# List of top-scoring protein chains for t2k-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2an9A 207 0.4212 c.37.1.1 127037 4tmkA 213 2.077 c.37.1.1 31930 1gky 187 2.271 1s96A 219 2.426 c.37.1.1 98740 1xrjA 261 2.576 c.37.1.6 122256 1ex7A 186 2.929 c.37.1.1 59537 1p5zB 263 2.990 c.37.1.1 87815 1z8fA 228 3.854 1rlmA 271 4.373 c.108.1.10 111860 1kdoA 227 4.392 c.37.1.1 68478 2qorA 204 4.608 5tmpA 213 5.813 c.37.1.1 31931 1z6gA 218 5.834 1s4qA 228 5.842 c.37.1.1 98507 1t6cA 315 5.933 c.55.1.8,c.55.1.8 106558,106559 2plrA 213 6.391 2ccjA 205 6.997 1znwA 207 7.238 c.37.1.1 125412 1sur 215 7.583 2axpA 173 9.642 c.37.1.1 127497 1surA 215 9.732 c.26.2.2 31620 1wx1A 335 13.43 2qt1A 207 15.04 1y63A 184 15.14 c.37.1.1 116494 1j33A 335 15.44 c.39.1.1 77069 1y7oA 218 15.73 c.14.1.1 122701 2pezA 179 16.01 1oe0A 230 16.18 c.37.1.1 92788 2yvuA 186 16.32 2bdtA 189 18.12 c.37.1.25 128344 2ax4A 198 19.08 1zuwA 272 19.92 2hoeA 380 20.68 a.4.5.63,c.55.1.10,c.55.1.10 136639,136640,136641 2pbrA 195 22.90 2j6vA 301 24.29 2o14A 375 25.08 1e9eA 215 25.79 c.37.1.1 64810 3bczA 293 26.31 1qf9A 194 26.88 c.37.1.1 31848 1rkbA 173 27.09 c.37.1.1 111854 2hf2A 283 27.24 1lwjA 441 27.69 b.71.1.1,c.1.8.1 74303,74304 1knqA 175 27.70 c.37.1.17 72786 1kgdA 180 27.96 c.37.1.1 68582 1kid 203 28.00 1d0vA 356 30.03 c.39.1.1 32476 1kidA 203 32.34 c.8.5.1 30771 1uj2A 252 35.34 c.37.1.6 99452 1zjaA 557 35.61 3be7A 408 35.74 1yzyA 413 36.12 c.146.1.1 124292 1l5oA 356 36.25 c.39.1.1 77711 1qp8A 303 38.77 c.2.1.4,c.23.12.1 30092,31352 1rkqA 282 40.10 c.108.1.10 97621 1chmA 401 40.21 c.55.2.1,d.127.1.1 33545,41142 3cggA 195 40.28 2cjgA 449 42.00 2dwuA 276 43.34 1kpgA 287 43.36 c.66.1.18 68735 2jepA 395 44.00 1w23A 360 45.88 c.67.1.4 114088 2cu2A 337 46.30 1a5tA 334 46.50 a.80.1.1,c.37.1.20 18450,32423 2f7tA 227 46.61 1ymqA 261 46.76 c.108.1.10 123707 1u6zA 513 46.79 a.211.1.5,c.55.1.8,c.55.1.8 119608,119609,119610 2ps2A 371 47.36 1ckeA 227 49.25 c.37.1.1 31846 2a5hA 416 49.68 1d8wA 426 53.18 c.1.15.2 29394 2p5tB 253 53.21 1nrwA 288 53.37 c.108.1.10 86128 1zbsA 291 53.40 c.55.1.5,c.55.1.5 124870,124871 2ahrA 259 53.44 a.100.1.10,c.2.1.6 126775,126776 2aw5A 541 57.37 1o0sA 605 57.48 c.2.1.7,c.58.1.3 86540,86541 1tq4A 413 58.26 c.37.1.8 107201 3b4uA 294 60.52 3cerA 343 61.13 2hhcA 330 61.60 2exrA 524 61.87 1j5sA 463 63.33 c.1.9.8 71580 2q5cA 196 63.58 2j41A 207 63.72 1qv9A 283 64.60 c.127.1.1 96356 2c3zA 222 65.68 1wkbA 810 66.36 1vbuA 328 66.42 c.1.8.3 119963 1br2A 791 66.45 b.34.3.1,c.37.1.9 24558,32155 3cnyA 301 68.13 1tr1A 447 68.15 c.1.8.4 28957 1e4iA 447 68.59 c.1.8.4 59225 1tph1 247 69.12 1tpfA 250 69.20 c.1.1.1 28467 2qh9A 184 69.71 2hlkA 255 70.49 2q8xA 331 71.77 1rlr 761 72.16 1h4pA 408 72.18 c.1.8.3 90617 1z7aA 308 73.42 c.6.2.6 124591 1cw0A 155 73.47 c.52.1.15 33333 2e2oA 299 75.43 1yaaA 412 75.52 c.67.1.1 34280 1l1eA 287 76.00 c.66.1.18 73454 1rloA 271 76.06 c.108.1.10 111864 1t0hB 224 76.24 c.37.1.1 106208 1amk 251 76.65 2f3yA 148 76.67 2a5yB 549 76.95 1gowA 489 77.25 c.1.8.4 28981 1kv5A 250 77.50 c.1.1.1 73052 2j0pA 345 77.90 e.62.1.1 137903 1n55A 251 77.96 c.1.1.1 80007 2pceA 386 78.00 1a5t 334 79.43 1ajsA 412 79.75 c.67.1.1 34276 1y81A 138 80.90 c.2.1.8 122731 2dp3A 257 81.79 2p6pA 384 82.73 1uwsA 489 84.14 c.1.8.4 108073 2fnaA 357 85.70 a.4.5.11,c.37.1.20 133809,133810 1ny6A 267 85.95 c.37.1.20 92321 1n2eA 300 86.43 c.26.1.4 85268 1nn5A 215 86.83 c.37.1.1 85892 2odaA 196 87.59 2j27A 250 87.60 2jfnA 285 88.09