# List of top-scoring protein chains for t2k-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2rhmA 193 1.499 2plrA 213 1.943 2p67A 341 1.988 2yvuA 186 2.709 1s96A 219 3.149 c.37.1.1 98740 2axpA 173 3.376 c.37.1.1 127497 1oe0A 230 3.404 c.37.1.1 92788 1z8fA 228 3.949 2z0hA 197 4.125 2bwjA 199 4.221 1rz3A 201 4.270 c.37.1.6 98132 1s4qA 228 4.497 c.37.1.1 98507 1rkbA 173 4.569 c.37.1.1 111854 1y63A 184 4.680 c.37.1.1 116494 2an9A 207 5.139 c.37.1.1 127037 1kagA 173 5.314 c.37.1.2 72249 2pezA 179 5.765 1in4A 334 6.256 a.4.5.11,c.37.1.20 62597,62598 2vp4A 230 6.595 2ax4A 198 6.778 2c95A 196 7.711 1ukz 203 7.808 1ukzA 203 8.512 c.37.1.1 31840 1zm7A 230 9.347 2qt1A 207 10.04 1znwA 207 10.46 c.37.1.1 125412 2gzaA 361 10.96 1h65A 270 11.08 c.37.1.8 65640 2qorA 204 11.25 2pbrA 195 13.52 2qm8A 337 13.65 5tmpA 213 14.41 c.37.1.1 31931 1vmaA 306 15.39 a.24.13.1,c.37.1.10 108887,108888 3c8uA 208 16.07 1fj2A 232 16.97 c.69.1.14 34720 1nn5A 215 18.56 c.37.1.1 85892 1p9rA 418 18.73 c.37.1.11 94399 1yuwA 554 18.85 b.130.1.1,c.55.1.1,c.55.1.1 124070,124071,124072 4tmkA 213 19.48 c.37.1.1 31930 1gtvA 214 20.86 c.37.1.1 70537 1in6A 334 20.94 a.4.5.11,c.37.1.20 62601,62602 1ex7A 186 26.82 c.37.1.1 59537 1np6A 174 27.88 c.37.1.10 85954 1gky 187 28.37 1e9eA 215 29.05 c.37.1.1 64810 1e4yA 214 29.22 c.37.1.1,g.41.2.1 31901,45181 1htwA 158 29.66 c.37.1.18 71083 1njgA 250 33.15 c.37.1.20 85785 1h1nA 305 33.34 c.1.8.3 70855 1kdoA 227 34.11 c.37.1.1 68478 2ff7A 247 34.68 c.37.1.12 133377 2j41A 207 34.69 2qy9A 309 35.74 1tq6A 413 37.03 c.37.1.8 107202 2bdtA 189 37.83 c.37.1.25 128344 1z6gA 218 43.82 1m7gA 211 48.09 c.37.1.4 78724 2cbzA 237 50.20 1mwmA 320 51.31 c.55.1.1,c.55.1.1 79580,79581 2feaA 236 51.72 c.108.1.20 133327 2pmkA 243 51.98 2ga8A 359 52.16 1bhgA 613 52.40 b.1.4.1,b.18.1.5,c.1.8.3 22161,23766,28889 1uj2A 252 52.44 c.37.1.6 99452 2f1rA 171 54.54 1p5zB 263 58.92 c.37.1.1 87815 3b9qA 302 59.90 1knqA 175 60.50 c.37.1.17 72786 2i3dA 249 60.51 2pt5A 168 62.97 1svjA 156 64.81 d.220.1.1 106049 2iyvA 184 65.18 c.37.1.2 137812 1qhsA 178 67.06 c.37.1.3 31938 2pt7A 330 67.61 1mnaA 298 70.56 c.69.1.22 79322 2cxxA 190 73.80 c.37.1.8 131013 2ixeA 271 77.16 3bifA 468 77.51 c.37.1.7,c.60.1.4 31962,34008 1kezA 300 78.44 c.69.1.22 68546 1ak2A 233 80.62 c.37.1.1,g.41.2.1 31894,45195 1qf9A 194 81.82 c.37.1.1 31848 1kay 381 84.75 1jnyA 435 88.88 b.43.3.1,b.44.1.1,c.37.1.8 66982,66983,66984