# List of top-scoring protein chains for t04-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2pbrA 195 4.57e-09 1p5zB 263 7.38e-08 c.37.1.1 87815 2ccjA 205 7.84e-08 1z8fA 228 1.04e-07 1z6gA 218 1.11e-07 2qorA 204 1.23e-07 1znwA 207 1.34e-07 c.37.1.1 125412 4tmkA 213 1.38e-07 c.37.1.1 31930 2plrA 213 2.31e-07 2j41A 207 3.84e-07 2z0hA 197 9.47e-07 1gtvA 214 1.04e-06 c.37.1.1 70537 2bwjA 199 1.51e-06 1ex7A 186 2.43e-06 c.37.1.1 59537 1ukzA 203 3.14e-06 c.37.1.1 31840 2c95A 196 3.54e-06 2vp4A 230 5.30e-06 1s4qA 228 6.76e-06 c.37.1.1 98507 1p6xA 334 1.19e-05 c.37.1.1 94195 1qhiA 366 1.46e-05 c.37.1.1 31860 1ukz 203 1.63e-05 1ki9A 192 1.81e-05 c.37.1.1 84404 1e2kA 331 2.24e-05 c.37.1.1 31854 1kjwA 295 3.97e-05 b.34.2.1,c.37.1.1 68643,68644 1y63A 184 4.18e-05 c.37.1.1 116494 1of1A 376 4.57e-05 c.37.1.1 103924 2cdnA 201 5.04e-05 c.37.1.1 130289 1oe0A 230 5.49e-05 c.37.1.1 92788 2axpA 173 5.89e-05 c.37.1.1 127497 1zm7A 230 6.50e-05 1qf9A 194 0.000113 c.37.1.1 31848 1qhxA 178 0.000150 c.37.1.3 31936 1xrjA 261 0.000172 c.37.1.6 122256 1vhtA 218 0.000180 c.37.1.1 100700 1nksA 194 0.000181 c.37.1.1 31886 1t3lA 337 0.000200 b.34.2.1,c.37.1.1 106358,106359 1uj2A 252 0.000219 c.37.1.6 99452 1knqA 175 0.000370 c.37.1.17 72786 1t0hB 224 0.000461 c.37.1.1 106208 1e6cA 173 0.000495 c.37.1.2 59296 1kdoA 227 0.000710 c.37.1.1 68478 2ax4A 198 0.000712 2ak3A 226 0.000798 c.37.1.1,g.41.2.1 31892,45193 2f6rA 281 0.001005 1p3jA 217 0.001250 c.37.1.1,g.41.2.1 94022,94023 1e4yA 214 0.001276 c.37.1.1,g.41.2.1 31901,45181 1ckeA 227 0.001447 c.37.1.1 31846 2qgnA 322 0.001589 1zd8A 227 0.001764 1khtA 192 0.001911 c.37.1.1 84401 3tmkA 216 0.001963 c.37.1.1 31920 1zin 217 0.002040 2g1kA 176 0.002215 c.37.1.2 134519 1ak2A 233 0.002273 c.37.1.1,g.41.2.1 31894,45195 1n3bA 216 0.002697 c.37.1.1 79959 2bdtA 189 0.003178 c.37.1.25 128344 2iyvA 184 0.003551 c.37.1.2 137812 3c8uA 208 0.004149 1gky 187 0.004217 1nn5A 215 0.005754 c.37.1.1 85892 2rgxA 206 0.006018 1jjvA 206 0.006263 c.37.1.1 71698 2qt1A 207 0.007058 2eu8A 216 0.007914 2an9A 207 0.009211 c.37.1.1 127037 1zinA 217 0.01146 c.37.1.1,g.41.2.1 31915,45178 3crrA 323 0.01333 1zuhA 168 0.01556 1viaA 175 0.01644 c.37.1.2 100754 2pt5A 168 0.02320 1ltqA 301 0.02512 c.108.1.9,c.37.1.1 78208,78209 2rhmA 193 0.03247 1ly1A 181 0.03272 c.37.1.1 74334 1rkbA 173 0.03522 c.37.1.1 111854 1kgdA 180 0.03650 c.37.1.1 68582 3be4A 217 0.03706 1kagA 173 0.03827 c.37.1.2 72249 2yvuA 186 0.03935 2ga8A 359 0.04593 1akyA 220 0.04621 c.37.1.1,g.41.2.1 31896,45197 1m7gA 211 0.05276 c.37.1.4 78724 2pezA 179 0.05392 1s96A 219 0.05606 c.37.1.1 98740 1sq5A 308 0.1101 c.37.1.6 105882 2ze7A 253 0.2148 1gvnB 287 0.2878 c.37.1.21 76354 2grjA 192 0.5820 1xjcA 169 0.6601 c.37.1.10 115387 1a7jA 290 0.7754 c.37.1.6 31952 2f1rA 171 0.8548 2p5tB 253 0.8638 1esmA 316 0.9600 c.37.1.6 31953 1x6vA 630 0.9749 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 1a7j 290 1.032 1dekA 241 1.055 c.37.1.1 31842 1rz3A 201 1.271 c.37.1.6 98132 1np6A 174 1.306 c.37.1.10 85954 1tq4A 413 1.950 c.37.1.8 107201 1in4A 334 2.264 a.4.5.11,c.37.1.20 62597,62598 2p67A 341 2.661 2fh5B 214 3.964 c.37.1.8 133478 1w44A 331 4.013 c.37.1.11 114147 1nijA 318 4.019 c.37.1.10,d.237.1.1 85741,85742 2orwA 184 4.400 1g8fA 511 4.756 b.122.1.3,c.26.1.5,c.37.1.15 60348,60349,60350 2cbzA 237 4.797 2vhjA 331 4.853 2pt7A 330 4.873 1ihuA 589 5.207 c.37.1.10,c.37.1.10 62394,62395 2d2eA 250 5.328 2eyuA 261 5.328 1sxjA 511 5.919 a.80.1.1,c.37.1.20 106081,106082 1g6hA 257 6.002 c.37.1.12 60318 1ji0A 240 6.625 c.37.1.12 71665 1vplA 256 6.772 c.37.1.12 113966 1z47A 355 6.883 1in6A 334 7.459 a.4.5.11,c.37.1.20 62601,62602 1sxjC 340 7.793 a.80.1.1,c.37.1.20 106085,106086 2pzeA 229 7.940 2bbsA 290 8.386 1xmiA 291 8.619 c.37.1.12 115489 1d6jA 211 8.750 c.37.1.4 31940 1xwiA 322 9.663 1a5t 334 10.13 3b9pA 297 10.54 1xx6A 191 11.06 c.37.1.24,g.39.1.14 116139,116140 1l2tA 235 11.60 c.37.1.12 73514 1r0wA 286 12.35 c.37.1.12 96754 1tq6A 413 12.36 c.37.1.8 107202 2r44A 331 12.59 2qi9C 249 12.72 2it1A 362 13.94 1b0uA 262 14.08 c.37.1.12 32370 2ff7A 247 14.23 c.37.1.12 133377 3b9qA 302 14.38 1mkyA 439 14.53 c.37.1.8,c.37.1.8,d.52.5.1 79250,79251,79252 1sgwA 214 14.62 c.37.1.12 105541 1mvwA 840 15.50 i.15.1.1 79523 2ihyA 279 15.86 2og2A 359 17.02 1e9rA 437 17.12 c.37.1.11 64827 1g8yA 279 17.16 c.37.1.11 32302 1ye8A 178 17.43 c.37.1.11 123010 1odfA 290 17.93 c.37.1.6 92782 2qy9A 309 18.07 1oxsC 353 18.46 b.40.6.3,c.37.1.12 87519,87520 1yrbA 262 18.71 c.37.1.10 123915 1jx2B 315 18.85 c.37.1.8 67404 1w5tA 412 19.25 a.4.5.11,c.37.1.20 114255,114256 1njgA 250 19.56 c.37.1.20 85785 1g6oA 330 19.99 c.37.1.11 32430 1b5tA 275 20.48 c.1.23.1 29676 2qm8A 337 20.57 2pcjA 224 21.02 2px0A 296 22.12 2ixeA 271 22.41 1yqtA 538 23.16 2pmkA 243 23.47 2oap1 511 25.29 2pjzA 263 25.57 1egaA 301 26.54 c.37.1.8,d.52.3.1 32150,38836 1mx3A 347 28.93 c.2.1.4,c.23.12.1 79638,79639 2chgA 226 29.08 1bifA 469 29.64 c.37.1.7,c.60.1.4 31961,34003 1ycdA 243 30.12 1sxjE 354 31.32 a.80.1.1,c.37.1.20 106089,106090 1j8mF 297 33.27 a.24.13.1,c.37.1.10 62742,62743 2fnaA 357 34.51 a.4.5.11,c.37.1.20 133809,133810 2p65A 187 34.65 2bkhA 814 34.86 2v8oA 444 35.14 1oxxK 353 35.80 b.40.6.3,c.37.1.12 93715,93716 1efdN 266 36.52 c.92.2.1 35597 1wywA 230 37.30 1rj9A 304 37.76 a.24.13.1,c.37.1.10 97553,97554 2b8wA 328 37.94 2nq2C 253 38.29 1t9hA 307 38.64 b.40.4.5,c.37.1.8 112358,112359 1w9iA 770 40.76 2dykA 161 41.24 1zu4A 320 41.57 1ko7A 314 41.80 c.98.2.1,c.91.1.2 72797,72798 1lv7A 257 42.24 c.37.1.20 78232 2gzaA 361 42.48 2qgzA 308 44.86 2qmoA 220 45.03 1n2zA 245 46.01 c.92.2.2 79865 1nsf 273 46.83 2f7tA 227 48.36 2k3aA 155 48.36 2hf9A 226 49.65 2dr3A 247 50.84 1jbkA 195 53.62 c.37.1.20 71631 1knxA 312 55.71 c.98.2.1,c.91.1.2 77459,77460 1ls1A 295 57.18 a.24.13.1,c.37.1.10 78170,78171 1st9A 143 57.41 c.47.1.10 98987 3rabA 169 59.01 c.37.1.8 32018 2akaB 299 59.37 c.37.1.8 126914 1sc6A 404 62.06 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 2a9iA 113 63.43 2yv5A 302 63.72 2reb 352 64.55 1n4aA 252 65.15 c.92.2.2 85317 2akaA 776 65.34 3bs4A 260 65.54 1htwA 158 69.12 c.37.1.18 71083 2h17A 181 69.26 2fp3A 316 70.40 1a5tA 334 70.51 a.80.1.1,c.37.1.20 18450,32423 1d2nA 272 70.56 c.37.1.20 32428 1g55A 343 70.97 c.66.1.26 34247 2c8vA 288 71.26 c.37.1.10 130128 1kmqA 184 73.37 c.37.1.8 84412 1g38A 393 73.67 c.66.1.27,d.287.1.1 111567,111568 2g6bA 180 74.31 c.37.1.8 134701 1tueA 212 76.18 c.37.1.20 107323 1zp4A 304 76.49 1kngA 156 76.57 c.47.1.10 72777 2r2aA 199 76.86 1z5yE 149 77.02 c.47.1.10 124498 2r7aA 256 77.97 1jalA 363 81.35 c.37.1.8,d.15.10.2 84138,84139 3bosA 242 85.02 2i1qA 322 85.61 a.60.4.1,c.37.1.11 136984,136985 1svmA 377 86.31 c.37.1.20 112126 1t2aA 375 86.83 c.2.1.2 99078 1qhlA 227 88.06 c.37.1.12 32382 1vmaA 306 88.46 a.24.13.1,c.37.1.10 108887,108888 1nlfA 279 89.50 c.37.1.11 85850