# List of top-scoring protein chains for t06-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1gky 187 1.05e-06 1znwA 207 1.92e-06 c.37.1.1 125412 1kjwA 295 2.05e-06 b.34.2.1,c.37.1.1 68643,68644 2qorA 204 4.42e-06 2j41A 207 4.58e-06 1ex7A 186 4.81e-06 c.37.1.1 59537 1kgdA 180 5.44e-06 c.37.1.1 68582 2pbrA 195 2.95e-05 4tmkA 213 5.14e-05 c.37.1.1 31930 1s96A 219 7.36e-05 c.37.1.1 98740 2an9A 207 8.43e-05 c.37.1.1 127037 1ukzA 203 0.000221 c.37.1.1 31840 2z0hA 197 0.000243 2c95A 196 0.000297 1ukz 203 0.000313 2ccjA 205 0.000316 1p6xA 334 0.000399 c.37.1.1 94195 1gtvA 214 0.000432 c.37.1.1 70537 1qf9A 194 0.000469 c.37.1.1 31848 1of1A 376 0.000600 c.37.1.1 103924 2bwjA 199 0.000721 1p5zB 263 0.000790 c.37.1.1 87815 1e2kA 331 0.000797 c.37.1.1 31854 1t0hB 224 0.001325 c.37.1.1 106208 1ki9A 192 0.001662 c.37.1.1 84404 2vp4A 230 0.001784 2qt1A 207 0.001818 1zm7A 230 0.002174 2cdnA 201 0.002590 c.37.1.1 130289 2plrA 213 0.002594 1akyA 220 0.003866 c.37.1.1,g.41.2.1 31896,45197 1khtA 192 0.004264 c.37.1.1 84401 2axpA 173 0.004961 c.37.1.1 127497 1vhtA 218 0.004989 c.37.1.1 100700 2ak3A 226 0.005006 c.37.1.1,g.41.2.1 31892,45193 2f6rA 281 0.005282 2rgxA 206 0.005323 1y63A 184 0.005343 c.37.1.1 116494 1zin 217 0.007013 3be4A 217 0.007991 2bdtA 189 0.008911 c.37.1.25 128344 1ak2A 233 0.008995 c.37.1.1,g.41.2.1 31894,45195 1e4yA 214 0.01099 c.37.1.1,g.41.2.1 31901,45181 2eu8A 216 0.01193 1nn5A 215 0.01293 c.37.1.1 85892 1kdoA 227 0.01353 c.37.1.1 68478 1zd8A 227 0.01399 1zinA 217 0.01414 c.37.1.1,g.41.2.1 31915,45178 1qhxA 178 0.01529 c.37.1.3 31936 1uj2A 252 0.01855 c.37.1.6 99452 1jjvA 206 0.02018 c.37.1.1 71698 2rhmA 193 0.02196 1ckeA 227 0.02351 c.37.1.1 31846 3tmkA 216 0.02395 c.37.1.1 31920 1viaA 175 0.02724 c.37.1.2 100754 1e6cA 173 0.02788 c.37.1.2 59296 2pt5A 168 0.02970 1xrjA 261 0.03768 c.37.1.6 122256 1knqA 175 0.03892 c.37.1.17 72786 2grjA 192 0.04772 2yvuA 186 0.05168 2pezA 179 0.05312 3c8uA 208 0.05321 2iyvA 184 0.06507 c.37.1.2 137812 1rkbA 173 0.06641 c.37.1.1 111854 2g1kA 176 0.07881 c.37.1.2 134519 1zuhA 168 0.1236 1ltqA 301 0.1963 c.108.1.9,c.37.1.1 78208,78209 3crrA 323 0.2286 2qgnA 322 0.2778 1rz3A 201 0.2800 c.37.1.6 98132 1m7gA 211 0.2950 c.37.1.4 78724 1dekA 241 0.4010 c.37.1.1 31842 1gvnB 287 0.4809 c.37.1.21 76354 1kagA 173 0.4963 c.37.1.2 72249 2ax4A 198 0.5250 1ly1A 181 0.8119 c.37.1.1 74334 1a7jA 290 0.9505 c.37.1.6 31952 2p5tB 253 1.130 1a7j 290 1.224 2f1rA 171 1.407 1xjcA 169 1.527 c.37.1.10 115387 1xx6A 191 1.617 c.37.1.24,g.39.1.14 116139,116140 2orwA 184 1.641 2pzeA 229 1.690 1l2tA 235 1.946 c.37.1.12 73514 1w5tA 412 2.162 a.4.5.11,c.37.1.20 114255,114256 1np6A 174 2.257 c.37.1.10 85954 2pmkA 243 2.952 2cbzA 237 3.802 2ixeA 271 3.856 2pcjA 224 4.360 2ihyA 279 4.446 2nq2C 253 4.596 1g6hA 257 4.783 c.37.1.12 60318 2ze7A 253 4.805 2ff7A 247 4.900 c.37.1.12 133377 1ji0A 240 5.048 c.37.1.12 71665 2d2eA 250 5.076 1lv7A 257 5.382 c.37.1.20 78232 1rj9A 304 5.529 a.24.13.1,c.37.1.10 97553,97554 2bbsA 290 5.686 1yqtA 538 5.721 2qi9C 249 5.862 1sq5A 308 5.904 c.37.1.6 105882 1vplA 256 5.997 c.37.1.12 113966 1xewX 182 6.063 c.37.1.12 115235 1b0uA 262 6.248 c.37.1.12 32370 1in4A 334 6.402 a.4.5.11,c.37.1.20 62597,62598 2fnaA 357 6.436 a.4.5.11,c.37.1.20 133809,133810 2vhjA 331 6.559 1d2nA 272 7.331 c.37.1.20 32428 2gzaA 361 7.962 2ga8A 359 8.205 2p67A 341 8.613 1sxjA 511 8.970 a.80.1.1,c.37.1.20 106081,106082 1sgwA 214 9.223 c.37.1.12 105541 1z47A 355 9.408 2qy9A 309 9.813 1a5tA 334 11.78 a.80.1.1,c.37.1.20 18450,32423 1zu4A 320 11.86 1a5t 334 12.22 2eyuA 261 12.26 2pjzA 263 12.43 2og2A 359 12.52 1fnnA 389 12.75 a.4.5.11,c.37.1.20 16129,32426 2r44A 331 12.96 1g291 372 13.05 1htwA 158 13.39 c.37.1.18 71083 2oap1 511 13.69 1g6oA 330 14.04 c.37.1.11 32430 1bifA 469 14.73 c.37.1.7,c.60.1.4 31961,34003 2it1A 362 15.28 2bekA 257 15.82 1w4rA 195 16.03 2dpxA 174 16.76 1knxA 312 16.83 c.98.2.1,c.91.1.2 77459,77460 2r2aA 199 17.25 2gjsA 176 17.26 c.37.1.8 135287 1g8pA 350 17.56 c.37.1.20 60376 2akaB 299 17.64 c.37.1.8 126914 1mh1A 186 17.67 c.37.1.8 32002 1m7bA 184 18.16 c.37.1.8 74572 1g41A 444 18.59 c.37.1.20 32450 2q3hA 201 18.66 1gl6A 436 19.00 c.37.1.11 70259 1e9rA 437 19.12 c.37.1.11 64827 1wcv1 257 19.41 1nijA 318 19.62 c.37.1.10,d.237.1.1 85741,85742 1w44A 331 19.65 c.37.1.11 114147 1ky3A 182 20.27 c.37.1.8 73193 1in6A 334 20.61 a.4.5.11,c.37.1.20 62601,62602 1u94A 356 21.68 c.37.1.11,d.48.1.1 107743,107744 1h65A 270 23.30 c.37.1.8 65640 1tueA 212 23.35 c.37.1.20 107323 2b8tA 223 23.41 c.37.1.24,g.39.1.14 128109,128110 1tq4A 413 23.56 c.37.1.8 107201 3b9pA 297 23.76 1f2tA 149 24.08 c.37.1.12 32373 2c9oA 456 24.51 1wf3A 301 25.16 c.37.1.8,d.52.3.1 114574,114575 2a5yB 549 26.19 1odfA 290 26.22 c.37.1.6 92782 1zj6A 187 26.23 c.37.1.8 125145 1uxoA 192 26.82 c.69.1.31 108121 2cvhA 220 26.90 1ko7A 314 27.44 c.98.2.1,c.91.1.2 72797,72798 2pt7A 330 28.51 2a5dA 175 28.97 c.37.1.8 126172 2bjvA 265 29.08 3b9qA 302 29.19 1ye8A 178 29.24 c.37.1.11 123010 1bif 469 29.59 1njgA 250 30.78 c.37.1.20 85785 1z08A 170 31.81 c.37.1.8 124303 2rexB 197 31.91 1f6bA 198 32.00 c.37.1.8 64986 2c8vA 288 32.18 c.37.1.10 130128 1ls1A 295 33.50 a.24.13.1,c.37.1.10 78170,78171 2afhE 289 33.85 c.37.1.10 126683 1sxjE 354 36.36 a.80.1.1,c.37.1.20 106089,106090 2gj8A 172 38.42 c.37.1.8 135270 2gcoA 201 38.49 2hf9A 226 38.57 1u9iA 519 38.72 c.37.1.11,c.37.1.11 119637,119638 2dr3A 247 38.84 2i1qA 322 40.02 a.60.4.1,c.37.1.11 136984,136985 1w9iA 770 41.72 1pujA 282 45.59 c.37.1.8 88294 2qgzA 308 46.36 3bfkA 181 46.45 1uptA 171 46.52 c.37.1.8 99767 3bosA 242 47.43 1qhlA 227 47.49 c.37.1.12 32382 1ihuA 589 48.35 c.37.1.10,c.37.1.10 62394,62395 1xd8A 289 49.14 2qm8A 337 49.31 1ufoA 238 49.61 c.69.1.27 99344 2zadA 345 50.49 2qu8A 228 50.62 2bcgY 206 50.66 c.37.1.8 128285 2zejA 184 51.03 1g3qA 237 52.28 c.37.1.10 60237 1tca 317 52.32 1j8mF 297 52.45 a.24.13.1,c.37.1.10 62742,62743 2h17A 181 53.51 2q3fA 181 53.62 1kmqA 184 53.92 c.37.1.8 84412 2v26A 784 53.99 1r8sA 164 55.11 c.37.1.8 97247 1oxxK 353 55.29 b.40.6.3,c.37.1.12 93715,93716 2gk6A 624 57.92 1pjrA 724 59.26 c.37.1.19,c.37.1.19 32391,32392 2bkhA 814 59.31 1jalA 363 59.49 c.37.1.8,d.15.10.2 84138,84139 2qjwA 176 60.83 2g6bA 180 62.16 c.37.1.8 134701 1kshA 186 64.03 c.37.1.8 72914 1z06A 189 64.56 c.37.1.8 124301 2iutA 574 65.51 1o3yA 166 66.15 c.37.1.8 86618 2p65A 187 67.62 3bwdD 182 68.65 2dpyA 438 69.29 1z2aA 168 69.34 c.37.1.8 124374 1x3sA 195 70.49 c.37.1.8 121670 2ozeA 298 73.71 2chgA 226 74.74 1cr1A 296 76.22 c.37.1.11 32286 2oblA 347 76.30 1yzqA 170 76.70 c.37.1.8 124286 2r8rA 228 77.49 1ycdA 243 82.60 2gdjA 264 83.60 c.37.1.11 135018 1xp8A 366 83.74 c.37.1.11,d.48.1.1 115735,115736 2a5jA 191 83.90 c.37.1.8 126175 2pc8A 400 86.22 2j69A 695 88.39