# List of top-scoring protein chains for t2k-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1oe0A 230 0.007816 c.37.1.1 92788 2z0hA 197 0.01392 4tmkA 213 0.02035 c.37.1.1 31930 1nn5A 215 0.02690 c.37.1.1 85892 2pbrA 195 0.03694 5tmpA 213 0.05627 c.37.1.1 31931 2vp4A 230 0.05784 1e9eA 215 0.08029 c.37.1.1 64810 2p67A 341 0.09188 1gtvA 214 0.09405 c.37.1.1 70537 2f1rA 171 0.1278 1ukz 203 0.1394 2pezA 179 0.1618 2ax4A 198 0.1762 1np6A 174 0.2141 c.37.1.10 85954 1akyA 220 0.2160 c.37.1.1,g.41.2.1 31896,45197 1s4qA 228 0.2698 c.37.1.1 98507 1zin 217 0.2701 1z8fA 228 0.2877 1s96A 219 0.2920 c.37.1.1 98740 1p5zB 263 0.2985 c.37.1.1 87815 2yvuA 186 0.3057 3be4A 217 0.3305 1qf9A 194 0.3397 c.37.1.1 31848 1znwA 207 0.3456 c.37.1.1 125412 2an9A 207 0.3915 c.37.1.1 127037 2axpA 173 0.7048 c.37.1.1 127497 2plrA 213 0.7477 1ukzA 203 0.8480 c.37.1.1 31840 1p3jA 217 1.072 c.37.1.1,g.41.2.1 94022,94023 2ccjA 205 1.074 2p5tB 253 1.349 2bwjA 199 1.385 2j41A 207 1.435 3tmkA 216 1.438 c.37.1.1 31920 2qorA 204 1.441 1gky 187 1.483 2ak3A 226 1.530 c.37.1.1,g.41.2.1 31892,45193 1ex7A 186 1.557 c.37.1.1 59537 2gzaA 361 1.677 1xjcA 169 1.792 c.37.1.10 115387 2rhmA 193 1.871 1zm7A 230 1.940 1rz3A 201 1.957 c.37.1.6 98132 1ak2A 233 2.018 c.37.1.1,g.41.2.1 31894,45195 1p9rA 418 2.053 c.37.1.11 94399 2qm8A 337 2.652 1kdoA 227 2.800 c.37.1.1 68478 1z6gA 218 2.916 2oap1 511 3.273 1e4yA 214 3.444 c.37.1.1,g.41.2.1 31901,45181 2ff7A 247 3.472 c.37.1.12 133377 2pmkA 243 3.945 2cbzA 237 4.418 2c95A 196 4.962 1d6jA 211 5.138 c.37.1.4 31940 2eu8A 216 5.204 1j8mF 297 5.221 a.24.13.1,c.37.1.10 62742,62743 1fj2A 232 5.803 c.69.1.14 34720 2bdtA 189 5.861 c.37.1.25 128344 2q3fA 181 6.032 1kagA 173 6.109 c.37.1.2 72249 1zinA 217 6.410 c.37.1.1,g.41.2.1 31915,45178 1x6vA 630 7.105 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 1m7gA 211 7.378 c.37.1.4 78724 3cnyA 301 7.657 2j00I 128 8.288 d.14.1.1 137847 1vmaA 306 8.458 a.24.13.1,c.37.1.10 108887,108888 1kgdA 180 8.849 c.37.1.1 68582 1nksA 194 8.918 c.37.1.1 31886 2vqeI 128 9.498 1qhxA 178 10.14 c.37.1.3 31936 3b9qA 302 10.15 1g6oA 330 10.73 c.37.1.11 32430 1p0fA 373 10.95 b.35.1.2,c.2.1.1 87642,87643 2qt1A 207 11.06 2ixeA 271 11.08 2qy9A 309 11.34 1bif 469 12.13 2uubI 128 12.27 1ho1A 242 12.91 c.1.24.1 61097 1qhsA 178 13.25 c.37.1.3 31938 1ji0A 240 13.94 c.37.1.12 71665 1axeA 374 14.55 b.35.1.2,c.2.1.1 24681,29697 1kngA 156 14.71 c.47.1.10 72777 3c8uA 208 14.91 3bifA 468 15.29 c.37.1.7,c.60.1.4 31962,34008 1khtA 192 16.35 c.37.1.1 84401 2ipxA 233 16.95 2pt7A 330 17.29 1zu4A 320 17.68 1ckeA 227 17.72 c.37.1.1 31846 2cdnA 201 17.78 c.37.1.1 130289 1sgwA 214 18.12 c.37.1.12 105541 1uxoA 192 18.32 c.69.1.31 108121 2qxlA 658 18.42 1ng1 294 18.90 1v73A 342 18.93 1m5wA 243 19.39 c.1.24.1 84836 1gz0A 253 20.22 c.116.1.1,d.79.3.3 76391,76392 1axgA 374 20.62 b.35.1.2,c.2.1.1 24691,29707 1t9hA 307 21.24 b.40.4.5,c.37.1.8 112358,112359 2pzeA 229 21.44 1fl9A 161 21.52 c.37.1.18 70137 1a71A 374 21.73 b.35.1.2,c.2.1.1 24673,29689 1yrbA 262 22.56 c.37.1.10 123915 1dseA 292 23.20 a.93.1.1 59130 1zd8A 227 23.29 2eyuA 261 24.42 1e69B 322 25.41 c.37.1.12 32377 1mnaA 298 25.93 c.69.1.22 79322 1n8kA 374 26.51 b.35.1.2,c.2.1.1 80298,80299 2og2A 359 27.32 1ee2A 373 27.83 b.35.1.2,c.2.1.1 24663,29679 1bifA 469 28.09 c.37.1.7,c.60.1.4 31961,34003 1ggvA 232 28.69 c.69.1.9 34683 1htwA 158 28.91 c.37.1.18 71083 2nq2C 253 30.10 1ufwA 95 30.13 d.58.7.1 99358 1uj2A 252 30.31 c.37.1.6 99452 2ga8A 359 30.49 1ls1A 295 31.81 a.24.13.1,c.37.1.10 78170,78171 1f2tA 149 32.32 c.37.1.12 32373 1in4A 334 32.38 a.4.5.11,c.37.1.20 62597,62598 1rkbA 173 32.90 c.37.1.1 111854 1ltqA 301 34.44 c.108.1.9,c.37.1.1 78208,78209 1yqtA 538 35.50 1b0uA 262 36.56 c.37.1.12 32370 1g6hA 257 37.97 c.37.1.12 60318 1ituA 369 38.06 c.1.9.7 71423 2fp8A 322 38.56 1ntvA 152 40.86 b.55.1.2 86168 1esmA 316 41.05 c.37.1.6 31953 1viaA 175 41.38 c.37.1.2 100754 1j8yF 297 43.34 a.24.13.1,c.37.1.10 62747,62748 2bbsA 290 43.35 1knqA 175 44.36 c.37.1.17 72786 1oxsC 353 44.53 b.40.6.3,c.37.1.12 87519,87520 1oxxK 353 44.65 b.40.6.3,c.37.1.12 93715,93716 1xmiA 291 45.51 c.37.1.12 115489 1xbtA 193 45.61 c.37.1.24,g.39.1.14 115080,115081 1kezA 300 46.14 c.69.1.22 68546 2jrnA 163 46.35 1e9rA 437 48.46 c.37.1.11 64827 1a6sA 87 48.83 a.61.1.4 18134 1ugpB 226 49.23 b.34.4.4 107832 1r0wA 286 50.21 c.37.1.12 96754 2pblA 262 50.32 2gk6A 624 51.32 1wl7A 312 51.77 b.67.2.1 120996 2b4uA 335 52.03 1tq6A 413 52.38 c.37.1.8 107202 1vplA 256 52.53 c.37.1.12 113966 2ohxA 374 53.07 b.35.1.2,c.2.1.1 24669,29685 1din 236 53.12 1jj7A 260 53.20 c.37.1.12 63114 1ru0A 105 54.01 d.74.1.1 111937 1l2tA 235 55.24 c.37.1.12 73514 2k3aA 155 56.72 1ordA 730 58.39 c.23.1.4,c.67.1.5,d.125.1.1 31274,34503,41124 1w9iA 770 58.90 2d2eA 250 59.10 1z47A 355 60.20 2bm5A 186 60.55 b.80.8.1 128765 1u24A 337 60.62 c.45.1.4 112968 1gajA 257 61.00 c.37.1.12 60416 1je5A 206 63.02 b.40.4.7 62909 2bonA 332 63.27 2pcjA 224 65.85 1h1nA 305 65.91 c.1.8.3 70855 1t71A 281 67.16 d.159.1.9 112283 1rcf 169 69.27 1gvnB 287 71.62 c.37.1.21 76354 2p8bA 369 73.46 1g291 372 74.43 1b8aA 438 74.81 b.40.4.1,d.104.1.1 25244,40765 2pjzA 263 77.23 2o2gA 223 78.60 1mwyA 73 79.35 d.58.17.1 79616 1ewsA 32 80.29 g.9.1.1 59534 2r8bA 251 80.69 2dj6A 115 82.06 2g09A 297 82.33 2jbwA 386 82.44 2h0uA 217 82.85 2pziA 681 83.26 1ly1A 181 83.30 c.37.1.1 74334 1xrjA 261 85.37 c.37.1.6 122256 2dk7A 73 86.91 1ls6A 295 87.45 c.37.1.5 91115 1jfrA 262 87.59 c.69.1.16 34724 1pbuA 162 88.60 d.58.46.1 88030