# List of top-scoring protein chains for t06-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2qorA 204 4.90e-08 1gky 187 7.44e-08 1ex7A 186 1.05e-07 c.37.1.1 59537 1kjwA 295 1.54e-07 b.34.2.1,c.37.1.1 68643,68644 1znwA 207 2.50e-07 c.37.1.1 125412 1kgdA 180 3.60e-07 c.37.1.1 68582 2j41A 207 4.80e-07 2an9A 207 1.32e-05 c.37.1.1 127037 1s96A 219 1.99e-05 c.37.1.1 98740 2pbrA 195 2.55e-05 1t0hB 224 8.79e-05 c.37.1.1 106208 1qf9A 194 0.000464 c.37.1.1 31848 1gtvA 214 0.000669 c.37.1.1 70537 2ccjA 205 0.001030 1ki9A 192 0.001133 c.37.1.1 84404 1p6xA 334 0.001213 c.37.1.1 94195 1ukzA 203 0.001217 c.37.1.1 31840 4tmkA 213 0.001331 c.37.1.1 31930 1p5zB 263 0.001811 c.37.1.1 87815 1ukz 203 0.001944 2z0hA 197 0.002301 2qt1A 207 0.002706 2vp4A 230 0.002864 2c95A 196 0.002960 2f6rA 281 0.003436 1khtA 192 0.003832 c.37.1.1 84401 3be4A 217 0.004435 1of1A 376 0.004573 c.37.1.1 103924 2bwjA 199 0.004870 1e2kA 331 0.005663 c.37.1.1 31854 1zm7A 230 0.006188 2cdnA 201 0.009523 c.37.1.1 130289 2yvuA 186 0.01025 2axpA 173 0.01096 c.37.1.1 127497 1akyA 220 0.01144 c.37.1.1,g.41.2.1 31896,45197 1vhtA 218 0.01349 c.37.1.1 100700 2pezA 179 0.01474 1nn5A 215 0.01518 c.37.1.1 85892 1y63A 184 0.01638 c.37.1.1 116494 2plrA 213 0.01747 1m7gA 211 0.02620 c.37.1.4 78724 1zin 217 0.02758 2rhmA 193 0.02810 1kdoA 227 0.02923 c.37.1.1 68478 2rgxA 206 0.02931 2pt5A 168 0.03223 1e4yA 214 0.03423 c.37.1.1,g.41.2.1 31901,45181 2iyvA 184 0.03599 c.37.1.2 137812 2eu8A 216 0.03948 1ak2A 233 0.03987 c.37.1.1,g.41.2.1 31894,45195 1knqA 175 0.04168 c.37.1.17 72786 1qhxA 178 0.04755 c.37.1.3 31936 1e6cA 173 0.04986 c.37.1.2 59296 1rz3A 201 0.05276 c.37.1.6 98132 2bdtA 189 0.05863 c.37.1.25 128344 1zinA 217 0.06168 c.37.1.1,g.41.2.1 31915,45178 1xrjA 261 0.06307 c.37.1.6 122256 1rkbA 173 0.06561 c.37.1.1 111854 2g1kA 176 0.06612 c.37.1.2 134519 1uj2A 252 0.06810 c.37.1.6 99452 3c8uA 208 0.07114 3tmkA 216 0.07161 c.37.1.1 31920 2ak3A 226 0.07540 c.37.1.1,g.41.2.1 31892,45193 2ax4A 198 0.1018 1viaA 175 0.1376 c.37.1.2 100754 1jjvA 206 0.1464 c.37.1.1 71698 1zuhA 168 0.1778 1ckeA 227 0.1783 c.37.1.1 31846 3crrA 323 0.1803 1zd8A 227 0.2509 1gvnB 287 0.3240 c.37.1.21 76354 2grjA 192 0.3345 1a7jA 290 0.4501 c.37.1.6 31952 2p5tB 253 0.7011 2p67A 341 0.7058 2qgnA 322 0.9466 1sq5A 308 0.9833 c.37.1.6 105882 1ly1A 181 1.067 c.37.1.1 74334 1kagA 173 1.422 c.37.1.2 72249 1ltqA 301 1.683 c.108.1.9,c.37.1.1 78208,78209 2f1rA 171 1.820 1a7j 290 1.984 1lv7A 257 2.133 c.37.1.20 78232 1in6A 334 3.635 a.4.5.11,c.37.1.20 62601,62602 1bifA 469 3.830 c.37.1.7,c.60.1.4 31961,34003 3b9qA 302 4.611 2b8wA 328 4.872 1xx6A 191 5.060 c.37.1.24,g.39.1.14 116139,116140 1rj9A 304 5.205 a.24.13.1,c.37.1.10 97553,97554 2orwA 184 5.409 2qy9A 309 5.972 1in4A 334 6.205 a.4.5.11,c.37.1.20 62597,62598 2bbsA 290 6.463 2gzaA 361 6.504 2eyuA 261 6.587 1tq4A 413 6.896 c.37.1.8 107201 1odfA 290 7.227 c.37.1.6 92782 1np6A 174 7.881 c.37.1.10 85954 2cbzA 237 7.952 1zu4A 320 8.244 1w44A 331 8.918 c.37.1.11 114147 1g6hA 257 9.526 c.37.1.12 60318 2d2eA 250 10.46 2pzeA 229 10.70 2bjvA 265 11.15 1x6vA 630 11.52 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 1vplA 256 11.71 c.37.1.12 113966 2ff7A 247 12.79 c.37.1.12 133377 1nijA 318 12.91 c.37.1.10,d.237.1.1 85741,85742 2vhjA 331 12.93 1g6oA 330 12.93 c.37.1.11 32430 1ji0A 240 13.36 c.37.1.12 71665 2ze7A 253 13.68 2pmkA 243 13.93 2akaB 299 14.24 c.37.1.8 126914 1bif 469 16.60 2pt7A 330 16.68 1l2tA 235 17.25 c.37.1.12 73514 2ixeA 271 17.46 2pcjA 224 17.48 1ls1A 295 17.55 a.24.13.1,c.37.1.10 78170,78171 1l1eA 287 17.89 c.66.1.18 73454 2a5yB 549 17.99 1dekA 241 18.05 c.37.1.1 31842 1tueA 212 18.87 c.37.1.20 107323 1d2nA 272 18.91 c.37.1.20 32428 1sgwA 214 19.84 c.37.1.12 105541 2o2gA 223 20.18 2pjzA 263 20.27 2qgzA 308 22.22 1b0uA 262 23.11 c.37.1.12 32370 2oap1 511 23.13 2qm8A 337 23.41 1z47A 355 23.45 3b9pA 297 23.63 1w4rA 195 25.35 1yqtA 538 25.60 1e9rA 437 29.12 c.37.1.11 64827 2qjwA 176 31.79 2nq2C 253 31.99 2hf9A 226 32.14 2ihyA 279 32.68 2fnaA 357 35.49 a.4.5.11,c.37.1.20 133809,133810 1xjcA 169 37.66 c.37.1.10 115387 2og2A 359 38.88 1fnnA 389 39.92 a.4.5.11,c.37.1.20 16129,32426 1tca 317 40.70 1gl6A 436 40.98 c.37.1.11 70259 1oxxK 353 43.86 b.40.6.3,c.37.1.12 93715,93716 2jbwA 386 46.16 1sxjE 354 47.48 a.80.1.1,c.37.1.20 106089,106090 2a0mA 316 48.83 c.42.1.1 125960 2qi9C 249 49.67 1g291 372 51.17 1jmkC 230 53.16 c.69.1.22 71747 1sxjA 511 53.59 a.80.1.1,c.37.1.20 106081,106082 2rexB 197 54.29 1a5tA 334 54.32 a.80.1.1,c.37.1.20 18450,32423 2it1A 362 55.52 1ye8A 178 55.66 c.37.1.11 123010 1w9iA 770 55.74 1wohA 305 56.21 c.42.1.1 109446 1vmaA 306 59.67 a.24.13.1,c.37.1.10 108887,108888 2bm8A 236 60.32 c.66.1.50 128771 2ip2A 334 61.37 2c9oA 456 62.51 1pujA 282 63.39 c.37.1.8 88294 2ga8A 359 64.37 2hjgA 436 67.23 2cb9A 244 67.97 2gzsA 278 69.57 2q3hA 201 72.37 2v26A 784 74.29 2bkhA 814 74.38 3c5cA 187 75.05 1j8mF 297 77.11 a.24.13.1,c.37.1.10 62742,62743 1rrmA 386 77.66 e.22.1.2 105081 1zoiA 276 83.06 3cz8A 319 84.09 1wf3A 301 86.64 c.37.1.8,d.52.3.1 114574,114575 1o5zA 442 87.20 c.59.1.2,c.72.2.2 92530,92531 1edtA 271 89.41 c.1.8.5 28993