# List of top-scoring protein chains for t2k-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1oe0A 230 0.03905 c.37.1.1 92788 2z0hA 197 0.09416 2vp4A 230 0.1966 1ukz 203 0.4185 2p67A 341 0.4919 5tmpA 213 0.5770 c.37.1.1 31931 1gtvA 214 0.6655 c.37.1.1 70537 2an9A 207 0.6659 c.37.1.1 127037 2pbrA 195 0.6964 1nn5A 215 0.7163 c.37.1.1 85892 1s96A 219 0.9487 c.37.1.1 98740 2axpA 173 0.9509 c.37.1.1 127497 1s4qA 228 1.008 c.37.1.1 98507 1z8fA 228 1.030 1zm7A 230 1.039 4tmkA 213 1.387 c.37.1.1 31930 1ukzA 203 1.449 c.37.1.1 31840 1e9eA 215 1.510 c.37.1.1 64810 2ax4A 198 1.585 2pezA 179 1.619 1znwA 207 1.750 c.37.1.1 125412 2bwjA 199 1.812 2j41A 207 1.894 2plrA 213 2.038 1np6A 174 2.378 c.37.1.10 85954 1p9rA 418 2.700 c.37.1.11 94399 1ex7A 186 2.774 c.37.1.1 59537 2p5tB 253 2.938 1gky 187 2.987 2f1rA 171 3.168 2ccjA 205 3.246 1qf9A 194 3.257 c.37.1.1 31848 1zin 217 3.441 2qorA 204 3.788 2yvuA 186 4.894 1p5zB 263 5.688 c.37.1.1 87815 2gzaA 361 6.162 3tmkA 216 6.228 c.37.1.1 31920 1qhxA 178 6.743 c.37.1.3 31936 1rz3A 201 6.989 c.37.1.6 98132 2bdtA 189 7.340 c.37.1.25 128344 1akyA 220 7.503 c.37.1.1,g.41.2.1 31896,45197 2ff7A 247 8.681 c.37.1.12 133377 2ak3A 226 8.828 c.37.1.1,g.41.2.1 31892,45193 2cbzA 237 9.365 1qhsA 178 9.578 c.37.1.3 31938 1kdoA 227 9.622 c.37.1.1 68478 2c95A 196 9.647 3be4A 217 9.687 1nksA 194 9.96 c.37.1.1 31886 2pmkA 243 10.75 1kagA 173 10.96 c.37.1.2 72249 2q3fA 181 11.82 1njgA 250 12.99 c.37.1.20 85785 2ixeA 271 13.52 2qm8A 337 13.94 2oap1 511 14.30 1e4yA 214 14.33 c.37.1.1,g.41.2.1 31901,45181 1ckeA 227 14.79 c.37.1.1 31846 2rhmA 193 14.81 1kgdA 180 15.26 c.37.1.1 68582 1p3jA 217 15.26 c.37.1.1,g.41.2.1 94022,94023 1khtA 192 16.87 c.37.1.1 84401 1kngA 156 17.27 c.47.1.10 72777 1z6gA 218 17.54 2h8lA 252 20.01 2qy9A 309 20.18 1ji0A 240 20.48 c.37.1.12 71665 1ak2A 233 21.02 c.37.1.1,g.41.2.1 31894,45195 1yrbA 262 21.06 c.37.1.10 123915 1vmaA 306 22.07 a.24.13.1,c.37.1.10 108887,108888 1xjcA 169 22.45 c.37.1.10 115387 1htwA 158 23.44 c.37.1.18 71083 1sgwA 214 24.68 c.37.1.12 105541 1g6oA 330 24.92 c.37.1.11 32430 1zu4A 320 25.12 1e69B 322 25.17 c.37.1.12 32377 2qt1A 207 26.15 1fj2A 232 27.92 c.69.1.14 34720 1x6vA 630 28.23 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 1in4A 334 29.78 a.4.5.11,c.37.1.20 62597,62598 1t9hA 307 30.42 b.40.4.5,c.37.1.8 112358,112359 2cdnA 201 30.54 c.37.1.1 130289 3b9qA 302 32.16 1rkbA 173 32.65 c.37.1.1 111854 1fl9A 161 32.96 c.37.1.18 70137 1zinA 217 33.93 c.37.1.1,g.41.2.1 31915,45178 2nq2C 253 34.27 2pzeA 229 36.26 1zd8A 227 36.83 1knqA 175 37.64 c.37.1.17 72786 2pt7A 330 38.39 1gajA 257 41.80 c.37.1.12 60416 2b8wA 328 42.25 1jj7A 260 42.32 c.37.1.12 63114 3cnyA 301 44.12 1bhgA 613 44.45 b.1.4.1,b.18.1.5,c.1.8.3 22161,23766,28889 1g6hA 257 44.73 c.37.1.12 60318 2eu8A 216 44.92 1d6jA 211 45.03 c.37.1.4 31940 1viaA 175 45.83 c.37.1.2 100754 1l2tA 235 46.07 c.37.1.12 73514 2og2A 359 47.57 1f2tA 149 47.84 c.37.1.12 32373 2qi9C 249 48.31 3c8uA 208 54.14 1yqtA 538 56.11 1g291 372 58.66 1ho1A 242 58.85 c.1.24.1 61097 1rcf 169 60.97 2d2eA 250 62.20 1vplA 256 62.28 c.37.1.12 113966 2eyuA 261 62.30 1uj2A 252 62.86 c.37.1.6 99452 1oxxK 353 63.41 b.40.6.3,c.37.1.12 93715,93716 1sq5A 308 64.24 c.37.1.6 105882 2vqeI 128 64.41 1ye8A 178 65.38 c.37.1.11 123010 1z47A 355 66.18 1oxsC 353 66.68 b.40.6.3,c.37.1.12 87519,87520 1ki9A 192 67.07 c.37.1.1 84404 1r0wA 286 68.17 c.37.1.12 96754 2fp8A 322 68.31 1bif 469 69.01 1esmA 316 70.59 c.37.1.6 31953 1kezA 300 73.55 c.69.1.22 68546 3bfxA 296 73.60 1bouA 139 75.33 a.88.1.1 18521 2bbsA 290 75.84 1b0uA 262 76.42 c.37.1.12 32370 2obaA 138 76.73 1m4yA 171 77.91 d.153.1.4 84802 1ltqA 301 78.55 c.108.1.9,c.37.1.1 78208,78209 2h0uA 217 79.05 1l7vC 249 80.00 c.37.1.12 73674 1m7gA 211 80.01 c.37.1.4 78724 1e9rA 437 81.21 c.37.1.11 64827 2gwhA 298 81.43 1y63A 184 82.22 c.37.1.1 116494 1j8mF 297 83.72 a.24.13.1,c.37.1.10 62742,62743 1ly1A 181 85.07 c.37.1.1 74334 2uubI 128 85.84 3bljA 221 88.78 2dk7A 73 88.93 2pjzA 263 89.53