# List of top-scoring protein chains for t2k-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2an9A 207 0.3460 c.37.1.1 127037 1gky 187 0.6555 1ex7A 186 0.7130 c.37.1.1 59537 1s96A 219 1.065 c.37.1.1 98740 1s4qA 228 1.103 c.37.1.1 98507 4tmkA 213 1.130 c.37.1.1 31930 2qorA 204 1.460 1xrjA 261 1.506 c.37.1.6 122256 1z8fA 228 1.638 1z6gA 218 1.800 1uj2A 252 2.130 c.37.1.6 99452 2qt1A 207 2.360 1znwA 207 2.409 c.37.1.1 125412 5tmpA 213 2.815 c.37.1.1 31931 2plrA 213 3.034 1y63A 184 3.244 c.37.1.1 116494 2ccjA 205 3.772 2pbrA 195 4.070 1oe0A 230 4.951 c.37.1.1 92788 1p5zB 263 5.674 c.37.1.1 87815 2yvuA 186 5.961 1rkbA 173 6.231 c.37.1.1 111854 2axpA 173 6.547 c.37.1.1 127497 1t0hB 224 6.730 c.37.1.1 106208 2bwjA 199 6.901 1knqA 175 7.258 c.37.1.17 72786 1kdoA 227 7.481 c.37.1.1 68478 2bdtA 189 9.107 c.37.1.25 128344 2ax4A 198 10.13 1ckeA 227 10.68 c.37.1.1 31846 2rhmA 193 10.94 1e9eA 215 11.98 c.37.1.1 64810 1ki9A 192 12.03 c.37.1.1 84404 1jxmA 301 12.04 b.34.2.1,c.37.1.1 67420,67421 1qf9A 194 12.22 c.37.1.1 31848 1t3lA 337 12.79 b.34.2.1,c.37.1.1 106358,106359 2pt5A 168 14.12 2pezA 179 14.46 1e6cA 173 15.56 c.37.1.2 59296 1khtA 192 21.61 c.37.1.1 84401 2c95A 196 23.98 2vp4A 230 24.50 1ak2A 233 25.54 c.37.1.1,g.41.2.1 31894,45195 1n3bA 216 26.18 c.37.1.1 79959 1zm7A 230 26.27 2j41A 207 26.44 1nksA 194 26.67 c.37.1.1 31886 2o14A 375 26.83 1ukzA 203 27.13 c.37.1.1 31840 1ukz 203 33.70 1zbsA 291 36.01 c.55.1.5,c.55.1.5 124870,124871 1sviA 195 37.59 c.37.1.8 106048 2ak3A 226 38.10 c.37.1.1,g.41.2.1 31892,45193 1r3dA 264 38.82 c.69.1.35 111680 2bmeA 186 38.91 c.37.1.8 128790 2bh1A 250 39.18 c.55.1.11,c.55.1.11 128506,128507 2ftwA 521 39.50 b.92.1.3,c.1.9.6 134083,134084 1zin 217 43.58 1kagA 173 45.64 c.37.1.2 72249 1kpgA 287 46.36 c.66.1.18 68735 1p3jA 217 46.38 c.37.1.1,g.41.2.1 94022,94023 1kgdA 180 51.28 c.37.1.1 68582 1qhxA 178 51.30 c.37.1.3 31936 1o6dA 163 55.07 c.116.1.3 92567 2cdnA 201 57.70 c.37.1.1 130289 2dwuA 276 58.55 2ew2A 316 58.64 2z0hA 197 60.63 1nn5A 215 61.41 c.37.1.1 85892 2rgxA 206 62.82 1wx1A 335 64.36 1x1rA 178 64.50 c.37.1.8 121595 1w4xA 542 65.14 c.3.1.5,c.3.1.5 109171,109172 1gtmA 419 66.00 c.2.1.7,c.58.1.1 30223,33871 1viaA 175 69.53 c.37.1.2 100754 1g3qA 237 71.17 c.37.1.10 60237 1hv9A 456 71.68 b.81.1.4,c.68.1.5 28060,34518 1oivA 191 72.00 c.37.1.8 93076 1gkpA 458 75.80 b.92.1.3,c.1.9.6 70231,70232 1zinA 217 76.10 c.37.1.1,g.41.2.1 31915,45178 2nwqA 272 76.57 3cerA 343 78.08 1eqnA 321 79.23 e.13.1.1 43256 2ew1A 201 79.64 c.37.1.8 132446 1zd8A 227 79.82 1j33A 335 79.95 c.39.1.1 77069 1kjwA 295 80.55 b.34.2.1,c.37.1.1 68643,68644 1d0vA 356 81.57 c.39.1.1 32476 1akeA 214 82.15 c.37.1.1,g.41.2.1 31905,45185 2g1kA 176 82.28 c.37.1.2 134519 1kid 203 82.61 2gh1A 301 82.99 c.66.1.49 135170 2fk8A 318 83.01 c.66.1.18 133648 2ce2X 166 83.98 1kaoA 167 84.01 c.37.1.8 32014 1vg8A 207 84.64 c.37.1.8 108606 2ebdA 309 85.19 3cs3A 277 87.25 1umdA 367 87.65 c.36.1.11 99599