# List of top-scoring protein chains for t04-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2pbrA 195 1.79e-08 4tmkA 213 7.53e-08 c.37.1.1 31930 2ccjA 205 7.71e-08 1p5zB 263 1.29e-07 c.37.1.1 87815 2plrA 213 2.79e-07 1z8fA 228 8.29e-07 2z0hA 197 1.09e-06 2qorA 204 1.09e-06 1z6gA 218 1.42e-06 1gtvA 214 1.57e-06 c.37.1.1 70537 2vp4A 230 1.74e-06 2j41A 207 2.10e-06 1znwA 207 3.58e-06 c.37.1.1 125412 2bwjA 199 4.91e-06 1p6xA 334 5.08e-06 c.37.1.1 94195 1ex7A 186 9.19e-06 c.37.1.1 59537 1of1A 376 1.24e-05 c.37.1.1 103924 1qhiA 366 1.53e-05 c.37.1.1 31860 1e2kA 331 1.80e-05 c.37.1.1 31854 1zm7A 230 1.99e-05 1ukzA 203 2.59e-05 c.37.1.1 31840 2cdnA 201 3.37e-05 c.37.1.1 130289 1s4qA 228 3.89e-05 c.37.1.1 98507 2c95A 196 4.01e-05 1oe0A 230 4.41e-05 c.37.1.1 92788 1ki9A 192 5.21e-05 c.37.1.1 84404 1ukz 203 5.65e-05 1kjwA 295 0.000142 b.34.2.1,c.37.1.1 68643,68644 1qf9A 194 0.000165 c.37.1.1 31848 1kdoA 227 0.000213 c.37.1.1 68478 1t0hB 224 0.000264 c.37.1.1 106208 1y63A 184 0.000269 c.37.1.1 116494 2axpA 173 0.000394 c.37.1.1 127497 1ckeA 227 0.000411 c.37.1.1 31846 1t3lA 337 0.000441 b.34.2.1,c.37.1.1 106358,106359 1knqA 175 0.000525 c.37.1.17 72786 1vhtA 218 0.000554 c.37.1.1 100700 1qhxA 178 0.000604 c.37.1.3 31936 1nksA 194 0.000656 c.37.1.1 31886 3tmkA 216 0.000742 c.37.1.1 31920 1uj2A 252 0.000769 c.37.1.6 99452 1khtA 192 0.001207 c.37.1.1 84401 1e6cA 173 0.001460 c.37.1.2 59296 1e4yA 214 0.001554 c.37.1.1,g.41.2.1 31901,45181 2f6rA 281 0.002100 2qgnA 322 0.003027 2ax4A 198 0.003828 1zd8A 227 0.003940 1xrjA 261 0.005443 c.37.1.6 122256 2ak3A 226 0.006887 c.37.1.1,g.41.2.1 31892,45193 1zin 217 0.007839 2g1kA 176 0.009881 c.37.1.2 134519 1gky 187 0.01014 2qt1A 207 0.01272 1n3bA 216 0.01288 c.37.1.1 79959 3c8uA 208 0.01294 1jjvA 206 0.01316 c.37.1.1 71698 1p3jA 217 0.01352 c.37.1.1,g.41.2.1 94022,94023 1ak2A 233 0.01460 c.37.1.1,g.41.2.1 31894,45195 2bdtA 189 0.01587 c.37.1.25 128344 2eu8A 216 0.01618 2rgxA 206 0.02166 1ltqA 301 0.02261 c.108.1.9,c.37.1.1 78208,78209 1nn5A 215 0.02474 c.37.1.1 85892 2ze7A 253 0.03006 1ly1A 181 0.03472 c.37.1.1 74334 1akyA 220 0.03774 c.37.1.1,g.41.2.1 31896,45197 1kgdA 180 0.04215 c.37.1.1 68582 3crrA 323 0.04468 2iyvA 184 0.04695 c.37.1.2 137812 1viaA 175 0.04912 c.37.1.2 100754 1zinA 217 0.06360 c.37.1.1,g.41.2.1 31915,45178 1zuhA 168 0.07841 2rhmA 193 0.07952 2an9A 207 0.09064 c.37.1.1 127037 3be4A 217 0.09097 2pezA 179 0.09733 1rkbA 173 0.1255 c.37.1.1 111854 2yvuA 186 0.1880 1s96A 219 0.2024 c.37.1.1 98740 2ga8A 359 0.2451 2grjA 192 0.2706 1m7gA 211 0.3518 c.37.1.4 78724 1sq5A 308 0.3706 c.37.1.6 105882 1kagA 173 0.4229 c.37.1.2 72249 1dekA 241 0.4539 c.37.1.1 31842 1a7jA 290 0.4927 c.37.1.6 31952 1xjcA 169 0.6687 c.37.1.10 115387 1esmA 316 0.7086 c.37.1.6 31953 1a7j 290 0.9401 1nijA 318 0.9415 c.37.1.10,d.237.1.1 85741,85742 2p67A 341 0.9722 2f1rA 171 0.9904 2pt5A 168 1.071 1tq4A 413 1.125 c.37.1.8 107201 1xwiA 322 1.475 1x6vA 630 1.509 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 1np6A 174 1.540 c.37.1.10 85954 2p5tB 253 1.655 2orwA 184 1.773 1in4A 334 2.210 a.4.5.11,c.37.1.20 62597,62598 2eyuA 261 2.511 2hf9A 226 2.716 2pt7A 330 2.754 1ihuA 589 2.840 c.37.1.10,c.37.1.10 62394,62395 1gvnB 287 2.848 c.37.1.21 76354 1a5t 334 2.870 1njgA 250 2.915 c.37.1.20 85785 2oap1 511 2.938 1xx6A 191 2.944 c.37.1.24,g.39.1.14 116139,116140 1tq6A 413 3.212 c.37.1.8 107202 2qm8A 337 3.369 1rz3A 201 3.618 c.37.1.6 98132 2vhjA 331 3.804 2d2eA 250 3.926 1g6hA 257 4.331 c.37.1.12 60318 3b9qA 302 4.632 1ji0A 240 4.671 c.37.1.12 71665 2og2A 359 4.789 1sxjC 340 4.990 a.80.1.1,c.37.1.20 106085,106086 2fh5B 214 5.032 c.37.1.8 133478 1g8yA 279 5.039 c.37.1.11 32302 1vplA 256 5.083 c.37.1.12 113966 2r44A 331 5.183 1zu4A 320 5.462 1w44A 331 5.483 c.37.1.11 114147 1yrbA 262 5.998 c.37.1.10 123915 1htwA 158 6.019 c.37.1.18 71083 1l2tA 235 6.183 c.37.1.12 73514 2r2aA 199 6.396 1e9rA 437 6.603 c.37.1.11 64827 1j8mF 297 7.139 a.24.13.1,c.37.1.10 62742,62743 1a5tA 334 7.260 a.80.1.1,c.37.1.20 18450,32423 2qy9A 309 7.611 3b9pA 297 9.377 2pmkA 243 9.915 1xbtA 193 9.927 c.37.1.24,g.39.1.14 115080,115081 2ff7A 247 10.13 c.37.1.12 133377 1z47A 355 10.32 2cbzA 237 10.45 2ihyA 279 11.22 1ls1A 295 11.35 a.24.13.1,c.37.1.10 78170,78171 1oxsC 353 11.52 b.40.6.3,c.37.1.12 87519,87520 2pzeA 229 11.81 2ixeA 271 11.94 1vmaA 306 11.99 a.24.13.1,c.37.1.10 108887,108888 1nsf 273 12.59 2gzaA 361 12.62 1b0uA 262 12.86 c.37.1.12 32370 1sxjA 511 12.99 a.80.1.1,c.37.1.20 106081,106082 1w5tA 412 13.65 a.4.5.11,c.37.1.20 114255,114256 1sgwA 214 13.79 c.37.1.12 105541 2chgA 226 13.94 1oxxK 353 14.09 b.40.6.3,c.37.1.12 93715,93716 1svmA 377 14.15 c.37.1.20 112126 1wcv1 257 14.39 2bbsA 290 15.06 2px0A 296 15.34 1yqtA 538 16.10 1pujA 282 16.26 c.37.1.8 88294 1ye8A 178 16.53 c.37.1.11 123010 1in6A 334 16.60 a.4.5.11,c.37.1.20 62601,62602 2a5yB 549 17.20 2pcjA 224 17.22 1cp2A 269 17.32 c.37.1.10 32269 1lv7A 257 17.92 c.37.1.20 78232 1rj9A 304 18.23 a.24.13.1,c.37.1.10 97553,97554 1b5tA 275 19.82 c.1.23.1 29676 2c9oA 456 19.86 1w78A 422 19.88 2afhE 289 20.33 c.37.1.10 126683 1xd8A 289 20.58 2yv5A 302 20.94 1nlfA 279 21.25 c.37.1.11 85850 1tueA 212 21.58 c.37.1.20 107323 2c8vA 288 21.66 c.37.1.10 130128 1ko7A 314 21.99 c.98.2.1,c.91.1.2 72797,72798 2qi9C 249 22.20 2k3aA 155 22.34 1d6jA 211 22.35 c.37.1.4 31940 2it1A 362 22.41 1g3qA 237 24.12 c.37.1.10 60237 1jx2B 315 24.16 c.37.1.8 67404 2g1uA 155 25.00 1r0wA 286 25.38 c.37.1.12 96754 3bs4A 260 26.27 1w9iA 770 26.34 1xmiA 291 26.65 c.37.1.12 115489 1g291 372 26.75 2fnaA 357 27.05 a.4.5.11,c.37.1.20 133809,133810 1n25A 368 27.79 c.37.1.20 85264 1g6oA 330 27.80 c.37.1.11 32430 1knxA 312 27.80 c.98.2.1,c.91.1.2 77459,77460 1n2zA 245 28.27 c.92.2.2 79865 2cxxA 190 28.77 c.37.1.8 131013 1bifA 469 28.89 c.37.1.7,c.60.1.4 31961,34003 1j8yF 297 29.79 a.24.13.1,c.37.1.10 62747,62748 2b8wA 328 30.07 1us8A 147 30.12 c.37.1.12 99859 2p65A 187 30.97 2v26A 784 31.07 1i52A 236 32.94 c.68.1.13 61767 1xewX 182 33.89 c.37.1.12 115235 1g8fA 511 34.12 b.122.1.3,c.26.1.5,c.37.1.15 60348,60349,60350 1u0jA 267 34.30 c.37.1.20 107546 2akaA 776 34.65 1qhlA 227 35.83 c.37.1.12 32382 1d2nA 272 35.95 c.37.1.20 32428 2bkhA 814 37.52 1d0yA 761 38.84 b.34.3.1,c.37.1.9 24581,32178 2z83A 459 40.05 1n4aA 252 40.14 c.92.2.2 85317 1mvwA 840 40.54 i.15.1.1 79523 1vcoA 550 40.65 c.23.16.1,c.37.1.10 108508,108509 1sxjE 354 41.11 a.80.1.1,c.37.1.20 106089,106090 2qmoA 220 41.25 1wywA 230 43.42 1f2tA 149 43.44 c.37.1.12 32373 1lvk 762 44.22 1egaA 301 48.50 c.37.1.8,d.52.3.1 32150,38836 1h65A 270 50.44 c.37.1.8 65640 2ozeA 298 50.67 1ewqA 765 51.46 a.113.1.1,c.37.1.12,c.55.6.1,d.75.2.1 19069,32383,33740,39743 1wf3A 301 52.21 c.37.1.8,d.52.3.1 114574,114575 1t9hA 307 52.27 b.40.4.5,c.37.1.8 112358,112359 1w7jA 795 52.38 b.34.3.1,c.37.1.9 120688,120689 2dkaA 544 53.75 2gdjA 264 54.06 c.37.1.11 135018 2dr3A 247 54.22 2r7aA 256 54.95 2bekA 257 55.75 1qopA 268 57.06 c.1.2.4 28570 2jrnA 163 57.84 2qgzA 308 58.02 2cvhA 220 58.47 2pjzA 263 59.15 3bosA 242 59.64 1byi 224 60.52 2vafA 378 61.08 1t2aA 375 62.52 c.2.1.2 99078 2ffqA 171 64.69 2gj8A 172 65.00 c.37.1.8 135270 1jbkA 195 65.28 c.37.1.20 71631 1efdN 266 66.51 c.92.2.1 35597 1lnzA 342 66.68 b.117.1.1,c.37.1.8 78112,78113 1o5zA 442 67.17 c.59.1.2,c.72.2.2 92530,92531 2gxaA 274 70.50 2e87A 357 74.54 2v8oA 444 74.71 3cox 507 75.51 1lw7A 365 76.89 c.26.1.3,c.37.1.1 74295,74296 1e8cA 498 77.32 c.98.1.1,c.59.1.1,c.72.2.1 59377,59378,59379 2h17A 181 78.10 1gq6A 313 79.39 c.42.1.1 70341 2qu8A 228 80.28 2dykA 161 83.60 2nq2C 253 84.67 2q8pA 260 86.81