# List of top-scoring protein chains for t2k-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1oe0A 230 0.05895 c.37.1.1 92788 2z0hA 197 0.1188 2vp4A 230 0.3346 2pbrA 195 0.6491 5tmpA 213 0.6628 c.37.1.1 31931 1gtvA 214 0.7902 c.37.1.1 70537 2p67A 341 0.9158 1nn5A 215 1.028 c.37.1.1 85892 2axpA 173 1.155 c.37.1.1 127497 1s4qA 228 1.353 c.37.1.1 98507 2an9A 207 1.362 c.37.1.1 127037 1z8fA 228 1.463 1ukz 203 1.525 1zm7A 230 1.575 1s96A 219 1.593 c.37.1.1 98740 2ax4A 198 1.719 2pezA 179 1.917 1e9eA 215 2.162 c.37.1.1 64810 1znwA 207 2.201 c.37.1.1 125412 2plrA 213 2.238 4tmkA 213 2.326 c.37.1.1 31930 2ccjA 205 2.568 2j41A 207 2.615 1p9rA 418 3.072 c.37.1.11 94399 1np6A 174 3.123 c.37.1.10 85954 2p5tB 253 3.123 2f1rA 171 3.721 1p5zB 263 3.740 c.37.1.1 87815 1ex7A 186 4.165 c.37.1.1 59537 1gky 187 4.285 1qf9A 194 4.456 c.37.1.1 31848 1ukzA 203 5.077 c.37.1.1 31840 1akyA 220 5.124 c.37.1.1,g.41.2.1 31896,45197 1zin 217 5.227 2bwjA 199 5.535 1kagA 173 5.804 c.37.1.2 72249 2qorA 204 6.427 2gzaA 361 6.803 3tmkA 216 7.186 c.37.1.1 31920 1rz3A 201 7.371 c.37.1.6 98132 1qhxA 178 8.879 c.37.1.3 31936 2bdtA 189 9.286 c.37.1.25 128344 2yvuA 186 10.42 3be4A 217 10.51 2ff7A 247 12.00 c.37.1.12 133377 2ak3A 226 12.07 c.37.1.1,g.41.2.1 31892,45193 1p3jA 217 12.20 c.37.1.1,g.41.2.1 94022,94023 1qhsA 178 12.29 c.37.1.3 31938 1kdoA 227 14.88 c.37.1.1 68478 1ckeA 227 16.76 c.37.1.1 31846 2cbzA 237 16.80 2q3fA 181 16.86 2rhmA 193 16.86 2pmkA 243 17.38 1kgdA 180 17.87 c.37.1.1 68582 2h8lA 252 17.88 1ak2A 233 18.19 c.37.1.1,g.41.2.1 31894,45195 1bouA 139 18.55 a.88.1.1 18521 1kngA 156 18.85 c.47.1.10 72777 2oap1 511 19.13 2ixeA 271 19.59 2qm8A 337 19.62 1fj2A 232 20.06 c.69.1.14 34720 1g6oA 330 23.20 c.37.1.11 32430 1xjcA 169 23.25 c.37.1.10 115387 1njgA 250 24.14 c.37.1.20 85785 1nksA 194 24.24 c.37.1.1 31886 2c95A 196 25.62 1z6gA 218 27.46 2cdnA 201 28.30 c.37.1.1 130289 2qy9A 309 28.49 1sgwA 214 28.49 c.37.1.12 105541 2qt1A 207 29.50 1vmaA 306 29.64 a.24.13.1,c.37.1.10 108887,108888 1x6vA 630 30.30 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 1yrbA 262 30.39 c.37.1.10 123915 1e4yA 214 30.95 c.37.1.1,g.41.2.1 31901,45181 3cnyA 301 33.94 1in4A 334 34.45 a.4.5.11,c.37.1.20 62597,62598 1htwA 158 37.36 c.37.1.18 71083 1zinA 217 37.81 c.37.1.1,g.41.2.1 31915,45178 1e69B 322 38.20 c.37.1.12 32377 1ji0A 240 38.83 c.37.1.12 71665 1zu4A 320 39.85 1t9hA 307 41.88 b.40.4.5,c.37.1.8 112358,112359 2pt7A 330 45.83 2nq2C 253 47.20 3b9qA 302 47.40 2eu8A 216 48.74 1fl9A 161 49.85 c.37.1.18 70137 1bhgA 613 50.71 b.1.4.1,b.18.1.5,c.1.8.3 22161,23766,28889 1knqA 175 51.14 c.37.1.17 72786 1viaA 175 51.64 c.37.1.2 100754 2obaA 138 51.67 1rkbA 173 52.01 c.37.1.1 111854 1gajA 257 57.14 c.37.1.12 60416 1khtA 192 59.07 c.37.1.1 84401 2h0uA 217 60.82 2pzeA 229 63.60 1d6jA 211 63.71 c.37.1.4 31940 1jj7A 260 64.56 c.37.1.12 63114 1bif 469 65.66 1ho1A 242 66.79 c.1.24.1 61097 2qi9C 249 67.22 2dk7A 73 67.91 2vqeI 128 68.92 1zd8A 227 68.96 1f2tA 149 69.31 c.37.1.12 32373 3c8uA 208 73.10 1l2tA 235 75.51 c.37.1.12 73514 1g6hA 257 75.99 c.37.1.12 60318 1ordA 730 78.20 c.23.1.4,c.67.1.5,d.125.1.1 31274,34503,41124 2pjuA 225 80.64 2fp8A 322 81.11 1sq5A 308 82.76 c.37.1.6 105882 1kezA 300 83.68 c.69.1.22 68546 1rcf 169 85.22 2og2A 359 85.27 2eyuA 261 85.62 1y63A 184 87.93 c.37.1.1 116494 1ye8A 178 89.20 c.37.1.11 123010