# List of top-scoring protein chains for t2k-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2axpA 173 0.1103 c.37.1.1 127497 1oe0A 230 0.1123 c.37.1.1 92788 4tmkA 213 0.2183 c.37.1.1 31930 2z0hA 197 0.3228 1s4qA 228 0.5554 c.37.1.1 98507 2vp4A 230 0.5836 5tmpA 213 1.083 c.37.1.1 31931 1znwA 207 1.215 c.37.1.1 125412 1gtvA 214 1.534 c.37.1.1 70537 1nn5A 215 1.557 c.37.1.1 85892 2rhmA 193 1.615 1s96A 219 1.784 c.37.1.1 98740 2pbrA 195 2.106 1zm7A 230 2.501 1z6gA 218 2.820 2bwjA 199 3.187 1e9eA 215 3.206 c.37.1.1 64810 2plrA 213 3.472 2o8nA 265 3.847 1e4yA 214 4.197 c.37.1.1,g.41.2.1 31901,45181 1gky 187 4.653 1p5zB 263 4.734 c.37.1.1 87815 2qorA 204 4.972 1z8fA 228 5.056 1dseA 292 5.538 a.93.1.1 59130 1ex7A 186 5.700 c.37.1.1 59537 2j41A 207 5.861 3tmkA 216 6.060 c.37.1.1 31920 2ccjA 205 6.198 1crkA 380 6.482 a.83.1.1,d.128.1.2 18458,41193 2cf5A 357 6.889 2yvuA 186 7.051 1auoA 218 7.372 c.69.1.14 34716 2pezA 179 7.669 1ukz 203 7.930 1rz3A 201 8.986 c.37.1.6 98132 2h0rA 216 9.081 3bmvA 683 9.156 2ax4A 198 9.640 2an9A 207 9.700 c.37.1.1 127037 2ff7A 247 9.707 c.37.1.12 133377 1jqbA 351 9.95 b.35.1.2,c.2.1.1 77151,77152 1qh0A 295 10.07 b.43.4.2,c.25.1.1 68891,68892 3be4A 217 11.02 2j13A 247 11.11 c.6.2.3 137934 1qf9A 194 11.31 c.37.1.1 31848 1vplA 256 12.30 c.37.1.12 113966 3b9qA 302 12.41 1axeA 374 12.64 b.35.1.2,c.2.1.1 24681,29697 2qm8A 337 13.04 1n8kA 374 14.38 b.35.1.2,c.2.1.1 80298,80299 1ndh 272 14.48 1umpA 631 14.51 a.102.4.2,a.102.4.2 99619,99620 2eu8A 216 14.76 1qhsA 178 14.88 c.37.1.3 31938 1kngA 156 14.91 c.47.1.10 72777 1rkbA 173 15.60 c.37.1.1 111854 1kagA 173 16.35 c.37.1.2 72249 2jmhA 119 17.28 2q3fA 181 17.36 1a71A 374 17.94 b.35.1.2,c.2.1.1 24673,29689 1h1nA 305 18.07 c.1.8.3 70855 2qt1A 207 18.30 2f1rA 171 18.60 1x6vA 630 19.42 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 2j5wA 1065 19.81 b.6.1.3,b.6.1.3,b.6.1.3,b.6.1.3,b.6.1.3 138067,138068,138069,138070,138071 2p67A 341 21.06 2pmkA 243 21.74 1ms9A 648 21.78 b.29.1.15,b.68.1.1 85088,85089 2bdtA 189 21.92 c.37.1.25 128344 2oap1 511 22.33 3bblA 287 22.74 1wb9A 800 22.76 a.113.1.1,c.37.1.12,c.55.6.1,d.75.2.1 120833,120834,120835,120836 1yaaA 412 23.57 c.67.1.1 34280 1g6oA 330 23.77 c.37.1.11 32430 1zin 217 25.48 1y63A 184 29.30 c.37.1.1 116494 1kgdA 180 31.91 c.37.1.1 68582 1ukzA 203 32.82 c.37.1.1 31840 1fj2A 232 33.10 c.69.1.14 34720 2ak3A 226 34.19 c.37.1.1,g.41.2.1 31892,45193 1gvmA 136 34.66 b.109.1.1 70612 1jdpA 441 36.01 c.93.1.1 62906 2eyuA 261 36.16 2gzaA 361 36.47 2akaB 299 36.47 c.37.1.8 126914 1b0uA 262 36.83 c.37.1.12 32370 1d0cA 444 37.64 d.174.1.1 64769 2cmuA 342 37.81 2og2A 359 39.17 1mnaA 298 39.67 c.69.1.22 79322 9gafA 295 39.74 d.153.1.5 42008 2ptzA 432 40.02 3bifA 468 40.03 c.37.1.7,c.60.1.4 31962,34008 2rb7A 364 40.09 2fp8A 322 40.70 2fcwA 109 41.62 a.13.1.1 133288 1o7fA 469 41.90 a.4.5.31,b.82.3.2,b.82.3.2 81131,81132,81133 1xjcA 169 41.95 c.37.1.10 115387 1hniA 558 42.22 c.55.3.1,e.8.1.2 33586,43044 1gvnB 287 42.96 c.37.1.21 76354 2eplX 627 44.12 1r1hA 696 45.09 d.92.1.4 104756 2c95A 196 45.29 1sgwA 214 45.59 c.37.1.12 105541 1axgA 374 47.00 b.35.1.2,c.2.1.1 24691,29707 1akyA 220 47.55 c.37.1.1,g.41.2.1 31896,45197 1fwrA 213 48.29 c.1.10.1 29164 2qu8A 228 48.52 1juhA 350 48.86 b.82.1.5 71884 1ogiA 303 49.47 b.43.4.2,c.25.1.1 92914,92915 1kdoA 227 49.60 c.37.1.1 68478 2jamA 304 49.76 1miwA 404 52.34 a.173.1.1,d.218.1.4 79162,79163 1htwA 158 55.51 c.37.1.18 71083 2qgnA 322 56.25 1qhxA 178 57.06 c.37.1.3 31936 1p3jA 217 57.26 c.37.1.1,g.41.2.1 94022,94023 1nbaA 264 57.38 c.33.1.3 31753 2b8wA 328 57.73 2p51A 333 58.27 1a1vA 476 60.37 c.37.1.14,c.37.1.14 32467,32468 2pt5A 168 63.59 2hpkA 208 65.34 1ee2A 373 66.41 b.35.1.2,c.2.1.1 24663,29679 2z06A 252 66.50 1yrbA 262 69.27 c.37.1.10 123915 1p9rA 418 69.44 c.37.1.11 94399 2v26A 784 72.76 1xx1A 285 74.15 1np6A 174 74.31 c.37.1.10 85954 1uj2A 252 74.43 c.37.1.6 99452 1u24A 337 75.00 c.45.1.4 112968 1xbtA 193 75.89 c.37.1.24,g.39.1.14 115080,115081 2d2eA 250 76.43 1oewA 329 76.53 b.50.1.2 86924 1knqA 175 78.92 c.37.1.17 72786 1obbA 480 82.59 c.2.1.5,d.162.1.2 86760,86761 2b81A 323 83.75 2qtsA 438 84.32 1l2tA 235 85.36 c.37.1.12 73514 1xrjA 261 85.59 c.37.1.6 122256 1szqA 483 85.67 e.44.1.1 99045 2chuA 296 86.15 c.92.2.4 130485 2b8nA 429 87.47 c.118.1.1 128093 2jrnA 163 87.78 2b7kA 200 88.27 c.47.1.10 128042 2rgyA 290 88.40 1pamA 686 88.64 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21846,22515,27753,28740