# List of top-scoring protein chains for t04-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2pbrA 195 2.21e-08 2ccjA 205 1.36e-07 4tmkA 213 1.82e-07 c.37.1.1 31930 1p5zB 263 1.99e-07 c.37.1.1 87815 2plrA 213 4.13e-07 2qorA 204 1.45e-06 2z0hA 197 1.50e-06 1z6gA 218 1.69e-06 2vp4A 230 2.42e-06 2j41A 207 2.72e-06 1gtvA 214 3.14e-06 c.37.1.1 70537 1znwA 207 3.39e-06 c.37.1.1 125412 1z8fA 228 3.41e-06 2bwjA 199 7.11e-06 1p6xA 334 9.19e-06 c.37.1.1 94195 1ex7A 186 2.29e-05 c.37.1.1 59537 1zm7A 230 3.06e-05 1of1A 376 3.69e-05 c.37.1.1 103924 1e2kA 331 4.35e-05 c.37.1.1 31854 1oe0A 230 4.73e-05 c.37.1.1 92788 1qhiA 366 5.30e-05 c.37.1.1 31860 2c95A 196 5.71e-05 1ukzA 203 5.78e-05 c.37.1.1 31840 1ki9A 192 6.01e-05 c.37.1.1 84404 2cdnA 201 6.46e-05 c.37.1.1 130289 1s4qA 228 6.47e-05 c.37.1.1 98507 1kjwA 295 0.000139 b.34.2.1,c.37.1.1 68643,68644 1y63A 184 0.000342 c.37.1.1 116494 1ukz 203 0.000409 1t0hB 224 0.000473 c.37.1.1 106208 2axpA 173 0.000580 c.37.1.1 127497 1vhtA 218 0.000910 c.37.1.1 100700 1qhxA 178 0.000921 c.37.1.3 31936 1t3lA 337 0.001003 b.34.2.1,c.37.1.1 106358,106359 1uj2A 252 0.001099 c.37.1.6 99452 1qf9A 194 0.001232 c.37.1.1 31848 1xrjA 261 0.001272 c.37.1.6 122256 1ckeA 227 0.001349 c.37.1.1 31846 1nksA 194 0.001553 c.37.1.1 31886 1kdoA 227 0.001648 c.37.1.1 68478 3tmkA 216 0.001777 c.37.1.1 31920 1e4yA 214 0.001799 c.37.1.1,g.41.2.1 31901,45181 1e6cA 173 0.002061 c.37.1.2 59296 1knqA 175 0.002894 c.37.1.17 72786 2qgnA 322 0.003173 1khtA 192 0.003872 c.37.1.1 84401 2f6rA 281 0.004661 1zd8A 227 0.007651 2ak3A 226 0.009197 c.37.1.1,g.41.2.1 31892,45193 1n3bA 216 0.01090 c.37.1.1 79959 2qt1A 207 0.01130 1ak2A 233 0.01202 c.37.1.1,g.41.2.1 31894,45195 2ax4A 198 0.01217 1jjvA 206 0.01457 c.37.1.1 71698 1nn5A 215 0.01500 c.37.1.1 85892 2rgxA 206 0.01700 1gky 187 0.01832 2eu8A 216 0.02062 2g1kA 176 0.02167 c.37.1.2 134519 1p3jA 217 0.02270 c.37.1.1,g.41.2.1 94022,94023 3c8uA 208 0.03284 3crrA 323 0.03664 2bdtA 189 0.03915 c.37.1.25 128344 2ze7A 253 0.04149 1kgdA 180 0.04244 c.37.1.1 68582 1zin 217 0.04568 1zinA 217 0.05647 c.37.1.1,g.41.2.1 31915,45178 1ltqA 301 0.06586 c.108.1.9,c.37.1.1 78208,78209 1akyA 220 0.06760 c.37.1.1,g.41.2.1 31896,45197 2iyvA 184 0.07177 c.37.1.2 137812 1viaA 175 0.07272 c.37.1.2 100754 3be4A 217 0.0996 1zuhA 168 0.0998 2an9A 207 0.1014 c.37.1.1 127037 1sq5A 308 0.1390 c.37.1.6 105882 2ga8A 359 0.1979 2pezA 179 0.1981 1kagA 173 0.2156 c.37.1.2 72249 1m7gA 211 0.2317 c.37.1.4 78724 1s96A 219 0.2772 c.37.1.1 98740 1ly1A 181 0.3505 c.37.1.1 74334 2rhmA 193 0.3563 1rkbA 173 0.3919 c.37.1.1 111854 1dekA 241 0.4295 c.37.1.1 31842 2yvuA 186 0.6069 2pt5A 168 0.6588 2grjA 192 0.7285 1tq4A 413 0.8224 c.37.1.8 107201 1xjcA 169 1.136 c.37.1.10 115387 1esmA 316 1.157 c.37.1.6 31953 1a7jA 290 1.497 c.37.1.6 31952 1nijA 318 1.560 c.37.1.10,d.237.1.1 85741,85742 2f1rA 171 1.609 2orwA 184 1.613 1ihuA 589 1.900 c.37.1.10,c.37.1.10 62394,62395 1np6A 174 1.964 c.37.1.10 85954 2oap1 511 2.090 2p5tB 253 2.153 1xx6A 191 2.379 c.37.1.24,g.39.1.14 116139,116140 1tq6A 413 2.384 c.37.1.8 107202 2p67A 341 2.458 1gvnB 287 2.675 c.37.1.21 76354 1a7j 290 2.819 1xwiA 322 3.141 2eyuA 261 3.389 1rz3A 201 3.677 c.37.1.6 98132 2fh5B 214 3.936 c.37.1.8 133478 1g8yA 279 3.937 c.37.1.11 32302 2pt7A 330 3.945 1x6vA 630 4.192 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 2og2A 359 4.299 1in4A 334 4.415 a.4.5.11,c.37.1.20 62597,62598 2gzaA 361 4.729 3b9qA 302 4.792 1w44A 331 5.317 c.37.1.11 114147 1njgA 250 5.350 c.37.1.20 85785 2hf9A 226 5.441 1a5t 334 5.442 2vhjA 331 5.736 1zu4A 320 5.791 1wcv1 257 6.181 2d2eA 250 6.246 1vplA 256 6.282 c.37.1.12 113966 2bbsA 290 6.485 2r44A 331 6.747 1ji0A 240 6.767 c.37.1.12 71665 1xbtA 193 6.768 c.37.1.24,g.39.1.14 115080,115081 1sxjC 340 6.771 a.80.1.1,c.37.1.20 106085,106086 2qm8A 337 6.896 2r2aA 199 7.971 1g6hA 257 7.988 c.37.1.12 60318 1z47A 355 8.231 1e9rA 437 8.484 c.37.1.11 64827 1sgwA 214 8.570 c.37.1.12 105541 1htwA 158 8.607 c.37.1.18 71083 2cbzA 237 8.988 2ihyA 279 10.03 2it1A 362 10.07 2ff7A 247 11.92 c.37.1.12 133377 1yrbA 262 12.01 c.37.1.10 123915 1jx2B 315 12.05 c.37.1.8 67404 2pzeA 229 12.12 2qi9C 249 12.41 1g3qA 237 12.77 c.37.1.10 60237 1g6oA 330 12.78 c.37.1.11 32430 2qy9A 309 12.79 1a5tA 334 12.84 a.80.1.1,c.37.1.20 18450,32423 1l2tA 235 13.62 c.37.1.12 73514 1w5tA 412 13.99 a.4.5.11,c.37.1.20 114255,114256 1xmiA 291 14.04 c.37.1.12 115489 1yqtA 538 14.04 3b9pA 297 14.39 1r0wA 286 14.57 c.37.1.12 96754 1ye8A 178 14.58 c.37.1.11 123010 2pmkA 243 16.08 1sxjA 511 16.37 a.80.1.1,c.37.1.20 106081,106082 2c9oA 456 16.51 1g8fA 511 16.55 b.122.1.3,c.26.1.5,c.37.1.15 60348,60349,60350 1j8mF 297 17.03 a.24.13.1,c.37.1.10 62742,62743 2c8vA 288 17.30 c.37.1.10 130128 2k3aA 155 19.01 1b0uA 262 19.92 c.37.1.12 32370 1xewX 182 20.30 c.37.1.12 115235 2fnaA 357 20.74 a.4.5.11,c.37.1.20 133809,133810 1sxjE 354 21.04 a.80.1.1,c.37.1.20 106089,106090 2px0A 296 21.06 1ls1A 295 21.83 a.24.13.1,c.37.1.10 78170,78171 2ixeA 271 21.84 2afhE 289 22.50 c.37.1.10 126683 1d6jA 211 24.01 c.37.1.4 31940 1pujA 282 24.08 c.37.1.8 88294 1cp2A 269 24.18 c.37.1.10 32269 3bs4A 260 25.21 1lv7A 257 25.31 c.37.1.20 78232 2chgA 226 25.60 1ko7A 314 27.95 c.98.2.1,c.91.1.2 72797,72798 2pcjA 224 28.29 1svmA 377 28.47 c.37.1.20 112126 2dr3A 247 29.41 2bekA 257 29.50 1us8A 147 29.81 c.37.1.12 99859 1nsf 273 30.35 1xd8A 289 30.41 2gdjA 264 30.43 c.37.1.11 135018 2nq2C 253 32.19 2pjzA 263 33.18 1nlfA 279 33.41 c.37.1.11 85850 1bifA 469 34.65 c.37.1.7,c.60.1.4 31961,34003 1knxA 312 34.86 c.98.2.1,c.91.1.2 77459,77460 1vcoA 550 36.16 c.23.16.1,c.37.1.10 108508,108509 1w78A 422 38.07 1byi 224 38.11 3bosA 242 38.22 1mvwA 840 38.87 i.15.1.1 79523 2bkhA 814 41.36 2yv5A 302 41.45 1h65A 270 44.02 c.37.1.8 65640 1w9iA 770 44.06 1tueA 212 46.04 c.37.1.20 107323 2akaA 776 46.87 1in6A 334 47.32 a.4.5.11,c.37.1.20 62601,62602 2b8wA 328 47.44 1vmaA 306 47.67 a.24.13.1,c.37.1.10 108887,108888 1t9hA 307 47.81 b.40.4.5,c.37.1.8 112358,112359 1f2tA 149 48.16 c.37.1.12 32373 1oxsC 353 48.37 b.40.6.3,c.37.1.12 87519,87520 1n2zA 245 49.11 c.92.2.2 79865 2z83A 459 52.34 1n4aA 252 57.75 c.92.2.2 85317 2p65A 187 59.41 1gg4A 452 59.59 c.59.1.1,c.98.1.1,c.72.2.1 33957,58985,58986 1lnzA 342 59.83 b.117.1.1,c.37.1.8 78112,78113 2h17A 181 60.60 2ffqA 171 60.75 2cvhA 220 60.85 1jbkA 195 62.93 c.37.1.20 71631 1e8cA 498 63.56 c.98.1.1,c.59.1.1,c.72.2.1 59377,59378,59379 2cxxA 190 65.62 c.37.1.8 131013 2dkaA 544 65.72 1lvk 762 68.94 2qmoA 220 70.18 2jrnA 163 70.75 3c5cA 187 71.03 2gj8A 172 72.34 c.37.1.8 135270 2v26A 784 72.97 2ozeA 298 74.86 1qhlA 227 75.49 c.37.1.12 32382 2rebA 352 76.15 c.37.1.11,d.48.1.1 32282,38767 1yzqA 170 76.53 c.37.1.8 124286 1cr1A 296 76.56 c.37.1.11 32286 1t2aA 375 76.94 c.2.1.2 99078 1oxxK 353 77.14 b.40.6.3,c.37.1.12 93715,93716 1b5tA 275 78.78 c.1.23.1 29676 2dpxA 174 79.53 1kmqA 184 79.69 c.37.1.8 84412 1egaA 301 81.63 c.37.1.8,d.52.3.1 32150,38836 1wf3A 301 82.39 c.37.1.8,d.52.3.1 114574,114575 1wywA 230 82.67 2g6bA 180 82.77 c.37.1.8 134701 1efdN 266 82.97 c.92.2.1 35597 1z2aA 168 83.20 c.37.1.8 124374 2r7aA 256 83.99 1d0yA 761 84.27 b.34.3.1,c.37.1.9 24581,32178 1i52A 236 85.17 c.68.1.13 61767 2qgzA 308 85.51 1z0jA 170 86.73 c.37.1.8 124319 1n25A 368 86.89 c.37.1.20 85264 1ewqA 765 88.02 a.113.1.1,c.37.1.12,c.55.6.1,d.75.2.1 19069,32383,33740,39743