 55.55 c.37.1.4 78724 2qgnA 322 55.81 2plrA 213 58.62 1rkbA 173 61.02 c.37.1.1 111854 1efdN 266 61.10 c.92.2.1 35597 1f2tA 149 61.14 c.37.1.12 32373 1odfA 290 62.04 c.37.1.6 92782 1svsA 353 63.04 c.37.1.8 106051 2v26A 784 65.36 2nq2C 253 65.48 1ewsA 32 66.88 g.9.1.1 59534 2g09A 297 71.47 1y63A 184 72.54 c.37.1.1 116494 2etvA 346 73.70 c.92.2.4 132372 2fp8A 322 73.76 1bifA 469 74.04 c.37.1.7,c.60.1.4 31961,34003 1ckeA 227 74.06 c.37.1.1 31846 1sgwA 214 74.74 c.37.1.12 105541 2c9oA 456 83.59 2obaA 138 83.86 1viaA 175 85.86 c.37.1.2 100754 1j7xA 302 87.46 c.14.1.2 66425 1xewX 182 88.01 c.37.1.12 115235 1j8mF 297 88.25 a.24.13.1,c.37.1.10 62742,62743 3be4A 217 88.70 1ee2A 373 89.19 b.35.1.2,c.2.1.1 24663,29679