# List of top-scoring protein chains for t06-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1gky 187 1.49e-09 1ex7A 186 3.94e-09 c.37.1.1 59537 1kjwA 295 4.86e-09 b.34.2.1,c.37.1.1 68643,68644 2qorA 204 5.22e-09 2j41A 207 1.12e-08 1znwA 207 1.41e-08 c.37.1.1 125412 1kgdA 180 1.82e-08 c.37.1.1 68582 2pbrA 195 8.52e-07 2an9A 207 1.95e-06 c.37.1.1 127037 1s96A 219 1.99e-06 c.37.1.1 98740 1t0hB 224 4.98e-06 c.37.1.1 106208 4tmkA 213 6.27e-06 c.37.1.1 31930 1gtvA 214 2.61e-05 c.37.1.1 70537 1p5zB 263 2.94e-05 c.37.1.1 87815 2ccjA 205 6.57e-05 1p6xA 334 7.39e-05 c.37.1.1 94195 1qf9A 194 9.72e-05 c.37.1.1 31848 1ki9A 192 0.000104 c.37.1.1 84404 1ukzA 203 0.000106 c.37.1.1 31840 2c95A 196 0.000149 2z0hA 197 0.000157 1e2kA 331 0.000175 c.37.1.1 31854 2qt1A 207 0.000207 2vp4A 230 0.000209 2bwjA 199 0.000231 1of1A 376 0.000266 c.37.1.1 103924 1ukz 203 0.000307 1khtA 192 0.000359 c.37.1.1 84401 2cdnA 201 0.000442 c.37.1.1 130289 3be4A 217 0.001040 1e4yA 214 0.001111 c.37.1.1,g.41.2.1 31901,45181 1y63A 184 0.001350 c.37.1.1 116494 1zm7A 230 0.001369 2f6rA 281 0.001447 1vhtA 218 0.001604 c.37.1.1 100700 1akyA 220 0.001935 c.37.1.1,g.41.2.1 31896,45197 2plrA 213 0.001944 1zin 217 0.002228 2rgxA 206 0.002476 2rhmA 193 0.002647 1ak2A 233 0.002761 c.37.1.1,g.41.2.1 31894,45195 2ak3A 226 0.003007 c.37.1.1,g.41.2.1 31892,45193 1qhxA 178 0.003304 c.37.1.3 31936 1knqA 175 0.004192 c.37.1.17 72786 2eu8A 216 0.004410 2axpA 173 0.004842 c.37.1.1 127497 2yvuA 186 0.007484 2bdtA 189 0.007559 c.37.1.25 128344 1zd8A 227 0.007785 1nn5A 215 0.007977 c.37.1.1 85892 1uj2A 252 0.008441 c.37.1.6 99452 2pezA 179 0.008549 1kdoA 227 0.009718 c.37.1.1 68478 1zinA 217 0.01010 c.37.1.1,g.41.2.1 31915,45178 1ckeA 227 0.01170 c.37.1.1 31846 1rkbA 173 0.01951 c.37.1.1 111854 1rz3A 201 0.02202 c.37.1.6 98132 1e6cA 173 0.02268 c.37.1.2 59296 1xrjA 261 0.02338 c.37.1.6 122256 2pt5A 168 0.03454 3c8uA 208 0.03667 1ltqA 301 0.03810 c.108.1.9,c.37.1.1 78208,78209 2iyvA 184 0.04687 c.37.1.2 137812 1jjvA 206 0.05197 c.37.1.1 71698 1m7gA 211 0.05831 c.37.1.4 78724 3tmkA 216 0.06455 c.37.1.1 31920 1viaA 175 0.07246 c.37.1.2 100754 2grjA 192 0.07311 1a7jA 290 0.09480 c.37.1.6 31952 2qgnA 322 0.09941 1gvnB 287 0.1153 c.37.1.21 76354 2g1kA 176 0.1183 c.37.1.2 134519 2p67A 341 0.1229 1ly1A 181 0.1487 c.37.1.1 74334 2ax4A 198 0.1584 2p5tB 253 0.1723 1xjcA 169 0.2248 c.37.1.10 115387 1zuhA 168 0.2253 3crrA 323 0.3135 2f1rA 171 0.4024 1l2tA 235 0.5847 c.37.1.12 73514 1np6A 174 0.6656 c.37.1.10 85954 1sq5A 308 0.7819 c.37.1.6 105882 2d2eA 250 0.7824 1g6hA 257 0.8122 c.37.1.12 60318 2gzaA 361 0.9416 1a7j 290 1.021 1kagA 173 1.073 c.37.1.2 72249 2cbzA 237 1.073 1in6A 334 1.081 a.4.5.11,c.37.1.20 62601,62602 1lv7A 257 1.165 c.37.1.20 78232 2pzeA 229 1.289 1in4A 334 1.329 a.4.5.11,c.37.1.20 62597,62598 2nq2C 253 1.346 2ze7A 253 1.373 2bbsA 290 1.383 1w5tA 412 1.494 a.4.5.11,c.37.1.20 114255,114256 2pcjA 224 1.572 2ihyA 279 1.669 2oap1 511 1.716 1g6oA 330 1.727 c.37.1.11 32430 1vplA 256 1.763 c.37.1.12 113966 2hf9A 226 1.816 1ji0A 240 1.847 c.37.1.12 71665 2ff7A 247 1.871 c.37.1.12 133377 3b9qA 302 1.874 1xewX 182 1.931 c.37.1.12 115235 2pmkA 243 2.072 2orwA 184 2.189 1xx6A 191 2.253 c.37.1.24,g.39.1.14 116139,116140 2bjvA 265 2.285 2eyuA 261 2.427 2ixeA 271 2.460 1rj9A 304 2.496 a.24.13.1,c.37.1.10 97553,97554 1tq4A 413 2.558 c.37.1.8 107201 2qy9A 309 2.563 1b0uA 262 2.626 c.37.1.12 32370 2pt7A 330 2.864 1sgwA 214 2.908 c.37.1.12 105541 1z47A 355 2.943 1g291 372 3.016 1htwA 158 3.038 c.37.1.18 71083 2qi9C 249 3.047 2vhjA 331 3.239 1zu4A 320 3.319 1odfA 290 3.550 c.37.1.6 92782 2a5yB 549 3.626 2it1A 362 3.755 1fnnA 389 3.951 a.4.5.11,c.37.1.20 16129,32426 1tueA 212 4.213 c.37.1.20 107323 1bifA 469 4.358 c.37.1.7,c.60.1.4 31961,34003 1oxxK 353 4.560 b.40.6.3,c.37.1.12 93715,93716 1w44A 331 4.832 c.37.1.11 114147 1sxjA 511 4.933 a.80.1.1,c.37.1.20 106081,106082 1pujA 282 5.366 c.37.1.8 88294 1nijA 318 5.377 c.37.1.10,d.237.1.1 85741,85742 2qgzA 308 5.439 1sxjE 354 5.792 a.80.1.1,c.37.1.20 106089,106090 1e9rA 437 6.083 c.37.1.11 64827 1yqtA 538 6.333 1d2nA 272 6.457 c.37.1.20 32428 2og2A 359 6.489 1x6vA 630 6.801 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 2qm8A 337 7.448 1gl6A 436 8.223 c.37.1.11 70259 1z08A 170 8.618 c.37.1.8 124303 2pjzA 263 8.695 1g8pA 350 8.988 c.37.1.20 60376 2fnaA 357 10.30 a.4.5.11,c.37.1.20 133809,133810 1ky3A 182 10.50 c.37.1.8 73193 1ko7A 314 10.62 c.98.2.1,c.91.1.2 72797,72798 1bif 469 10.96 2akaB 299 11.89 c.37.1.8 126914 2ga8A 359 12.00 1dekA 241 12.82 c.37.1.1 31842 1ye8A 178 13.44 c.37.1.11 123010 1w9iA 770 14.27 1knxA 312 14.40 c.98.2.1,c.91.1.2 77459,77460 1n4aA 252 14.94 c.92.2.2 85317 2bm8A 236 15.17 c.66.1.50 128771 1sxjC 340 15.50 a.80.1.1,c.37.1.20 106085,106086 2o5vA 359 15.60 1a5tA 334 15.63 a.80.1.1,c.37.1.20 18450,32423 2v26A 784 15.63 1njgA 250 15.65 c.37.1.20 85785 1zj6A 187 16.12 c.37.1.8 125145 1ls1A 295 16.39 a.24.13.1,c.37.1.10 78170,78171 1n2zA 245 17.32 c.92.2.2 79865 2r44A 331 18.28 2b8wA 328 18.30 2q3hA 201 18.49 1f2tA 149 19.08 c.37.1.12 32373 2bkhA 814 19.68 1h65A 270 20.05 c.37.1.8 65640 2ozeA 298 20.68 3c5cA 187 20.70 1wf3A 301 21.04 c.37.1.8,d.52.3.1 114574,114575 1a5t 334 21.71 2r2aA 199 23.63 3b9pA 297 23.68 2zejA 184 25.95 1svmA 377 26.39 c.37.1.20 112126 1w7jA 795 26.86 b.34.3.1,c.37.1.9 120688,120689 1mh1A 186 27.57 c.37.1.8 32002 2nwhA 317 27.62 1w4rA 195 27.88 3bwdD 182 28.65 2q8pA 260 28.97 2chgA 226 29.25 2c9oA 456 30.84 2jrnA 163 31.07 2k3aA 155 31.43 1u94A 356 31.68 c.37.1.11,d.48.1.1 107743,107744 2j69A 695 32.46 1ihuA 589 33.03 c.37.1.10,c.37.1.10 62394,62395 2g6bA 180 37.22 c.37.1.8 134701 2iutA 574 37.25 1f6bA 198 37.34 c.37.1.8 64986 1xd8A 289 37.69 2qjwA 176 38.54 1j8mF 297 39.40 a.24.13.1,c.37.1.10 62742,62743 1nlfA 279 40.62 c.37.1.11 85850 2gcoA 201 41.03 2r7aA 256 41.12 2c8vA 288 41.16 c.37.1.10 130128 2rexB 197 41.31 3bosA 242 41.94 2yv5A 302 44.42 1b6g 310 50.01 1tca 317 51.07 2bekA 257 51.36 1v4vA 376 51.41 c.87.1.3 100313 2dkhA 639 51.77 1mucA 373 54.08 c.1.11.2,d.54.1.1 29236,38880 2pc8A 400 55.21 1m7bA 184 55.43 c.37.1.8 74572 3bs4A 260 55.50 2zadA 345 56.03 1ufoA 238 56.55 c.69.1.27 99344 3cvoA 202 57.01 1z06A 189 57.65 c.37.1.8 124301 3c4vA 426 59.68 1jbkA 195 61.95 c.37.1.20 71631 2dpxA 174 63.55 2efjA 384 64.15 1jalA 363 64.17 c.37.1.8,d.15.10.2 84138,84139 1u0jA 267 65.78 c.37.1.20 107546 2f9fA 177 65.99 c.87.1.8 133161 2hxsA 178 66.67 1yzqA 170 67.06 c.37.1.8 124286 2afhE 289 67.16 c.37.1.10 126683 2gzsA 278 69.43 1wcv1 257 70.25 2b7aA 293 70.94 1efdN 266 71.34 c.92.2.1 35597 1im8A 244 77.84 c.66.1.14 66212 2p65A 187 78.59 1g3qA 237 78.96 c.37.1.10 60237 2j8mA 172 79.56 1cp2A 269 79.99 c.37.1.10 32269 1g38A 393 82.09 c.66.1.27,d.287.1.1 111567,111568 2qmoA 220 82.95 2h17A 181 83.27 2gjsA 176 83.45 c.37.1.8 135287 2q3fA 181 85.48 1g41A 444 86.98 c.37.1.20 32450 2fz4A 237 87.83 c.37.1.19 134419 2dpyA 438 88.25