# List of top-scoring protein chains for t06-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1gky 187 2.05e-08 1ex7A 186 5.39e-08 c.37.1.1 59537 2qorA 204 7.54e-08 1kjwA 295 1.01e-07 b.34.2.1,c.37.1.1 68643,68644 1znwA 207 2.36e-07 c.37.1.1 125412 2j41A 207 2.72e-07 1kgdA 180 3.57e-07 c.37.1.1 68582 2pbrA 195 8.29e-06 1t0hB 224 2.59e-05 c.37.1.1 106208 2an9A 207 2.66e-05 c.37.1.1 127037 1s96A 219 3.25e-05 c.37.1.1 98740 4tmkA 213 8.24e-05 c.37.1.1 31930 1gtvA 214 0.000143 c.37.1.1 70537 1p5zB 263 0.000170 c.37.1.1 87815 2ccjA 205 0.000173 1p6xA 334 0.000311 c.37.1.1 94195 1ki9A 192 0.000389 c.37.1.1 84404 1qf9A 194 0.000695 c.37.1.1 31848 1ukzA 203 0.000701 c.37.1.1 31840 2z0hA 197 0.000735 2vp4A 230 0.000783 2c95A 196 0.000812 2qt1A 207 0.000835 1khtA 192 0.000970 c.37.1.1 84401 1e2kA 331 0.000993 c.37.1.1 31854 1ukz 203 0.001628 1of1A 376 0.001648 c.37.1.1 103924 2bwjA 199 0.002054 2cdnA 201 0.002194 c.37.1.1 130289 1zm7A 230 0.003012 1y63A 184 0.004093 c.37.1.1 116494 1vhtA 218 0.004664 c.37.1.1 100700 3be4A 217 0.004754 2plrA 213 0.005596 2rgxA 206 0.007102 2rhmA 193 0.007564 2f6rA 281 0.008530 2axpA 173 0.008625 c.37.1.1 127497 1e4yA 214 0.008741 c.37.1.1,g.41.2.1 31901,45181 1akyA 220 0.01058 c.37.1.1,g.41.2.1 31896,45197 1zin 217 0.01250 1qhxA 178 0.01401 c.37.1.3 31936 2bdtA 189 0.01706 c.37.1.25 128344 1ak2A 233 0.01710 c.37.1.1,g.41.2.1 31894,45195 2ak3A 226 0.01855 c.37.1.1,g.41.2.1 31892,45193 1uj2A 252 0.02903 c.37.1.6 99452 1kdoA 227 0.03095 c.37.1.1 68478 2pezA 179 0.03113 2eu8A 216 0.03301 1zinA 217 0.03408 c.37.1.1,g.41.2.1 31915,45178 1zd8A 227 0.03498 1knqA 175 0.03943 c.37.1.17 72786 1e6cA 173 0.04124 c.37.1.2 59296 2yvuA 186 0.04536 1ckeA 227 0.04571 c.37.1.1 31846 1nn5A 215 0.04791 c.37.1.1 85892 1rz3A 201 0.05466 c.37.1.6 98132 1xrjA 261 0.05959 c.37.1.6 122256 1rkbA 173 0.06128 c.37.1.1 111854 2pt5A 168 0.07456 1gvnB 287 0.07749 c.37.1.21 76354 1jjvA 206 0.07789 c.37.1.1 71698 3c8uA 208 0.09099 2iyvA 184 0.1071 c.37.1.2 137812 1ltqA 301 0.1202 c.108.1.9,c.37.1.1 78208,78209 2grjA 192 0.1291 2p5tB 253 0.1324 3tmkA 216 0.1888 c.37.1.1 31920 1viaA 175 0.2044 c.37.1.2 100754 2p67A 341 0.2237 1m7gA 211 0.2420 c.37.1.4 78724 2g1kA 176 0.3378 c.37.1.2 134519 2ax4A 198 0.3649 1zuhA 168 0.5261 1ly1A 181 0.5461 c.37.1.1 74334 2qgnA 322 0.5948 3crrA 323 0.7658 1xjcA 169 0.9364 c.37.1.10 115387 1in6A 334 0.9412 a.4.5.11,c.37.1.20 62601,62602 1lv7A 257 0.9610 c.37.1.20 78232 1np6A 174 0.9756 c.37.1.10 85954 2f1rA 171 1.078 1in4A 334 1.088 a.4.5.11,c.37.1.20 62597,62598 1w5tA 412 1.226 a.4.5.11,c.37.1.20 114255,114256 1sq5A 308 1.237 c.37.1.6 105882 1kagA 173 1.247 c.37.1.2 72249 1a7jA 290 1.314 c.37.1.6 31952 2gzaA 361 1.435 1g6oA 330 1.584 c.37.1.11 32430 1g6hA 257 1.722 c.37.1.12 60318 1l2tA 235 1.733 c.37.1.12 73514 2oap1 511 1.787 2d2eA 250 2.033 2pzeA 229 2.081 2cbzA 237 2.365 1tq4A 413 2.595 c.37.1.8 107201 2nq2C 253 2.722 2qm8A 337 2.802 2a5yB 549 2.999 2bbsA 290 3.016 2ze7A 253 3.124 2eyuA 261 3.127 2ihyA 279 3.190 2ff7A 247 3.309 c.37.1.12 133377 1xewX 182 3.436 c.37.1.12 115235 2pt7A 330 3.654 1xx6A 191 3.705 c.37.1.24,g.39.1.14 116139,116140 2pmkA 243 3.822 2ixeA 271 3.929 1vplA 256 3.976 c.37.1.12 113966 2bjvA 265 3.982 3b9qA 302 4.121 2vhjA 331 4.206 1g291 372 4.255 1ji0A 240 4.322 c.37.1.12 71665 1zu4A 320 4.337 2it1A 362 4.581 2pcjA 224 4.722 1rj9A 304 4.779 a.24.13.1,c.37.1.10 97553,97554 1pujA 282 4.829 c.37.1.8 88294 2qy9A 309 4.867 1b0uA 262 5.053 c.37.1.12 32370 1htwA 158 5.468 c.37.1.18 71083 1tueA 212 5.555 c.37.1.20 107323 1sgwA 214 5.812 c.37.1.12 105541 2fnaA 357 5.983 a.4.5.11,c.37.1.20 133809,133810 1ye8A 178 6.116 c.37.1.11 123010 1x6vA 630 6.145 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 1z47A 355 6.343 2hf9A 226 6.356 1w44A 331 6.967 c.37.1.11 114147 2orwA 184 7.198 1g8pA 350 7.210 c.37.1.20 60376 2qi9C 249 7.356 2og2A 359 7.712 1a7j 290 7.976 1dekA 241 8.123 c.37.1.1 31842 1bifA 469 8.213 c.37.1.7,c.60.1.4 31961,34003 1d2nA 272 8.398 c.37.1.20 32428 1sxjA 511 8.906 a.80.1.1,c.37.1.20 106081,106082 1sxjE 354 9.435 a.80.1.1,c.37.1.20 106089,106090 1odfA 290 9.691 c.37.1.6 92782 1oxxK 353 9.699 b.40.6.3,c.37.1.12 93715,93716 2pjzA 263 10.60 2qgzA 308 10.67 2ga8A 359 10.67 1nijA 318 11.11 c.37.1.10,d.237.1.1 85741,85742 1z08A 170 11.15 c.37.1.8 124303 1fnnA 389 11.40 a.4.5.11,c.37.1.20 16129,32426 1gl6A 436 11.64 c.37.1.11 70259 2j69A 695 11.80 1ls1A 295 11.82 a.24.13.1,c.37.1.10 78170,78171 1zj6A 187 12.61 c.37.1.8 125145 1yqtA 538 12.75 1bif 469 13.35 1f6bA 198 14.33 c.37.1.8 64986 1njgA 250 14.87 c.37.1.20 85785 1knxA 312 15.08 c.98.2.1,c.91.1.2 77459,77460 1sxjC 340 15.57 a.80.1.1,c.37.1.20 106085,106086 1a5t 334 15.71 1ko7A 314 15.95 c.98.2.1,c.91.1.2 72797,72798 1a5tA 334 16.06 a.80.1.1,c.37.1.20 18450,32423 1ky3A 182 16.66 c.37.1.8 73193 2bm8A 236 18.11 c.66.1.50 128771 1svmA 377 19.05 c.37.1.20 112126 2akaB 299 20.12 c.37.1.8 126914 2c9oA 456 20.54 2v26A 784 21.47 2ozeA 298 22.60 2o5vA 359 23.14 1w9iA 770 23.53 3b9pA 297 23.92 2dpxA 174 23.94 1n2zA 245 23.95 c.92.2.2 79865 1n4aA 252 23.98 c.92.2.2 85317 2bkhA 814 24.82 1e9rA 437 25.28 c.37.1.11 64827 2q8pA 260 25.58 2chgA 226 25.62 1wf3A 301 27.10 c.37.1.8,d.52.3.1 114574,114575 2g6bA 180 28.13 c.37.1.8 134701 1u94A 356 28.15 c.37.1.11,d.48.1.1 107743,107744 2gjsA 176 28.40 c.37.1.8 135287 1xd8A 289 29.67 2f9fA 177 29.83 c.87.1.8 133161 2r2aA 199 29.85 3c5cA 187 31.20 3bwdD 182 31.65 1yzqA 170 32.35 c.37.1.8 124286 2c8vA 288 32.62 c.37.1.10 130128 1f2tA 149 33.82 c.37.1.12 32373 1cp2A 269 34.05 c.37.1.10 32269 2zejA 184 34.30 2b8wA 328 34.71 2k3aA 155 35.59 3beoA 375 38.02 2hxsA 178 38.64 2bekA 257 38.99 3bfkA 181 39.00 2r44A 331 39.31 1u0jA 267 40.19 c.37.1.20 107546 1j8mF 297 42.93 a.24.13.1,c.37.1.10 62742,62743 1w4rA 195 43.13 2p65A 187 43.41 3bosA 242 45.00 1h65A 270 45.31 c.37.1.8 65640 2iutA 574 46.40 1w7jA 795 46.74 b.34.3.1,c.37.1.9 120688,120689 2jrnA 163 46.86 2qjwA 176 48.23 1ionA 243 49.13 c.37.1.10 62633 2afhE 289 49.39 c.37.1.10 126683 1g3qA 237 52.30 c.37.1.10 60237 1tca 317 53.02 2rexB 197 53.50 2nwhA 317 56.51 2a5dA 175 57.51 c.37.1.8 126172 1z2aA 168 58.21 c.37.1.8 124374 2fz4A 237 58.69 c.37.1.19 134419 1r8sA 164 59.45 c.37.1.8 97247 2p5sA 199 59.48 2qu8A 228 61.84 1kngA 156 63.76 c.47.1.10 72777 1z06A 189 65.07 c.37.1.8 124301 2q3hA 201 66.76 1jalA 363 67.47 c.37.1.8,d.15.10.2 84138,84139 2h17A 181 67.73 2p74A 263 72.38 1efdN 266 72.55 c.92.2.1 35597 1nlfA 279 72.78 c.37.1.11 85850 2gj8A 172 73.62 c.37.1.8 135270 2hjgA 436 75.58 1jbkA 195 76.56 c.37.1.20 71631 2q3fA 181 76.67 2j7tA 302 76.74 1mh1A 186 77.47 c.37.1.8 32002 1wcv1 257 79.01 1o3yA 166 79.27 c.37.1.8 86618 2bcgY 206 79.51 c.37.1.8 128285 2gcoA 201 79.57 2ffqA 171 81.14 2r7aA 256 82.48 2dkhA 639 83.27 1mkyA 439 83.39 c.37.1.8,c.37.1.8,d.52.5.1 79250,79251,79252 1g38A 393 84.85 c.66.1.27,d.287.1.1 111567,111568 2qmoA 220 85.02 3bs4A 260 87.27 1mucA 373 87.72 c.1.11.2,d.54.1.1 29236,38880