# List of top-scoring protein chains for t04-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2pbrA 195 9.80e-07 2ccjA 205 2.45e-06 4tmkA 213 3.85e-06 c.37.1.1 31930 1p5zB 263 5.47e-06 c.37.1.1 87815 2plrA 213 8.42e-06 1z6gA 218 1.77e-05 2qorA 204 2.42e-05 2z0hA 197 2.55e-05 1gtvA 214 2.95e-05 c.37.1.1 70537 1znwA 207 3.76e-05 c.37.1.1 125412 2j41A 207 3.94e-05 1z8fA 228 5.41e-05 2vp4A 230 6.25e-05 2bwjA 199 0.000118 1ex7A 186 0.000185 c.37.1.1 59537 1p6xA 334 0.000276 c.37.1.1 94195 1qhiA 366 0.000395 c.37.1.1 31860 1zm7A 230 0.000476 1oe0A 230 0.000520 c.37.1.1 92788 2c95A 196 0.000594 1s4qA 228 0.000674 c.37.1.1 98507 2cdnA 201 0.000727 c.37.1.1 130289 1ukzA 203 0.000755 c.37.1.1 31840 1of1A 376 0.000795 c.37.1.1 103924 1ki9A 192 0.000822 c.37.1.1 84404 1e2kA 331 0.001232 c.37.1.1 31854 1kjwA 295 0.001349 b.34.2.1,c.37.1.1 68643,68644 1ukz 203 0.001788 1y63A 184 0.001821 c.37.1.1 116494 2axpA 173 0.002277 c.37.1.1 127497 1qf9A 194 0.003779 c.37.1.1 31848 1kdoA 227 0.004520 c.37.1.1 68478 1t0hB 224 0.004573 c.37.1.1 106208 1xrjA 261 0.004956 c.37.1.6 122256 1vhtA 218 0.005117 c.37.1.1 100700 1qhxA 178 0.005129 c.37.1.3 31936 1uj2A 252 0.005934 c.37.1.6 99452 1ckeA 227 0.008177 c.37.1.1 31846 3tmkA 216 0.008278 c.37.1.1 31920 1e4yA 214 0.008613 c.37.1.1,g.41.2.1 31901,45181 1knqA 175 0.009850 c.37.1.17 72786 1e6cA 173 0.01075 c.37.1.2 59296 1nksA 194 0.01336 c.37.1.1 31886 2qgnA 322 0.01720 1khtA 192 0.02011 c.37.1.1 84401 2f6rA 281 0.02112 2ax4A 198 0.02224 2eu8A 216 0.03068 1zd8A 227 0.03146 1n3bA 216 0.03636 c.37.1.1 79959 1nn5A 215 0.04623 c.37.1.1 85892 1gky 187 0.04703 3crrA 323 0.05127 1jjvA 206 0.05620 c.37.1.1 71698 1ak2A 233 0.05740 c.37.1.1,g.41.2.1 31894,45195 2qt1A 207 0.05827 1p3jA 217 0.06245 c.37.1.1,g.41.2.1 94022,94023 2ak3A 226 0.06436 c.37.1.1,g.41.2.1 31892,45193 2rgxA 206 0.07127 1zin 217 0.07390 1t3lA 337 0.08027 b.34.2.1,c.37.1.1 106358,106359 1akyA 220 0.09738 c.37.1.1,g.41.2.1 31896,45197 2bdtA 189 0.1095 c.37.1.25 128344 3c8uA 208 0.1148 2g1kA 176 0.1233 c.37.1.2 134519 1ly1A 181 0.1252 c.37.1.1 74334 1ltqA 301 0.1387 c.108.1.9,c.37.1.1 78208,78209 2ze7A 253 0.1494 1kgdA 180 0.1520 c.37.1.1 68582 2rhmA 193 0.1933 1viaA 175 0.1952 c.37.1.2 100754 1zinA 217 0.1985 c.37.1.1,g.41.2.1 31915,45178 1m7gA 211 0.2202 c.37.1.4 78724 2pezA 179 0.2292 2iyvA 184 0.2488 c.37.1.2 137812 2an9A 207 0.2506 c.37.1.1 127037 1s96A 219 0.2766 c.37.1.1 98740 3be4A 217 0.2868 1zuhA 168 0.2971 1rkbA 173 0.5861 c.37.1.1 111854 1kagA 173 0.6081 c.37.1.2 72249 1sq5A 308 0.6250 c.37.1.6 105882 2pt5A 168 0.7199 2yvuA 186 0.8479 2grjA 192 0.9197 2ga8A 359 1.078 1xjcA 169 1.978 c.37.1.10 115387 2eyuA 261 2.734 1esmA 316 3.501 c.37.1.6 31953 2p67A 341 3.521 2orwA 184 3.571 1tq6A 413 3.808 c.37.1.8 107202 1a7jA 290 4.113 c.37.1.6 31952 2pt7A 330 4.116 1cp2A 269 4.138 c.37.1.10 32269 1jx2B 315 4.538 c.37.1.8 67404 2f1rA 171 4.570 1in4A 334 4.585 a.4.5.11,c.37.1.20 62597,62598 1a7j 290 4.813 1dekA 241 4.856 c.37.1.1 31842 1e9rA 437 4.876 c.37.1.11 64827 2og2A 359 4.880 1np6A 174 5.161 c.37.1.10 85954 3b9qA 302 5.262 2p5tB 253 5.434 1x6vA 630 5.537 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 2gzaA 361 5.635 1g8yA 279 5.739 c.37.1.11 32302 1tq4A 413 6.056 c.37.1.8 107201 1zu4A 320 6.242 2r2aA 199 6.457 2qm8A 337 6.628 1ji0A 240 6.954 c.37.1.12 71665 1rz3A 201 7.504 c.37.1.6 98132 1xx6A 191 7.568 c.37.1.24,g.39.1.14 116139,116140 2fh5B 214 8.079 c.37.1.8 133478 1wcv1 257 8.699 1vplA 256 9.134 c.37.1.12 113966 2bekA 257 9.348 1sxjC 340 9.656 a.80.1.1,c.37.1.20 106085,106086 1sxjA 511 9.770 a.80.1.1,c.37.1.20 106081,106082 2d2eA 250 10.55 2qi9C 249 10.56 1g6hA 257 11.32 c.37.1.12 60318 2vhjA 331 11.86 2reb 352 12.67 1j8mF 297 12.77 a.24.13.1,c.37.1.10 62742,62743 1njgA 250 12.78 c.37.1.20 85785 2r44A 331 13.43 1gg4A 452 13.84 c.59.1.1,c.98.1.1,c.72.2.1 33957,58985,58986 1gvnB 287 14.31 c.37.1.21 76354 1yrbA 262 16.30 c.37.1.10 123915 1w5tA 412 16.43 a.4.5.11,c.37.1.20 114255,114256 2afhE 289 16.47 c.37.1.10 126683 2hf9A 226 17.30 2ihyA 279 17.38 1htwA 158 17.79 c.37.1.18 71083 1sgwA 214 17.97 c.37.1.12 105541 2v26A 784 18.03 2ff7A 247 18.06 c.37.1.12 133377 1eg7A 557 18.28 c.37.1.10 32241 1xwiA 322 18.31 1w7jA 795 18.36 b.34.3.1,c.37.1.9 120688,120689 1mvwA 840 18.46 i.15.1.1 79523 1z47A 355 18.78 3bosA 242 19.41 1a5t 334 19.69 1lv7A 257 19.80 c.37.1.20 78232 2cbzA 237 19.95 1g6oA 330 19.97 c.37.1.11 32430 1nijA 318 20.63 c.37.1.10,d.237.1.1 85741,85742 1xbtA 193 21.56 c.37.1.24,g.39.1.14 115080,115081 1w44A 331 22.53 c.37.1.11 114147 2it1A 362 23.07 2bbsA 290 23.42 1g3qA 237 23.78 c.37.1.10 60237 1b0uA 262 23.96 c.37.1.12 32370 1l2tA 235 24.02 c.37.1.12 73514 1tueA 212 24.19 c.37.1.20 107323 2gdjA 264 24.44 c.37.1.11 135018 2pjzA 263 24.72 2oap1 511 24.73 1nlfA 279 25.50 c.37.1.11 85850 1xmiA 291 26.00 c.37.1.12 115489 2qy9A 309 26.24 2c8vA 288 26.65 c.37.1.10 130128 1p3dA 475 26.80 c.5.1.1,c.59.1.1,c.72.2.1 87728,87729,87730 2a5yB 549 27.68 1gl6A 436 28.07 c.37.1.11 70259 1sxjE 354 28.47 a.80.1.1,c.37.1.20 106089,106090 1ls1A 295 28.49 a.24.13.1,c.37.1.10 78170,78171 1vmaA 306 28.56 a.24.13.1,c.37.1.10 108887,108888 1cr1A 296 29.50 c.37.1.11 32286 2ixeA 271 29.59 3bs4A 260 30.72 1lvk 762 31.07 2pmkA 243 32.16 2px0A 296 34.09 3b9pA 297 34.32 2fnaA 357 38.97 a.4.5.11,c.37.1.20 133809,133810 2b8tA 223 40.02 c.37.1.24,g.39.1.14 128109,128110 1ihuA 589 40.04 c.37.1.10,c.37.1.10 62394,62395 2chgA 226 41.27 2pcjA 224 42.32 1pujA 282 42.36 c.37.1.8 88294 1qh8B 519 42.94 c.92.2.3 35634 1xewX 182 43.46 c.37.1.12 115235 1a5tA 334 43.60 a.80.1.1,c.37.1.20 18450,32423 1udxA 416 43.91 b.117.1.1,c.37.1.8,d.242.1.1 99228,99229,99230 3cox 507 44.39 2gxaA 274 45.38 2qu8A 228 45.59 1svmA 377 46.97 c.37.1.20 112126 2e87A 357 48.22 2nq2C 253 48.56 1yqtA 538 49.43 3cetA 334 50.96 2c9oA 456 52.10 2jdiA 510 53.25 2qmoA 220 53.58 2r7aA 256 53.64 1nsf 273 53.87 1d6jA 211 54.52 c.37.1.4 31940 1d3vA 323 55.13 c.42.1.1 32559 1qs0A 407 56.22 c.36.1.11 31829 2olrA 540 57.52 c.91.1.1,c.109.1.1 139140,139141 2dr3A 247 58.68 1w9iA 770 59.00 2b8wA 328 59.01 1r0wA 286 60.30 c.37.1.12 96754 2cvhA 220 61.61 1ko7A 314 62.68 c.98.2.1,c.91.1.2 72797,72798 1vcoA 550 63.13 c.23.16.1,c.37.1.10 108508,108509 1b5tA 275 63.31 c.1.23.1 29676 2rebA 352 64.43 c.37.1.11,d.48.1.1 32282,38767 1g8fA 511 64.86 b.122.1.3,c.26.1.5,c.37.1.15 60348,60349,60350 2pzeA 229 64.98 1mkyA 439 66.21 c.37.1.8,c.37.1.8,d.52.5.1 79250,79251,79252 1w78A 422 67.43 2aebA 322 67.52 c.42.1.1 126617 1us8A 147 68.65 c.37.1.12 99859 1n2zA 245 70.78 c.92.2.2 79865 2v8oA 444 72.03 2djiA 590 72.23 c.31.1.3,c.36.1.5,c.36.1.9 131544,131545,131546 1puiA 210 73.18 c.37.1.8 88292 1ji1A 637 73.52 b.1.18.2,b.71.1.1,c.1.8.1 71666,71667,71668 1jdwA 423 74.93 d.126.1.2 41129 1j8yF 297 75.83 a.24.13.1,c.37.1.10 62747,62748 2pceA 386 75.90 2dykA 161 76.28 1st9A 143 79.60 c.47.1.10 98987 1n4aA 252 80.43 c.92.2.2 85317 2cxxA 190 80.74 c.37.1.8 131013 1i52A 236 82.21 c.68.1.13 61767 1odfA 290 83.35 c.37.1.6 92782 1kmqA 184 85.81 c.37.1.8 84412 1gq6A 313 85.86 c.42.1.1 70341 2hk0A 309 86.02 2a1fA 247 86.27 c.73.1.3 125991 1uh4A 637 86.95 b.1.18.2,b.71.1.1,c.1.8.1 99391,99392,99393 2iutA 574 87.02 1h65A 270 89.54 c.37.1.8 65640 1g291 372 89.79