# List of top-scoring protein chains for t2k-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1oe0A 230 0.2632 c.37.1.1 92788 2vp4A 230 0.4778 1in4A 334 2.001 a.4.5.11,c.37.1.20 62597,62598 1zm7A 230 2.918 5tmpA 213 2.925 c.37.1.1 31931 2axpA 173 3.284 c.37.1.1 127497 2p67A 341 4.668 2an9A 207 4.887 c.37.1.1 127037 1kagA 173 5.292 c.37.1.2 72249 1ukz 203 6.129 1s4qA 228 6.342 c.37.1.1 98507 1rz3A 201 6.536 c.37.1.6 98132 2c95A 196 7.421 2qorA 204 7.452 2pbrA 195 7.512 1z8fA 228 7.810 1rkbA 173 8.299 c.37.1.1 111854 1ukzA 203 8.477 c.37.1.1 31840 2z0hA 197 8.526 1in6A 334 8.746 a.4.5.11,c.37.1.20 62601,62602 4tmkA 213 9.569 c.37.1.1 31930 1qf9A 194 9.776 c.37.1.1 31848 2qt1A 207 10.78 1uj2A 252 12.02 c.37.1.6 99452 1y63A 184 12.20 c.37.1.1 116494 2gzaA 361 12.39 1sq5A 308 13.25 c.37.1.6 105882 1p5zB 263 13.27 c.37.1.1 87815 1gtvA 214 14.10 c.37.1.1 70537 2ax4A 198 14.13 2qm8A 337 14.54 1esmA 316 14.57 c.37.1.6 31953 1kdoA 227 14.64 c.37.1.1 68478 1p9rA 418 14.71 c.37.1.11 94399 1e9eA 215 14.93 c.37.1.1 64810 2yvuA 186 15.50 1nn5A 215 15.72 c.37.1.1 85892 1gky 187 15.98 1s96A 219 16.15 c.37.1.1 98740 1ex7A 186 16.52 c.37.1.1 59537 2bwjA 199 16.60 1znwA 207 17.41 c.37.1.1 125412 2pezA 179 17.88 2rhmA 193 18.09 2ccjA 205 26.71 3c8uA 208 29.09 3b9pA 297 29.28 2ga8A 359 30.66 1vmaA 306 30.98 a.24.13.1,c.37.1.10 108887,108888 1tq6A 413 34.41 c.37.1.8 107202 1qhxA 178 34.58 c.37.1.3 31936 1fj2A 232 35.13 c.69.1.14 34720 1lv7A 257 35.48 c.37.1.20 78232 1kezA 300 35.75 c.69.1.22 68546 1j33A 335 39.44 c.39.1.1 77069 1h1nA 305 39.91 c.1.8.3 70855 1t71A 281 42.57 d.159.1.9 112283 1xwiA 322 44.22 2plrA 213 44.98 1viaA 175 45.42 c.37.1.2 100754 1np6A 174 45.68 c.37.1.10 85954 1qhsA 178 45.77 c.37.1.3 31938 1bhgA 613 47.00 b.1.4.1,b.18.1.5,c.1.8.3 22161,23766,28889 1xvlA 321 48.65 c.92.2.2 122380 2bdtA 189 49.33 c.37.1.25 128344 1s8eA 333 50.08 d.159.1.4 105368 2p5tB 253 52.13 1mnaA 298 53.04 c.69.1.22 79322 2j41A 207 53.83 2q8pA 260 56.75 1wx1A 335 57.49 1n2zA 245 63.24 c.92.2.2 79865 1svjA 156 64.16 d.220.1.1 106049 1gz0A 253 66.22 c.116.1.1,d.79.3.3 76391,76392 2eyuA 261 66.48 2qy9A 309 67.40 1ltqA 301 67.45 c.108.1.9,c.37.1.1 78208,78209 1knqA 175 68.34 c.37.1.17 72786 1m7gA 211 69.06 c.37.1.4 78724 2jbwA 386 74.42 1z6gA 218 76.93 2cbzA 237 77.00 1hqcA 324 78.10 a.4.5.11,c.37.1.20 16127,32424 2fukA 220 79.40 2ebn 289 80.34 1njgA 250 81.32 c.37.1.20 85785 1yuwA 554 82.54 b.130.1.1,c.55.1.1,c.55.1.1 124070,124071,124072 3tmkA 216 83.49 c.37.1.1 31920 1e4yA 214 83.50 c.37.1.1,g.41.2.1 31901,45181 2f1rA 171 84.24 1yzyA 413 86.34 c.146.1.1 124292 1e32A 458 86.95 b.52.2.3,c.37.1.20,d.31.1.1 59183,59184,59185