# List of top-scoring protein chains for t06-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1gky 187 6.80e-10 1ex7A 186 2.09e-09 c.37.1.1 59537 1kjwA 295 2.44e-09 b.34.2.1,c.37.1.1 68643,68644 2qorA 204 2.58e-09 2j41A 207 1.26e-08 1znwA 207 1.59e-08 c.37.1.1 125412 1kgdA 180 1.77e-08 c.37.1.1 68582 2pbrA 195 2.66e-07 1s96A 219 1.35e-06 c.37.1.1 98740 2an9A 207 1.77e-06 c.37.1.1 127037 4tmkA 213 2.75e-06 c.37.1.1 31930 1t0hB 224 3.05e-06 c.37.1.1 106208 1gtvA 214 9.14e-06 c.37.1.1 70537 1p5zB 263 1.26e-05 c.37.1.1 87815 2ccjA 205 2.84e-05 1qf9A 194 4.77e-05 c.37.1.1 31848 2z0hA 197 5.58e-05 1ki9A 192 5.99e-05 c.37.1.1 84404 2c95A 196 6.59e-05 1p6xA 334 6.72e-05 c.37.1.1 94195 1ukzA 203 7.17e-05 c.37.1.1 31840 2bwjA 199 8.59e-05 1khtA 192 0.000104 c.37.1.1 84401 2vp4A 230 0.000107 2cdnA 201 0.000187 c.37.1.1 130289 1ukz 203 0.000253 2qt1A 207 0.000260 1e2kA 331 0.000464 c.37.1.1 31854 1e4yA 214 0.000593 c.37.1.1,g.41.2.1 31901,45181 3be4A 217 0.000629 1akyA 220 0.000739 c.37.1.1,g.41.2.1 31896,45197 1zin 217 0.000764 1of1A 376 0.000785 c.37.1.1 103924 2ak3A 226 0.000888 c.37.1.1,g.41.2.1 31892,45193 1ak2A 233 0.001115 c.37.1.1,g.41.2.1 31894,45195 1vhtA 218 0.001309 c.37.1.1 100700 2bdtA 189 0.001390 c.37.1.25 128344 1qhxA 178 0.001454 c.37.1.3 31936 2f6rA 281 0.001473 2rgxA 206 0.001480 1y63A 184 0.001504 c.37.1.1 116494 2plrA 213 0.001629 2eu8A 216 0.001751 1zm7A 230 0.001774 2rhmA 193 0.002086 2axpA 173 0.002348 c.37.1.1 127497 1knqA 175 0.002491 c.37.1.17 72786 1zd8A 227 0.003127 2pezA 179 0.003159 2yvuA 186 0.003563 1uj2A 252 0.003658 c.37.1.6 99452 1nn5A 215 0.004065 c.37.1.1 85892 1zinA 217 0.005240 c.37.1.1,g.41.2.1 31915,45178 1kdoA 227 0.007191 c.37.1.1 68478 1e6cA 173 0.008375 c.37.1.2 59296 1xrjA 261 0.01055 c.37.1.6 122256 1rkbA 173 0.01119 c.37.1.1 111854 1ckeA 227 0.01131 c.37.1.1 31846 1ltqA 301 0.01357 c.108.1.9,c.37.1.1 78208,78209 2pt5A 168 0.02111 3c8uA 208 0.02174 1jjvA 206 0.02253 c.37.1.1 71698 1gvnB 287 0.02566 c.37.1.21 76354 3tmkA 216 0.03547 c.37.1.1 31920 2iyvA 184 0.03579 c.37.1.2 137812 2grjA 192 0.03730 1rz3A 201 0.04622 c.37.1.6 98132 1viaA 175 0.04654 c.37.1.2 100754 2p67A 341 0.04944 1w5tA 412 0.05026 a.4.5.11,c.37.1.20 114255,114256 2ax4A 198 0.05651 1m7gA 211 0.06052 c.37.1.4 78724 1a7jA 290 0.08255 c.37.1.6 31952 2p5tB 253 0.08562 2g1kA 176 0.08928 c.37.1.2 134519 1ly1A 181 0.09631 c.37.1.1 74334 2qgnA 322 0.09683 1zuhA 168 0.1255 1xjcA 169 0.1268 c.37.1.10 115387 2f1rA 171 0.1573 3crrA 323 0.1757 1in6A 334 0.2224 a.4.5.11,c.37.1.20 62601,62602 1np6A 174 0.2736 c.37.1.10 85954 1kagA 173 0.3469 c.37.1.2 72249 1in4A 334 0.4213 a.4.5.11,c.37.1.20 62597,62598 2gzaA 361 0.4542 1g6oA 330 0.5678 c.37.1.11 32430 1l2tA 235 0.6511 c.37.1.12 73514 2d2eA 250 0.6950 1g6hA 257 0.7113 c.37.1.12 60318 2qy9A 309 0.7756 2oap1 511 0.8668 2cbzA 237 0.8917 1a7j 290 0.9017 1bifA 469 0.9214 c.37.1.7,c.60.1.4 31961,34003 1lv7A 257 0.9912 c.37.1.20 78232 2pzeA 229 1.044 1ji0A 240 1.102 c.37.1.12 71665 2ff7A 247 1.246 c.37.1.12 133377 2bbsA 290 1.272 2pmkA 243 1.314 2qm8A 337 1.344 2eyuA 261 1.441 1sxjE 354 1.471 a.80.1.1,c.37.1.20 106089,106090 2a5yB 549 1.482 1sq5A 308 1.511 c.37.1.6 105882 1x6vA 630 1.551 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 1xx6A 191 1.575 c.37.1.24,g.39.1.14 116139,116140 1rj9A 304 1.599 a.24.13.1,c.37.1.10 97553,97554 2ze7A 253 1.627 3b9qA 302 1.721 1bif 469 1.732 1b0uA 262 1.763 c.37.1.12 32370 2vhjA 331 1.817 2pcjA 224 1.978 1vplA 256 2.171 c.37.1.12 113966 2ixeA 271 2.208 2nq2C 253 2.223 2pt7A 330 2.286 1xewX 182 2.293 c.37.1.12 115235 2bjvA 265 2.441 1fnnA 389 2.963 a.4.5.11,c.37.1.20 16129,32426 1z47A 355 3.048 2hf9A 226 3.198 2it1A 362 3.362 1d2nA 272 3.448 c.37.1.20 32428 1sgwA 214 3.566 c.37.1.12 105541 1sxjA 511 3.716 a.80.1.1,c.37.1.20 106081,106082 1g291 372 3.741 1htwA 158 3.775 c.37.1.18 71083 1nijA 318 3.826 c.37.1.10,d.237.1.1 85741,85742 2orwA 184 3.831 1oxxK 353 4.092 b.40.6.3,c.37.1.12 93715,93716 1zu4A 320 4.110 2qi9C 249 4.211 2ihyA 279 4.511 1tq4A 413 4.597 c.37.1.8 107201 1w44A 331 4.662 c.37.1.11 114147 1tueA 212 4.676 c.37.1.20 107323 1ye8A 178 5.483 c.37.1.11 123010 1yqtA 538 5.694 1njgA 250 6.056 c.37.1.20 85785 2qgzA 308 6.385 1z08A 170 6.394 c.37.1.8 124303 2fnaA 357 6.488 a.4.5.11,c.37.1.20 133809,133810 1sxjC 340 7.377 a.80.1.1,c.37.1.20 106085,106086 1odfA 290 7.465 c.37.1.6 92782 3c4vA 426 7.530 1a5tA 334 7.930 a.80.1.1,c.37.1.20 18450,32423 2og2A 359 8.095 2ozeA 298 8.805 2f9fA 177 8.984 c.87.1.8 133161 2q3hA 201 9.087 1g8pA 350 9.187 c.37.1.20 60376 1pujA 282 9.249 c.37.1.8 88294 3bwdD 182 9.709 2pjzA 263 9.819 1n2zA 245 10.13 c.92.2.2 79865 3b9pA 297 10.15 1u94A 356 10.29 c.37.1.11,d.48.1.1 107743,107744 1dekA 241 10.66 c.37.1.1 31842 2akaB 299 10.66 c.37.1.8 126914 1ky3A 182 10.73 c.37.1.8 73193 1xd8A 289 10.84 1n4aA 252 11.03 c.92.2.2 85317 1knxA 312 11.30 c.98.2.1,c.91.1.2 77459,77460 1ls1A 295 11.70 a.24.13.1,c.37.1.10 78170,78171 1gl6A 436 12.06 c.37.1.11 70259 1e9rA 437 12.22 c.37.1.11 64827 1j8mF 297 12.31 a.24.13.1,c.37.1.10 62742,62743 1a5t 334 13.15 3c5cA 187 13.50 2c9oA 456 13.64 2r44A 331 13.90 1ko7A 314 13.93 c.98.2.1,c.91.1.2 72797,72798 1mh1A 186 14.45 c.37.1.8 32002 2chgA 226 15.77 1m7bA 184 15.82 c.37.1.8 74572 1ihuA 589 16.03 c.37.1.10,c.37.1.10 62394,62395 2c8vA 288 16.13 c.37.1.10 130128 2ga8A 359 16.17 2bkhA 814 16.98 2v26A 784 16.98 1f2tA 149 18.40 c.37.1.12 32373 1efdN 266 18.41 c.92.2.1 35597 1mucA 373 18.83 c.1.11.2,d.54.1.1 29236,38880 2zejA 184 19.18 2afhE 289 19.93 c.37.1.10 126683 1w9iA 770 20.29 1w4rA 195 20.40 2b8wA 328 20.43 2dpxA 174 20.60 3bs4A 260 21.02 2g6bA 180 21.44 c.37.1.8 134701 2gjsA 176 21.71 c.37.1.8 135287 1ju2A 536 21.78 c.3.1.2,d.16.1.1 77169,77170 1w7jA 795 22.02 b.34.3.1,c.37.1.9 120688,120689 2gk6A 624 22.24 1zj6A 187 23.10 c.37.1.8 125145 1ionA 243 23.93 c.37.1.10 62633 2nwhA 317 24.20 2r2aA 199 24.35 2p5sA 199 25.47 2yv5A 302 25.54 1tca 317 26.38 1cp2A 269 28.44 c.37.1.10 32269 2gxaA 274 29.46 2r7aA 256 29.55 1wf3A 301 29.90 c.37.1.8,d.52.3.1 114574,114575 1lw7A 365 30.07 c.26.1.3,c.37.1.1 74295,74296 2k3aA 155 30.71 2jrnA 163 30.74 1h65A 270 32.36 c.37.1.8 65640 2gcoA 201 32.99 2bekA 257 33.16 1jbkA 195 33.20 c.37.1.20 71631 1xp8A 366 33.88 c.37.1.11,d.48.1.1 115735,115736 2q8pA 260 34.40 1svmA 377 34.43 c.37.1.20 112126 2rexB 197 35.08 2o5vA 359 35.08 2hxsA 178 37.02 1b6g 310 37.30 1v4vA 376 37.37 c.87.1.3 100313 1nlfA 279 37.47 c.37.1.11 85850 1g3qA 237 37.79 c.37.1.10 60237 2iutA 574 38.12 1g55A 343 40.09 c.66.1.26 34247 1kngA 156 42.65 c.47.1.10 72777 2rebA 352 42.69 c.37.1.11,d.48.1.1 32282,38767 3bosA 242 43.41 2zadA 345 47.24 2o2gA 223 47.99 2p65A 187 48.01 1m5wA 243 48.99 c.1.24.1 84836 2efjA 384 49.30 2bm8A 236 50.09 c.66.1.50 128771 1z06A 189 50.45 c.37.1.8 124301 1pjrA 724 55.61 c.37.1.19,c.37.1.19 32391,32392 1yzqA 170 56.42 c.37.1.8 124286 1tcaA 317 57.94 c.69.1.17 34726 1u0jA 267 59.05 c.37.1.20 107546 2jbwA 386 59.81 3bfkA 181 60.82 1eg7A 557 61.02 c.37.1.10 32241 2gj8A 172 63.41 c.37.1.8 135270 2j8mA 172 63.75 3beoA 375 66.21 2qmoA 220 66.63 2b9hA 353 67.13 2oblA 347 67.34 1hl2A 297 67.53 c.1.10.1 83581 1rrmA 386 68.22 e.22.1.2 105081 3co5A 143 68.40 1zp4A 304 68.55 1g41A 444 71.44 c.37.1.20 32450 3cvoA 202 72.83 2c5aA 379 73.74 c.2.1.2 129894 2bmjA 178 74.22 c.37.1.8 128797 1o5zA 442 75.16 c.59.1.2,c.72.2.2 92530,92531 2fdxA 138 75.21 c.23.5.1 31192 2axtB 510 76.19 2chuA 296 76.25 c.92.2.4 130485 1vmaA 306 76.67 a.24.13.1,c.37.1.10 108887,108888 2dvzA 314 77.55 2f5xA 312 77.61 2hjgA 436 78.80 2qjwA 176 79.99 2gf9A 189 80.12 1vjzA 341 80.68 c.1.8.3 100838 1wbhA 214 81.39 c.1.10.1 120845 1vcoA 550 81.98 c.23.16.1,c.37.1.10 108508,108509 1jfrA 262 82.86 c.69.1.16 34724 1jixA 351 83.44 c.87.1.1 63081 2dpyA 438 83.55 2j7tA 302 86.04 3cwqA 209 87.29 1wcv1 257 89.05 1o6zA 303 89.60 c.2.1.5,d.162.1.1 81107,81108