# List of top-scoring protein chains for t04-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2pbrA 195 2.55e-08 2ccjA 205 1.41e-07 4tmkA 213 1.69e-07 c.37.1.1 31930 1p5zB 263 1.99e-07 c.37.1.1 87815 2plrA 213 4.01e-07 2qorA 204 8.62e-07 1z6gA 218 1.03e-06 1z8fA 228 1.24e-06 2j41A 207 1.55e-06 2z0hA 197 1.83e-06 2vp4A 230 2.21e-06 1gtvA 214 2.84e-06 c.37.1.1 70537 1znwA 207 3.45e-06 c.37.1.1 125412 2bwjA 199 6.67e-06 1p6xA 334 9.55e-06 c.37.1.1 94195 1ex7A 186 1.59e-05 c.37.1.1 59537 1of1A 376 2.04e-05 c.37.1.1 103924 1qhiA 366 2.25e-05 c.37.1.1 31860 1zm7A 230 3.29e-05 2c95A 196 3.35e-05 1e2kA 331 3.71e-05 c.37.1.1 31854 1oe0A 230 4.40e-05 c.37.1.1 92788 2cdnA 201 4.81e-05 c.37.1.1 130289 1ukzA 203 4.96e-05 c.37.1.1 31840 1s4qA 228 5.36e-05 c.37.1.1 98507 1ki9A 192 9.11e-05 c.37.1.1 84404 1kjwA 295 9.43e-05 b.34.2.1,c.37.1.1 68643,68644 1ukz 203 0.000246 2axpA 173 0.000276 c.37.1.1 127497 1y63A 184 0.000280 c.37.1.1 116494 1qf9A 194 0.000411 c.37.1.1 31848 1vhtA 218 0.000432 c.37.1.1 100700 1t0hB 224 0.000441 c.37.1.1 106208 1qhxA 178 0.000531 c.37.1.3 31936 1t3lA 337 0.000813 b.34.2.1,c.37.1.1 106358,106359 1knqA 175 0.000910 c.37.1.17 72786 1kdoA 227 0.000949 c.37.1.1 68478 1ckeA 227 0.000971 c.37.1.1 31846 1uj2A 252 0.001072 c.37.1.6 99452 1e4yA 214 0.001492 c.37.1.1,g.41.2.1 31901,45181 3tmkA 216 0.001539 c.37.1.1 31920 1nksA 194 0.001641 c.37.1.1 31886 1e6cA 173 0.001820 c.37.1.2 59296 2f6rA 281 0.002373 2qgnA 322 0.002845 1khtA 192 0.003561 c.37.1.1 84401 1xrjA 261 0.003564 c.37.1.6 122256 2ak3A 226 0.004234 c.37.1.1,g.41.2.1 31892,45193 2ax4A 198 0.005314 1gky 187 0.007054 1zd8A 227 0.007201 2qt1A 207 0.009025 3c8uA 208 0.01138 1jjvA 206 0.01182 c.37.1.1 71698 1p3jA 217 0.01270 c.37.1.1,g.41.2.1 94022,94023 2rgxA 206 0.01388 1ak2A 233 0.01501 c.37.1.1,g.41.2.1 31894,45195 2g1kA 176 0.01664 c.37.1.2 134519 1n3bA 216 0.01888 c.37.1.1 79959 1zin 217 0.01908 1nn5A 215 0.02048 c.37.1.1 85892 2eu8A 216 0.02078 2bdtA 189 0.03114 c.37.1.25 128344 2ze7A 253 0.03427 1akyA 220 0.04206 c.37.1.1,g.41.2.1 31896,45197 1ltqA 301 0.04859 c.108.1.9,c.37.1.1 78208,78209 2an9A 207 0.06174 c.37.1.1 127037 1zinA 217 0.06384 c.37.1.1,g.41.2.1 31915,45178 1viaA 175 0.06428 c.37.1.2 100754 2iyvA 184 0.06529 c.37.1.2 137812 3crrA 323 0.06753 1kgdA 180 0.08295 c.37.1.1 68582 1zuhA 168 0.08999 3be4A 217 0.09288 2ga8A 359 0.1253 1rkbA 173 0.1275 c.37.1.1 111854 1ly1A 181 0.1428 c.37.1.1 74334 2pezA 179 0.1636 1sq5A 308 0.1835 c.37.1.6 105882 1m7gA 211 0.1912 c.37.1.4 78724 1kagA 173 0.2169 c.37.1.2 72249 1s96A 219 0.2243 c.37.1.1 98740 2yvuA 186 0.3379 2rhmA 193 0.4148 1xjcA 169 0.5021 c.37.1.10 115387 2pt5A 168 0.6603 1dekA 241 0.6956 c.37.1.1 31842 1esmA 316 0.7035 c.37.1.6 31953 2f1rA 171 0.7576 1a7jA 290 0.7628 c.37.1.6 31952 2grjA 192 0.8307 1tq4A 413 0.8499 c.37.1.8 107201 1np6A 174 0.9376 c.37.1.10 85954 2p67A 341 0.9576 1nijA 318 1.030 c.37.1.10,d.237.1.1 85741,85742 2p5tB 253 1.142 2orwA 184 1.321 1a7j 290 1.550 1ihuA 589 1.670 c.37.1.10,c.37.1.10 62394,62395 1tq6A 413 2.206 c.37.1.8 107202 1xwiA 322 2.348 2oap1 511 2.544 1x6vA 630 2.577 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 2pt7A 330 2.889 1rz3A 201 2.919 c.37.1.6 98132 1gvnB 287 2.952 c.37.1.21 76354 1a5t 334 2.990 1njgA 250 3.558 c.37.1.20 85785 2eyuA 261 3.980 2d2eA 250 4.023 1xx6A 191 4.103 c.37.1.24,g.39.1.14 116139,116140 2vhjA 331 4.104 2qm8A 337 4.186 2hf9A 226 4.360 3b9qA 302 4.438 1sxjC 340 4.814 a.80.1.1,c.37.1.20 106085,106086 1zu4A 320 4.852 1w44A 331 4.995 c.37.1.11 114147 2og2A 359 5.018 2fh5B 214 5.022 c.37.1.8 133478 2r44A 331 5.858 1g6hA 257 6.482 c.37.1.12 60318 1htwA 158 6.695 c.37.1.18 71083 1in4A 334 6.947 a.4.5.11,c.37.1.20 62597,62598 1wcv1 257 6.957 1ji0A 240 6.958 c.37.1.12 71665 1g8yA 279 7.250 c.37.1.11 32302 1yrbA 262 7.305 c.37.1.10 123915 1e9rA 437 7.372 c.37.1.11 64827 1a5tA 334 7.662 a.80.1.1,c.37.1.20 18450,32423 1vplA 256 7.874 c.37.1.12 113966 1l2tA 235 9.582 c.37.1.12 73514 1sxjA 511 10.18 a.80.1.1,c.37.1.20 106081,106082 3b9pA 297 10.26 2gzaA 361 10.63 2r2aA 199 10.67 3bosA 242 10.72 2qy9A 309 10.79 1sxjE 354 10.81 a.80.1.1,c.37.1.20 106089,106090 1j8mF 297 11.48 a.24.13.1,c.37.1.10 62742,62743 1b0uA 262 11.63 c.37.1.12 32370 1xbtA 193 12.35 c.37.1.24,g.39.1.14 115080,115081 1w5tA 412 12.64 a.4.5.11,c.37.1.20 114255,114256 1z47A 355 12.90 1ye8A 178 12.96 c.37.1.11 123010 2cbzA 237 12.99 2c8vA 288 13.93 c.37.1.10 130128 2pzeA 229 14.60 1g3qA 237 15.08 c.37.1.10 60237 2ff7A 247 15.26 c.37.1.12 133377 1cp2A 269 15.77 c.37.1.10 32269 2ihyA 279 16.41 2k3aA 155 16.65 1vcoA 550 17.00 c.23.16.1,c.37.1.10 108508,108509 1nsf 273 17.58 2pmkA 243 17.64 1xewX 182 18.56 c.37.1.12 115235 1sgwA 214 19.02 c.37.1.12 105541 1g6oA 330 19.26 c.37.1.11 32430 2bbsA 290 19.97 2px0A 296 20.61 1xd8A 289 20.67 1ls1A 295 20.83 a.24.13.1,c.37.1.10 78170,78171 2dkaA 544 21.74 2bekA 257 21.81 2it1A 362 22.31 1pujA 282 22.65 c.37.1.8 88294 1svmA 377 22.70 c.37.1.20 112126 1mvwA 840 23.96 i.15.1.1 79523 1nlfA 279 24.04 c.37.1.11 85850 2pcjA 224 24.09 2b8wA 328 24.11 1tueA 212 24.16 c.37.1.20 107323 2qi9C 249 24.37 1lv7A 257 24.99 c.37.1.20 78232 1jx2B 315 25.10 c.37.1.8 67404 2afhE 289 25.16 c.37.1.10 126683 2ixeA 271 25.58 2c9oA 456 25.81 1w9iA 770 26.00 1d6jA 211 26.19 c.37.1.4 31940 1n25A 368 27.13 c.37.1.20 85264 1r0wA 286 27.64 c.37.1.12 96754 2akaA 776 28.43 1wywA 230 29.04 3bs4A 260 29.43 1vmaA 306 29.77 a.24.13.1,c.37.1.10 108887,108888 2qmoA 220 29.85 1xmiA 291 31.11 c.37.1.12 115489 1yqtA 538 31.81 1bifA 469 31.99 c.37.1.7,c.60.1.4 31961,34003 1rj9A 304 32.91 a.24.13.1,c.37.1.10 97553,97554 2a5yB 549 33.00 2qgzA 308 33.95 2gxaA 274 36.27 2jrnA 163 36.50 2yv5A 302 37.89 2z83A 459 39.13 2fnaA 357 39.19 a.4.5.11,c.37.1.20 133809,133810 2g1uA 155 39.73 1lvk 762 39.92 1lnzA 342 40.51 b.117.1.1,c.37.1.8 78112,78113 1d0yA 761 41.00 b.34.3.1,c.37.1.9 24581,32178 1us8A 147 41.77 c.37.1.12 99859 2ozeA 298 42.37 1g8fA 511 42.71 b.122.1.3,c.26.1.5,c.37.1.15 60348,60349,60350 1knxA 312 43.26 c.98.2.1,c.91.1.2 77459,77460 2chgA 226 44.81 1i52A 236 46.46 c.68.1.13 61767 1f2tA 149 47.81 c.37.1.12 32373 1t2aA 375 50.19 c.2.1.2 99078 1byi 224 50.65 1h65A 270 51.76 c.37.1.8 65640 2cxxA 190 52.93 c.37.1.8 131013 2bkhA 814 53.28 2v26A 784 53.64 1ko7A 314 53.83 c.98.2.1,c.91.1.2 72797,72798 1oxsC 353 54.56 b.40.6.3,c.37.1.12 87519,87520 2dr3A 247 55.40 1d2nA 272 56.95 c.37.1.20 32428 2ffqA 171 57.14 1egaA 301 57.15 c.37.1.8,d.52.3.1 32150,38836 1n2zA 245 57.29 c.92.2.2 79865 1lw7A 365 60.78 c.26.1.3,c.37.1.1 74295,74296 2p65A 187 60.88 1b5tA 275 62.46 c.1.23.1 29676 1u0jA 267 64.78 c.37.1.20 107546 1in6A 334 69.51 a.4.5.11,c.37.1.20 62601,62602 1efdN 266 69.99 c.92.2.1 35597 2dykA 161 70.54 1ewqA 765 71.15 a.113.1.1,c.37.1.12,c.55.6.1,d.75.2.1 19069,32383,33740,39743 2pjzA 263 74.74 1eg7A 557 74.83 c.37.1.10 32241 1o5zA 442 75.60 c.59.1.2,c.72.2.2 92530,92531 1gq6A 313 77.13 c.42.1.1 70341 1jbkA 195 78.30 c.37.1.20 71631 1w7jA 795 78.74 b.34.3.1,c.37.1.9 120688,120689 1st9A 143 78.91 c.47.1.10 98987 2ef5A 290 79.16 1yzqA 170 79.57 c.37.1.8 124286 2nq2C 253 80.36 1oxxK 353 80.43 b.40.6.3,c.37.1.12 93715,93716 2gj8A 172 80.82 c.37.1.8 135270 1j8yF 297 82.38 a.24.13.1,c.37.1.10 62747,62748 1n4aA 252 82.41 c.92.2.2 85317 1t9hA 307 82.65 b.40.4.5,c.37.1.8 112358,112359 2h17A 181 84.10 1gg4A 452 84.48 c.59.1.1,c.98.1.1,c.72.2.1 33957,58985,58986 1qhlA 227 87.61 c.37.1.12 32382 2akaB 299 87.70 c.37.1.8 126914 2aebA 322 88.49 c.42.1.1 126617