# List of top-scoring protein chains for t04-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2pbrA 195 8.13e-08 2ccjA 205 4.53e-07 1p5zB 263 5.91e-07 c.37.1.1 87815 4tmkA 213 6.84e-07 c.37.1.1 31930 2plrA 213 1.47e-06 2qorA 204 2.18e-06 1z8fA 228 4.14e-06 2j41A 207 4.35e-06 2z0hA 197 4.60e-06 1z6gA 218 4.71e-06 1znwA 207 4.94e-06 c.37.1.1 125412 2vp4A 230 7.75e-06 1gtvA 214 1.22e-05 c.37.1.1 70537 1p6xA 334 1.60e-05 c.37.1.1 94195 2bwjA 199 1.82e-05 1qhiA 366 5.40e-05 c.37.1.1 31860 1ex7A 186 5.49e-05 c.37.1.1 59537 1zm7A 230 6.77e-05 1ukzA 203 9.78e-05 c.37.1.1 31840 1e2kA 331 9.99e-05 c.37.1.1 31854 1s4qA 228 0.000113 c.37.1.1 98507 2c95A 196 0.000118 1kjwA 295 0.000149 b.34.2.1,c.37.1.1 68643,68644 1of1A 376 0.000154 c.37.1.1 103924 1ki9A 192 0.000199 c.37.1.1 84404 2cdnA 201 0.000267 c.37.1.1 130289 1oe0A 230 0.000379 c.37.1.1 92788 1ukz 203 0.000629 1y63A 184 0.000655 c.37.1.1 116494 1t0hB 224 0.000781 c.37.1.1 106208 1kdoA 227 0.001078 c.37.1.1 68478 2axpA 173 0.001239 c.37.1.1 127497 1t3lA 337 0.001351 b.34.2.1,c.37.1.1 106358,106359 3tmkA 216 0.001495 c.37.1.1 31920 1qf9A 194 0.001692 c.37.1.1 31848 1uj2A 252 0.002275 c.37.1.6 99452 1ckeA 227 0.002964 c.37.1.1 31846 1vhtA 218 0.003106 c.37.1.1 100700 1nksA 194 0.003335 c.37.1.1 31886 1khtA 192 0.003393 c.37.1.1 84401 1e4yA 214 0.003752 c.37.1.1,g.41.2.1 31901,45181 1knqA 175 0.003940 c.37.1.17 72786 1xrjA 261 0.004935 c.37.1.6 122256 1qhxA 178 0.005354 c.37.1.3 31936 2qgnA 322 0.006194 2f6rA 281 0.007237 1e6cA 173 0.009635 c.37.1.2 59296 1nn5A 215 0.01477 c.37.1.1 85892 2ax4A 198 0.01603 1ak2A 233 0.02737 c.37.1.1,g.41.2.1 31894,45195 2ak3A 226 0.02737 c.37.1.1,g.41.2.1 31892,45193 2g1kA 176 0.02913 c.37.1.2 134519 1p3jA 217 0.02955 c.37.1.1,g.41.2.1 94022,94023 1n3bA 216 0.03509 c.37.1.1 79959 2eu8A 216 0.03691 1zd8A 227 0.03851 2qt1A 207 0.04070 3c8uA 208 0.04410 1gky 187 0.04552 1jjvA 206 0.04728 c.37.1.1 71698 2rgxA 206 0.04739 1kgdA 180 0.05308 c.37.1.1 68582 3crrA 323 0.07240 1zin 217 0.07272 2ze7A 253 0.08440 1akyA 220 0.09583 c.37.1.1,g.41.2.1 31896,45197 2iyvA 184 0.1170 c.37.1.2 137812 2an9A 207 0.1207 c.37.1.1 127037 1zinA 217 0.1229 c.37.1.1,g.41.2.1 31915,45178 2bdtA 189 0.1487 c.37.1.25 128344 1zuhA 168 0.1518 1viaA 175 0.1577 c.37.1.2 100754 1ltqA 301 0.1966 c.108.1.9,c.37.1.1 78208,78209 3be4A 217 0.2399 1s96A 219 0.3038 c.37.1.1 98740 1sq5A 308 0.3374 c.37.1.6 105882 2ga8A 359 0.3442 2rhmA 193 0.5011 2pezA 179 0.5042 1ly1A 181 0.6888 c.37.1.1 74334 1rkbA 173 0.7228 c.37.1.1 111854 1kagA 173 0.7545 c.37.1.2 72249 1a7jA 290 0.8000 c.37.1.6 31952 2yvuA 186 1.022 1m7gA 211 1.077 c.37.1.4 78724 2orwA 184 1.206 2pt5A 168 1.331 2f1rA 171 1.456 1a7j 290 1.563 1dekA 241 1.661 c.37.1.1 31842 1esmA 316 2.013 c.37.1.6 31953 1tq4A 413 2.184 c.37.1.8 107201 1xwiA 322 2.431 2grjA 192 2.617 2p67A 341 2.731 1np6A 174 2.839 c.37.1.10 85954 2p5tB 253 3.726 1xx6A 191 3.828 c.37.1.24,g.39.1.14 116139,116140 1xjcA 169 4.040 c.37.1.10 115387 1ihuA 589 4.233 c.37.1.10,c.37.1.10 62394,62395 2d2eA 250 4.948 1gvnB 287 5.537 c.37.1.21 76354 2eyuA 261 5.562 1rz3A 201 5.976 c.37.1.6 98132 2qm8A 337 6.092 2oap1 511 7.042 1njgA 250 7.676 c.37.1.20 85785 1g8yA 279 7.890 c.37.1.11 32302 3b9pA 297 8.011 2pt7A 330 8.246 2r44A 331 8.262 1a5t 334 8.381 1ji0A 240 8.580 c.37.1.12 71665 2vhjA 331 9.196 3b9qA 302 9.291 1g6hA 257 9.846 c.37.1.12 60318 2og2A 359 10.14 1nijA 318 10.15 c.37.1.10,d.237.1.1 85741,85742 1l2tA 235 10.33 c.37.1.12 73514 1x6vA 630 10.56 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 1sxjE 354 10.57 a.80.1.1,c.37.1.20 106089,106090 2fh5B 214 10.68 c.37.1.8 133478 1w44A 331 10.85 c.37.1.11 114147 1vplA 256 10.93 c.37.1.12 113966 1tq6A 413 11.31 c.37.1.8 107202 1zu4A 320 11.72 1e9rA 437 12.21 c.37.1.11 64827 2qy9A 309 12.38 2r2aA 199 12.39 1htwA 158 12.75 c.37.1.18 71083 1sxjC 340 13.28 a.80.1.1,c.37.1.20 106085,106086 2px0A 296 13.78 1wcv1 257 13.92 1z47A 355 14.65 1yrbA 262 15.38 c.37.1.10 123915 2ihyA 279 16.38 1j8mF 297 17.23 a.24.13.1,c.37.1.10 62742,62743 1sxjA 511 18.92 a.80.1.1,c.37.1.20 106081,106082 2bbsA 290 18.96 2gzaA 361 19.39 1xbtA 193 20.02 c.37.1.24,g.39.1.14 115080,115081 2qi9C 249 20.19 1lv7A 257 20.46 c.37.1.20 78232 1jx2B 315 20.88 c.37.1.8 67404 1sgwA 214 21.33 c.37.1.12 105541 1b0uA 262 21.34 c.37.1.12 32370 2ff7A 247 22.74 c.37.1.12 133377 2cbzA 237 25.15 1in4A 334 25.26 a.4.5.11,c.37.1.20 62597,62598 2pcjA 224 25.30 1nsf 273 25.39 1nlfA 279 28.01 c.37.1.11 85850 2k3aA 155 29.26 1w5tA 412 29.84 a.4.5.11,c.37.1.20 114255,114256 1g3qA 237 30.01 c.37.1.10 60237 1cp2A 269 31.21 c.37.1.10 32269 2c8vA 288 32.19 c.37.1.10 130128 1mvwA 840 33.33 i.15.1.1 79523 2afhE 289 33.66 c.37.1.10 126683 2pzeA 229 33.78 2pmkA 243 34.34 1a5tA 334 34.59 a.80.1.1,c.37.1.20 18450,32423 1r0wA 286 34.83 c.37.1.12 96754 1xmiA 291 35.38 c.37.1.12 115489 1ls1A 295 36.29 a.24.13.1,c.37.1.10 78170,78171 1xd8A 289 37.01 2it1A 362 38.35 1knxA 312 38.75 c.98.2.1,c.91.1.2 77459,77460 1ko7A 314 40.18 c.98.2.1,c.91.1.2 72797,72798 2hf9A 226 40.60 1svmA 377 41.62 c.37.1.20 112126 3bs4A 260 42.77 2chgA 226 43.44 1w9iA 770 45.30 1xewX 182 47.32 c.37.1.12 115235 2b8wA 328 47.42 2bekA 257 47.46 2fnaA 357 49.80 a.4.5.11,c.37.1.20 133809,133810 1us8A 147 50.52 c.37.1.12 99859 2ozeA 298 53.66 1f2tA 149 56.90 c.37.1.12 32373 1pujA 282 58.40 c.37.1.8 88294 1tueA 212 58.40 c.37.1.20 107323 2p65A 187 58.61 1b5tA 275 58.91 c.1.23.1 29676 3cox 507 61.02 2jrnA 163 66.55 2z83A 459 68.21 1lw7A 365 68.57 c.26.1.3,c.37.1.1 74295,74296 2akaA 776 68.93 1rj9A 304 69.19 a.24.13.1,c.37.1.10 97553,97554 2yv5A 302 69.23 1vmaA 306 69.71 a.24.13.1,c.37.1.10 108887,108888 1lnzA 342 73.19 b.117.1.1,c.37.1.8 78112,78113 1yqtA 538 73.38 2ixeA 271 73.90 2cxxA 190 74.16 c.37.1.8 131013 2v8oA 444 75.13 2dr3A 247 76.34 1qhlA 227 76.99 c.37.1.12 32382 1h65A 270 77.08 c.37.1.8 65640 1efdN 266 78.60 c.92.2.1 35597 1d6jA 211 79.31 c.37.1.4 31940 2gdjA 264 79.51 c.37.1.11 135018 2g1uA 155 79.70 2v26A 784 83.94 2nq2C 253 84.08 1ye8A 178 84.37 c.37.1.11 123010 2bryA 497 86.56 1g6oA 330 88.40 c.37.1.11 32430 2qgzA 308 88.42 3bosA 242 89.04