# List of top-scoring protein chains for t06-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1gky 187 5.59e-06 1ex7A 186 1.11e-05 c.37.1.1 59537 2qorA 204 1.61e-05 1znwA 207 1.80e-05 c.37.1.1 125412 1kjwA 295 2.52e-05 b.34.2.1,c.37.1.1 68643,68644 2j41A 207 3.10e-05 1kgdA 180 6.35e-05 c.37.1.1 68582 2pbrA 195 0.000750 1s96A 219 0.001069 c.37.1.1 98740 2an9A 207 0.001397 c.37.1.1 127037 1t0hB 224 0.001822 c.37.1.1 106208 4tmkA 213 0.002111 c.37.1.1 31930 1p5zB 263 0.004509 c.37.1.1 87815 2ccjA 205 0.007093 1qf9A 194 0.008404 c.37.1.1 31848 1ki9A 192 0.01063 c.37.1.1 84404 1ukzA 203 0.01470 c.37.1.1 31840 2qt1A 207 0.01510 2z0hA 197 0.01648 2vp4A 230 0.01651 1gtvA 214 0.01660 c.37.1.1 70537 1p6xA 334 0.02196 c.37.1.1 94195 2c95A 196 0.02259 1khtA 192 0.02423 c.37.1.1 84401 2cdnA 201 0.03207 c.37.1.1 130289 1ukz 203 0.03506 1zm7A 230 0.03826 2axpA 173 0.04102 c.37.1.1 127497 1vhtA 218 0.05493 c.37.1.1 100700 2bwjA 199 0.05820 2plrA 213 0.06366 1y63A 184 0.06782 c.37.1.1 116494 2rhmA 193 0.07152 1of1A 376 0.07286 c.37.1.1 103924 1e4yA 214 0.07559 c.37.1.1,g.41.2.1 31901,45181 1e2kA 331 0.07722 c.37.1.1 31854 3be4A 217 0.08139 1qhxA 178 0.0998 c.37.1.3 31936 2f6rA 281 0.1026 2bdtA 189 0.1261 c.37.1.25 128344 2pezA 179 0.1349 2rgxA 206 0.1391 1ak2A 233 0.1810 c.37.1.1,g.41.2.1 31894,45195 2eu8A 216 0.1960 1zin 217 0.2076 1knqA 175 0.2113 c.37.1.17 72786 2yvuA 186 0.2289 2ak3A 226 0.2382 c.37.1.1,g.41.2.1 31892,45193 1uj2A 252 0.2386 c.37.1.6 99452 1xrjA 261 0.2405 c.37.1.6 122256 1akyA 220 0.2456 c.37.1.1,g.41.2.1 31896,45197 1kdoA 227 0.2728 c.37.1.1 68478 1ckeA 227 0.2742 c.37.1.1 31846 2pt5A 168 0.3148 1nn5A 215 0.3723 c.37.1.1 85892 3c8uA 208 0.3866 1e6cA 173 0.4228 c.37.1.2 59296 1rkbA 173 0.4261 c.37.1.1 111854 1jjvA 206 0.4271 c.37.1.1 71698 2qgnA 322 0.4289 1zinA 217 0.4442 c.37.1.1,g.41.2.1 31915,45178 2iyvA 184 0.4448 c.37.1.2 137812 1zd8A 227 0.4484 3tmkA 216 0.4663 c.37.1.1 31920 2p5tB 253 0.5525 1rz3A 201 0.5905 c.37.1.6 98132 2grjA 192 0.7893 2ax4A 198 0.9210 2p67A 341 0.9465 1ltqA 301 0.9535 c.108.1.9,c.37.1.1 78208,78209 1m7gA 211 1.061 c.37.1.4 78724 1viaA 175 1.116 c.37.1.2 100754 1ly1A 181 1.125 c.37.1.1 74334 1gvnB 287 1.153 c.37.1.21 76354 1zuhA 168 1.555 2g1kA 176 1.646 c.37.1.2 134519 1ji0A 240 2.470 c.37.1.12 71665 1lv7A 257 3.012 c.37.1.20 78232 1xjcA 169 3.227 c.37.1.10 115387 2a5yB 549 3.323 1kagA 173 3.895 c.37.1.2 72249 2eyuA 261 3.975 3crrA 323 4.196 2gzaA 361 4.665 1w5tA 412 4.865 a.4.5.11,c.37.1.20 114255,114256 1np6A 174 5.278 c.37.1.10 85954 2pt7A 330 5.366 2f1rA 171 5.571 1l2tA 235 5.792 c.37.1.12 73514 2og2A 359 6.030 1xx6A 191 6.080 c.37.1.24,g.39.1.14 116139,116140 2d2eA 250 6.106 1a7jA 290 6.429 c.37.1.6 31952 1in6A 334 6.606 a.4.5.11,c.37.1.20 62601,62602 3b9qA 302 6.679 1g6hA 257 6.975 c.37.1.12 60318 1g6oA 330 7.100 c.37.1.11 32430 1sxjA 511 7.395 a.80.1.1,c.37.1.20 106081,106082 1d2nA 272 7.758 c.37.1.20 32428 1in4A 334 7.983 a.4.5.11,c.37.1.20 62597,62598 1zu4A 320 8.170 1gl6A 436 8.205 c.37.1.11 70259 2qm8A 337 8.898 2ff7A 247 8.903 c.37.1.12 133377 2hf9A 226 9.423 1htwA 158 9.580 c.37.1.18 71083 2cbzA 237 9.825 2ze7A 253 9.904 1b0uA 262 10.02 c.37.1.12 32370 2qy9A 309 10.05 1sq5A 308 10.28 c.37.1.6 105882 1vplA 256 10.97 c.37.1.12 113966 2bjvA 265 11.25 2o5vA 359 11.36 2nq2C 253 11.38 2orwA 184 11.68 2ihyA 279 12.06 1tueA 212 12.17 c.37.1.20 107323 2pmkA 243 12.25 1h65A 270 12.69 c.37.1.8 65640 2ixeA 271 13.32 1g291 372 13.46 1sxjE 354 13.93 a.80.1.1,c.37.1.20 106089,106090 1sgwA 214 13.94 c.37.1.12 105541 2j69A 695 14.04 1x6vA 630 14.05 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 2pcjA 224 14.14 2pzeA 229 14.32 1pujA 282 14.47 c.37.1.8 88294 2it1A 362 15.61 2qi9C 249 16.29 2vhjA 331 16.55 1e9rA 437 16.98 c.37.1.11 64827 1xewX 182 17.30 c.37.1.12 115235 1odfA 290 18.32 c.37.1.6 92782 1ju2A 536 18.37 c.3.1.2,d.16.1.1 77169,77170 2fnaA 357 18.65 a.4.5.11,c.37.1.20 133809,133810 1g8pA 350 19.02 c.37.1.20 60376 2pjzA 263 19.34 1wf3A 301 19.70 c.37.1.8,d.52.3.1 114574,114575 1a7j 290 20.20 1sxjC 340 22.24 a.80.1.1,c.37.1.20 106085,106086 1w4rA 195 22.77 1fnnA 389 23.08 a.4.5.11,c.37.1.20 16129,32426 1w7jA 795 23.29 b.34.3.1,c.37.1.9 120688,120689 2qgzA 308 23.86 2dkhA 639 24.87 1ye8A 178 25.10 c.37.1.11 123010 1d3vA 323 25.53 c.42.1.1 32559 1cp2A 269 25.72 c.37.1.10 32269 1pbyB 337 25.82 b.69.2.2 94422 2q8pA 260 27.81 1xd8A 289 28.18 1zj6A 187 29.15 c.37.1.8 125145 1njgA 250 29.40 c.37.1.20 85785 2oap1 511 29.57 2bbsA 290 29.69 1z08A 170 30.72 c.37.1.8 124303 1f6bA 198 33.32 c.37.1.8 64986 1ky3A 182 33.36 c.37.1.8 73193 1ls1A 295 33.43 a.24.13.1,c.37.1.10 78170,78171 1w9iA 770 34.10 1n2zA 245 34.23 c.92.2.2 79865 2cvhA 220 35.07 1z47A 355 36.58 1rj9A 304 36.69 a.24.13.1,c.37.1.10 97553,97554 1yqtA 538 37.05 2v26A 784 37.30 1svmA 377 37.89 c.37.1.20 112126 3c5cA 187 38.05 2dpxA 174 38.87 2cvzA 289 40.48 a.100.1.1,c.2.1.6 130890,130891 2rebA 352 42.86 c.37.1.11,d.48.1.1 32282,38767 2gjsA 176 43.22 c.37.1.8 135287 1xp8A 366 43.56 c.37.1.11,d.48.1.1 115735,115736 2ga8A 359 43.83 1n4aA 252 44.14 c.92.2.2 85317 2bm8A 236 46.51 c.66.1.50 128771 2akaB 299 46.89 c.37.1.8 126914 1bif 469 47.44 3bosA 242 47.88 3beoA 375 48.02 2hxsA 178 49.46 2r7aA 256 50.26 3bwdD 182 51.60 2qu8A 228 52.11 1a5t 334 53.44 2chgA 226 54.03 2c9oA 456 54.33 2f9fA 177 55.54 c.87.1.8 133161 1oxxK 353 55.83 b.40.6.3,c.37.1.12 93715,93716 3b9pA 297 56.39 2r2aA 199 56.78 1oheA 348 57.12 c.45.1.1,c.45.1.1 87013,87014 1a5tA 334 57.49 a.80.1.1,c.37.1.20 18450,32423 1u94A 356 57.57 c.37.1.11,d.48.1.1 107743,107744 2g6bA 180 60.73 c.37.1.8 134701 3bs4A 260 61.06 1hl2A 297 61.22 c.1.10.1 83581 1u0jA 267 61.37 c.37.1.20 107546 1tq4A 413 62.99 c.37.1.8 107201 1vdzA 588 64.02 2q3fA 181 64.31 2r44A 331 64.38 2zejA 184 65.45 2og9A 393 65.83 2q3hA 201 66.82 2b8wA 328 68.10 1p3dA 475 69.20 c.5.1.1,c.59.1.1,c.72.2.1 87728,87729,87730 2yv5A 302 69.64 1dekA 241 70.58 c.37.1.1 31842 1mkyA 439 71.18 c.37.1.8,c.37.1.8,d.52.5.1 79250,79251,79252 1puiA 210 72.28 c.37.1.8 88292 2afhE 289 72.73 c.37.1.10 126683 2c8vA 288 72.77 c.37.1.10 130128 3cetA 334 73.69 1ko7A 314 73.98 c.98.2.1,c.91.1.2 72797,72798 1zp4A 304 74.10 1nlfA 279 74.31 c.37.1.11 85850 2bekA 257 74.94 3bblA 287 77.78 1u3wA 374 78.54 b.35.1.2,c.2.1.1 113013,113014 1j8mF 297 80.07 a.24.13.1,c.37.1.10 62742,62743 1yzqA 170 81.14 c.37.1.8 124286 1rydA 387 82.15 c.2.1.3,d.81.1.5 118801,118802 2p5sA 199 86.74 1im8A 244 88.27 c.66.1.14 66212 2jrnA 163 89.10