# List of top-scoring protein chains for t04-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2pbrA 195 2.51e-08 2ccjA 205 9.73e-08 4tmkA 213 1.14e-07 c.37.1.1 31930 1p5zB 263 1.46e-07 c.37.1.1 87815 2plrA 213 3.54e-07 1z8fA 228 1.21e-06 2qorA 204 1.54e-06 2z0hA 197 1.62e-06 1z6gA 218 2.17e-06 2vp4A 230 2.34e-06 1gtvA 214 2.48e-06 c.37.1.1 70537 2j41A 207 2.92e-06 1znwA 207 4.63e-06 c.37.1.1 125412 2bwjA 199 5.55e-06 1p6xA 334 6.72e-06 c.37.1.1 94195 1ex7A 186 1.39e-05 c.37.1.1 59537 1of1A 376 1.73e-05 c.37.1.1 103924 1qhiA 366 2.18e-05 c.37.1.1 31860 1zm7A 230 2.37e-05 1e2kA 331 2.55e-05 c.37.1.1 31854 1ukzA 203 2.82e-05 c.37.1.1 31840 2cdnA 201 4.10e-05 c.37.1.1 130289 2c95A 196 4.43e-05 1oe0A 230 5.08e-05 c.37.1.1 92788 1s4qA 228 5.29e-05 c.37.1.1 98507 1ki9A 192 6.92e-05 c.37.1.1 84404 1ukz 203 7.24e-05 1kjwA 295 0.000168 b.34.2.1,c.37.1.1 68643,68644 1qf9A 194 0.000169 c.37.1.1 31848 1kdoA 227 0.000270 c.37.1.1 68478 1t0hB 224 0.000339 c.37.1.1 106208 1y63A 184 0.000347 c.37.1.1 116494 1qhxA 178 0.000387 c.37.1.3 31936 2axpA 173 0.000469 c.37.1.1 127497 1knqA 175 0.000571 c.37.1.17 72786 1t3lA 337 0.000605 b.34.2.1,c.37.1.1 106358,106359 1ckeA 227 0.000623 c.37.1.1 31846 1vhtA 218 0.000813 c.37.1.1 100700 1uj2A 252 0.000872 c.37.1.6 99452 3tmkA 216 0.000945 c.37.1.1 31920 1nksA 194 0.001007 c.37.1.1 31886 1khtA 192 0.001359 c.37.1.1 84401 1e6cA 173 0.001693 c.37.1.2 59296 1e4yA 214 0.001851 c.37.1.1,g.41.2.1 31901,45181 2f6rA 281 0.003015 2qgnA 322 0.003366 2ax4A 198 0.004539 1zd8A 227 0.004714 1xrjA 261 0.007730 c.37.1.6 122256 2ak3A 226 0.008048 c.37.1.1,g.41.2.1 31892,45193 1zin 217 0.01004 1gky 187 0.01057 2g1kA 176 0.01228 c.37.1.2 134519 1jjvA 206 0.01398 c.37.1.1 71698 1p3jA 217 0.01506 c.37.1.1,g.41.2.1 94022,94023 2qt1A 207 0.01521 1n3bA 216 0.01553 c.37.1.1 79959 3c8uA 208 0.01604 2eu8A 216 0.01605 1ak2A 233 0.01821 c.37.1.1,g.41.2.1 31894,45195 2rgxA 206 0.02254 1nn5A 215 0.02450 c.37.1.1 85892 1ltqA 301 0.02609 c.108.1.9,c.37.1.1 78208,78209 2bdtA 189 0.02669 c.37.1.25 128344 2ze7A 253 0.03040 1akyA 220 0.03689 c.37.1.1,g.41.2.1 31896,45197 3crrA 323 0.04971 1kgdA 180 0.05409 c.37.1.1 68582 2iyvA 184 0.05573 c.37.1.2 137812 1viaA 175 0.06085 c.37.1.2 100754 1ly1A 181 0.06217 c.37.1.1 74334 1zinA 217 0.06758 c.37.1.1,g.41.2.1 31915,45178 2rhmA 193 0.08151 1zuhA 168 0.09084 2an9A 207 0.1115 c.37.1.1 127037 3be4A 217 0.1190 2pezA 179 0.1287 1rkbA 173 0.1458 c.37.1.1 111854 1m7gA 211 0.1503 c.37.1.4 78724 2yvuA 186 0.2393 1s96A 219 0.2588 c.37.1.1 98740 2ga8A 359 0.3613 2grjA 192 0.3897 1sq5A 308 0.4617 c.37.1.6 105882 1a7jA 290 0.4717 c.37.1.6 31952 1kagA 173 0.5014 c.37.1.2 72249 1dekA 241 0.5980 c.37.1.1 31842 1esmA 316 0.7174 c.37.1.6 31953 1a7j 290 0.8835 1nijA 318 0.8972 c.37.1.10,d.237.1.1 85741,85742 1xjcA 169 0.9306 c.37.1.10 115387 1tq4A 413 1.106 c.37.1.8 107201 2p67A 341 1.238 2f1rA 171 1.342 1np6A 174 1.770 c.37.1.10 85954 2orwA 184 1.852 1xwiA 322 2.002 1x6vA 630 2.333 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 2p5tB 253 2.415 2oap1 511 2.612 2pt5A 168 2.743 1gvnB 287 2.809 c.37.1.21 76354 1tq6A 413 2.882 c.37.1.8 107202 2pt7A 330 2.968 1ihuA 589 3.006 c.37.1.10,c.37.1.10 62394,62395 2d2eA 250 3.012 1in4A 334 3.035 a.4.5.11,c.37.1.20 62597,62598 1xx6A 191 3.080 c.37.1.24,g.39.1.14 116139,116140 1njgA 250 3.133 c.37.1.20 85785 2eyuA 261 3.278 1a5t 334 3.723 2hf9A 226 4.112 2qm8A 337 4.152 1sxjC 340 4.492 a.80.1.1,c.37.1.20 106085,106086 2fh5B 214 4.704 c.37.1.8 133478 1g8yA 279 4.922 c.37.1.11 32302 1rz3A 201 5.244 c.37.1.6 98132 2r44A 331 5.488 2vhjA 331 5.675 1g6hA 257 5.730 c.37.1.12 60318 1ji0A 240 5.819 c.37.1.12 71665 3b9qA 302 6.003 1zu4A 320 6.105 2og2A 359 6.117 1w44A 331 6.330 c.37.1.11 114147 1htwA 158 6.386 c.37.1.18 71083 1l2tA 235 6.558 c.37.1.12 73514 1vplA 256 6.683 c.37.1.12 113966 2r2aA 199 7.470 1j8mF 297 7.899 a.24.13.1,c.37.1.10 62742,62743 1yrbA 262 7.969 c.37.1.10 123915 1e9rA 437 8.161 c.37.1.11 64827 2qy9A 309 9.880 1z47A 355 10.03 1a5tA 334 10.54 a.80.1.1,c.37.1.20 18450,32423 1w5tA 412 11.22 a.4.5.11,c.37.1.20 114255,114256 1sxjA 511 11.38 a.80.1.1,c.37.1.20 106081,106082 2chgA 226 12.20 2gzaA 361 12.72 1b0uA 262 12.87 c.37.1.12 32370 2ff7A 247 12.92 c.37.1.12 133377 1ls1A 295 13.59 a.24.13.1,c.37.1.10 78170,78171 2cbzA 237 14.24 2ihyA 279 14.39 2pmkA 243 14.91 3b9pA 297 15.14 1xbtA 193 15.19 c.37.1.24,g.39.1.14 115080,115081 1sgwA 214 15.27 c.37.1.12 105541 2bbsA 290 15.33 1wcv1 257 15.69 2px0A 296 16.10 2pzeA 229 16.30 1svmA 377 16.44 c.37.1.20 112126 1nsf 273 16.62 1pujA 282 17.26 c.37.1.8 88294 1oxsC 353 18.10 b.40.6.3,c.37.1.12 87519,87520 1vmaA 306 18.38 a.24.13.1,c.37.1.10 108887,108888 2pcjA 224 18.76 2ixeA 271 19.46 1d6jA 211 19.54 c.37.1.4 31940 1w78A 422 19.64 1tueA 212 20.02 c.37.1.20 107323 2qi9C 249 20.19 1rj9A 304 20.34 a.24.13.1,c.37.1.10 97553,97554 1cp2A 269 20.90 c.37.1.10 32269 2a5yB 549 21.31 1in6A 334 21.86 a.4.5.11,c.37.1.20 62601,62602 2afhE 289 22.23 c.37.1.10 126683 1yqtA 538 22.38 1ye8A 178 22.89 c.37.1.11 123010 2c8vA 288 23.14 c.37.1.10 130128 1g6oA 330 23.15 c.37.1.11 32430 1jx2B 315 23.77 c.37.1.8 67404 1xd8A 289 24.79 2k3aA 155 24.92 1oxxK 353 25.04 b.40.6.3,c.37.1.12 93715,93716 1sxjE 354 25.18 a.80.1.1,c.37.1.20 106089,106090 2yv5A 302 25.67 1bifA 469 26.33 c.37.1.7,c.60.1.4 31961,34003 1nlfA 279 26.53 c.37.1.11 85850 2it1A 362 27.55 1g3qA 237 27.74 c.37.1.10 60237 2g1uA 155 28.24 1lv7A 257 28.58 c.37.1.20 78232 2fnaA 357 29.05 a.4.5.11,c.37.1.20 133809,133810 1r0wA 286 29.35 c.37.1.12 96754 1w9iA 770 29.74 1knxA 312 31.22 c.98.2.1,c.91.1.2 77459,77460 1vcoA 550 31.51 c.23.16.1,c.37.1.10 108508,108509 1u0jA 267 31.70 c.37.1.20 107546 1xewX 182 32.03 c.37.1.12 115235 1us8A 147 32.95 c.37.1.12 99859 1n2zA 245 33.01 c.92.2.2 79865 1ko7A 314 33.01 c.98.2.1,c.91.1.2 72797,72798 1mvwA 840 33.78 i.15.1.1 79523 1g8fA 511 34.56 b.122.1.3,c.26.1.5,c.37.1.15 60348,60349,60350 1xmiA 291 34.73 c.37.1.12 115489 3bosA 242 34.99 2c9oA 456 35.13 1b5tA 275 36.27 c.1.23.1 29676 2z83A 459 36.39 1n25A 368 36.93 c.37.1.20 85264 2akaA 776 37.25 2v26A 784 37.58 3bs4A 260 38.37 1qhlA 227 40.04 c.37.1.12 32382 1d0yA 761 41.75 b.34.3.1,c.37.1.9 24581,32178 2ozeA 298 41.96 1i52A 236 42.47 c.68.1.13 61767 1wywA 230 43.13 2p65A 187 43.22 1n4aA 252 43.36 c.92.2.2 85317 2bkhA 814 43.69 1g291 372 45.30 2cxxA 190 45.91 c.37.1.8 131013 1j8yF 297 46.27 a.24.13.1,c.37.1.10 62747,62748 1egaA 301 46.46 c.37.1.8,d.52.3.1 32150,38836 1d2nA 272 46.56 c.37.1.20 32428 1f2tA 149 47.02 c.37.1.12 32373 2gdjA 264 47.48 c.37.1.11 135018 1lvk 762 49.23 2gxaA 274 49.72 1efdN 266 50.00 c.92.2.1 35597 1h65A 270 52.05 c.37.1.8 65640 2cvhA 220 54.22 2jrnA 163 56.52 2qmoA 220 58.09 1t2aA 375 61.42 c.2.1.2 99078 2h17A 181 63.68 1t9hA 307 64.54 b.40.4.5,c.37.1.8 112358,112359 1ewqA 765 64.64 a.113.1.1,c.37.1.12,c.55.6.1,d.75.2.1 19069,32383,33740,39743 2b8wA 328 65.10 1wf3A 301 66.83 c.37.1.8,d.52.3.1 114574,114575 1zi8A 236 67.07 1qopA 268 67.87 c.1.2.4 28570 1e8cA 498 68.66 c.98.1.1,c.59.1.1,c.72.2.1 59377,59378,59379 1w7jA 795 72.41 b.34.3.1,c.37.1.9 120688,120689 2ffqA 171 73.05 2qgzA 308 73.56 2bekA 257 73.85 2r7aA 256 74.01 2gj8A 172 74.79 c.37.1.8 135270 1byi 224 74.85 1lnzA 342 74.90 b.117.1.1,c.37.1.8 78112,78113 2pjzA 263 75.45 3cox 507 75.61 1jbkA 195 75.99 c.37.1.20 71631 2dkaA 544 76.81 2dr3A 247 76.88 1f6bA 198 78.15 c.37.1.8 64986 1zcaA 359 79.27 a.66.1.1,c.37.1.8 124897,124898 1nrjB 218 80.99 c.37.1.8 86125 2nq2C 253 83.16 1lw7A 365 83.59 c.26.1.3,c.37.1.1 74295,74296 2q8pA 260 84.59 1o5zA 442 84.77 c.59.1.2,c.72.2.2 92530,92531 2e87A 357 86.32 1azsC 388 86.38 a.66.1.1,c.37.1.8 18203,32086 1bif 469 88.68 2v8oA 444 88.83 2h57A 190 89.99