# List of top-scoring protein chains for t04-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2pbrA 195 0.5589 2qorA 204 1.136 2ccjA 205 1.151 2plrA 213 1.157 1z6gA 218 1.355 1qf9A 194 1.601 c.37.1.1 31848 1ukzA 203 1.883 c.37.1.1 31840 1z8fA 228 1.975 1znwA 207 2.191 c.37.1.1 125412 2z0hA 197 2.262 1xrjA 261 2.463 c.37.1.6 122256 4tmkA 213 2.846 c.37.1.1 31930 1ex7A 186 2.928 c.37.1.1 59537 1p5zB 263 3.187 c.37.1.1 87815 1uj2A 252 4.294 c.37.1.6 99452 2j41A 207 4.526 2an9A 207 4.907 c.37.1.1 127037 2c95A 196 5.338 1ukz 203 5.394 2vp4A 230 5.434 1nn5A 215 5.439 c.37.1.1 85892 1qhxA 178 5.552 c.37.1.3 31936 1oe0A 230 5.679 c.37.1.1 92788 1kdoA 227 5.839 c.37.1.1 68478 2bwjA 199 6.598 2ak3A 226 6.889 c.37.1.1,g.41.2.1 31892,45193 1s4qA 228 7.667 c.37.1.1 98507 2cdnA 201 7.739 c.37.1.1 130289 1ki9A 192 7.749 c.37.1.1 84404 2axpA 173 7.887 c.37.1.1 127497 1s96A 219 8.571 c.37.1.1 98740 1ak2A 233 8.675 c.37.1.1,g.41.2.1 31894,45195 1zd8A 227 9.078 2qt1A 207 9.815 2f6rA 281 11.16 1zm7A 230 11.17 1n3bA 216 11.53 c.37.1.1 79959 2iyvA 184 11.66 c.37.1.2 137812 1gtvA 214 11.75 c.37.1.1 70537 2yvuA 186 12.60 1gky 187 12.65 1ckeA 227 12.69 c.37.1.1 31846 1vhtA 218 12.87 c.37.1.1 100700 1p3jA 217 13.47 c.37.1.1,g.41.2.1 94022,94023 1knqA 175 14.52 c.37.1.17 72786 2bdtA 189 15.35 c.37.1.25 128344 2pt5A 168 16.55 2g1kA 176 17.29 c.37.1.2 134519 2eu8A 216 18.17 2ga8A 359 18.38 1t3lA 337 19.61 b.34.2.1,c.37.1.1 106358,106359 1p6xA 334 19.74 c.37.1.1 94195 2rgxA 206 20.02 1rkbA 173 21.29 c.37.1.1 111854 1jjvA 206 21.30 c.37.1.1 71698 1nksA 194 21.74 c.37.1.1 31886 1y63A 184 21.94 c.37.1.1 116494 2ax4A 198 22.31 3c8uA 208 23.25 1m7gA 211 24.05 c.37.1.4 78724 1zinA 217 24.52 c.37.1.1,g.41.2.1 31915,45178 1zin 217 24.63 1khtA 192 25.19 c.37.1.1 84401 1e6cA 173 26.12 c.37.1.2 59296 1viaA 175 28.17 c.37.1.2 100754 1zuhA 168 29.36 2pezA 179 29.86 2rhmA 193 32.16 1e4yA 214 34.54 c.37.1.1,g.41.2.1 31901,45181 3crrA 323 38.25 1kjwA 295 38.88 b.34.2.1,c.37.1.1 68643,68644 1t0hB 224 40.50 c.37.1.1 106208 3tmkA 216 47.83 c.37.1.1 31920 1of1A 376 48.91 c.37.1.1 103924 1e2kA 331 50.27 c.37.1.1 31854 1kgdA 180 50.92 c.37.1.1 68582 2qgnA 322 51.38 3be4A 217 53.09 1akyA 220 53.85 c.37.1.1,g.41.2.1 31896,45197 1ly1A 181 59.72 c.37.1.1 74334 1qhiA 366 72.69 c.37.1.1 31860 1kpgA 287 79.04 c.66.1.18 68735 1kagA 173 81.29 c.37.1.2 72249 1cl1A 395 83.34 c.67.1.3 34395