# List of top-scoring protein chains for t06-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1gky 187 2.77e-07 1kjwA 295 3.87e-07 b.34.2.1,c.37.1.1 68643,68644 1znwA 207 4.57e-07 c.37.1.1 125412 1ex7A 186 1.06e-06 c.37.1.1 59537 2qorA 204 1.12e-06 1kgdA 180 2.43e-06 c.37.1.1 68582 2j41A 207 2.50e-06 2pbrA 195 4.54e-06 4tmkA 213 1.47e-05 c.37.1.1 31930 1s96A 219 2.58e-05 c.37.1.1 98740 2an9A 207 2.91e-05 c.37.1.1 127037 1gtvA 214 5.01e-05 c.37.1.1 70537 1p5zB 263 8.28e-05 c.37.1.1 87815 2z0hA 197 9.42e-05 1ukzA 203 9.75e-05 c.37.1.1 31840 2ccjA 205 0.000125 2c95A 196 0.000128 1ukz 203 0.000166 1t0hB 224 0.000176 c.37.1.1 106208 2bwjA 199 0.000209 1p6xA 334 0.000260 c.37.1.1 94195 1qf9A 194 0.000332 c.37.1.1 31848 1of1A 376 0.000389 c.37.1.1 103924 1ki9A 192 0.000399 c.37.1.1 84404 2cdnA 201 0.000617 c.37.1.1 130289 1khtA 192 0.000663 c.37.1.1 84401 1e2kA 331 0.000789 c.37.1.1 31854 2vp4A 230 0.000831 2plrA 213 0.001046 2axpA 173 0.001316 c.37.1.1 127497 2qt1A 207 0.001392 2ak3A 226 0.001657 c.37.1.1,g.41.2.1 31892,45193 1zm7A 230 0.001724 1e4yA 214 0.001766 c.37.1.1,g.41.2.1 31901,45181 1akyA 220 0.002038 c.37.1.1,g.41.2.1 31896,45197 1zin 217 0.002110 1ak2A 233 0.002136 c.37.1.1,g.41.2.1 31894,45195 1vhtA 218 0.002206 c.37.1.1 100700 2rgxA 206 0.002928 1y63A 184 0.002945 c.37.1.1 116494 2f6rA 281 0.003307 3be4A 217 0.003391 2eu8A 216 0.003498 1zd8A 227 0.004214 1e6cA 173 0.004241 c.37.1.2 59296 1nn5A 215 0.004327 c.37.1.1 85892 2bdtA 189 0.005003 c.37.1.25 128344 1qhxA 178 0.005650 c.37.1.3 31936 1uj2A 252 0.005734 c.37.1.6 99452 1jjvA 206 0.007690 c.37.1.1 71698 1zinA 217 0.007942 c.37.1.1,g.41.2.1 31915,45178 2pezA 179 0.008426 2yvuA 186 0.008504 1viaA 175 0.008719 c.37.1.2 100754 3tmkA 216 0.008997 c.37.1.1 31920 2rhmA 193 0.01262 1kdoA 227 0.01389 c.37.1.1 68478 1ckeA 227 0.01529 c.37.1.1 31846 2pt5A 168 0.01628 1knqA 175 0.01693 c.37.1.17 72786 2grjA 192 0.01787 2g1kA 176 0.01949 c.37.1.2 134519 1rkbA 173 0.02011 c.37.1.1 111854 3c8uA 208 0.02068 1xrjA 261 0.02091 c.37.1.6 122256 2iyvA 184 0.02354 c.37.1.2 137812 1ltqA 301 0.04086 c.108.1.9,c.37.1.1 78208,78209 1zuhA 168 0.04834 2ax4A 198 0.1277 1a7jA 290 0.1454 c.37.1.6 31952 2qgnA 322 0.1485 1gvnB 287 0.1538 c.37.1.21 76354 1kagA 173 0.1608 c.37.1.2 72249 1rz3A 201 0.1655 c.37.1.6 98132 1m7gA 211 0.1948 c.37.1.4 78724 3crrA 323 0.1988 1ly1A 181 0.2059 c.37.1.1 74334 2p5tB 253 0.3298 1w5tA 412 0.3701 a.4.5.11,c.37.1.20 114255,114256 1xx6A 191 0.4796 c.37.1.24,g.39.1.14 116139,116140 2f1rA 171 0.5103 1a7j 290 0.5341 1xjcA 169 0.5701 c.37.1.10 115387 1np6A 174 0.6464 c.37.1.10 85954 1dekA 241 0.6521 c.37.1.1 31842 2orwA 184 0.9633 1l2tA 235 1.416 c.37.1.12 73514 2pmkA 243 2.486 2ze7A 253 2.491 2cbzA 237 2.512 2pzeA 229 2.666 1sxjA 511 2.867 a.80.1.1,c.37.1.20 106081,106082 1yqtA 538 2.897 2nq2C 253 3.044 2p67A 341 3.336 1u94A 356 3.368 c.37.1.11,d.48.1.1 107743,107744 1in4A 334 3.618 a.4.5.11,c.37.1.20 62597,62598 1rj9A 304 3.675 a.24.13.1,c.37.1.10 97553,97554 2qy9A 309 3.704 2ixeA 271 3.747 2pcjA 224 3.824 2ff7A 247 3.909 c.37.1.12 133377 1bifA 469 3.977 c.37.1.7,c.60.1.4 31961,34003 2d2eA 250 4.045 1g6oA 330 4.075 c.37.1.11 32430 1in6A 334 4.191 a.4.5.11,c.37.1.20 62601,62602 1g6hA 257 4.200 c.37.1.12 60318 1w4rA 195 4.249 1lv7A 257 4.507 c.37.1.20 78232 1b0uA 262 4.593 c.37.1.12 32370 1fnnA 389 4.655 a.4.5.11,c.37.1.20 16129,32426 1vplA 256 4.736 c.37.1.12 113966 2r44A 331 4.831 2gzaA 361 4.843 1ji0A 240 4.863 c.37.1.12 71665 2ga8A 359 5.061 2bbsA 290 5.086 2eyuA 261 5.541 1d2nA 272 5.637 c.37.1.20 32428 2c8vA 288 5.922 c.37.1.10 130128 2vhjA 331 6.033 2qm8A 337 6.324 2ihyA 279 6.364 1sxjE 354 6.378 a.80.1.1,c.37.1.20 106089,106090 1sgwA 214 6.416 c.37.1.12 105541 2afhE 289 6.552 c.37.1.10 126683 1xewX 182 6.860 c.37.1.12 115235 2og2A 359 6.883 1e9rA 437 7.044 c.37.1.11 64827 2qi9C 249 7.060 1sq5A 308 7.205 c.37.1.6 105882 1bif 469 7.228 2q3hA 201 7.340 1xd8A 289 7.695 2fnaA 357 7.896 a.4.5.11,c.37.1.20 133809,133810 2r2aA 199 8.121 2it1A 362 8.581 2pjzA 263 8.621 1ye8A 178 8.804 c.37.1.11 123010 3b9qA 302 9.088 1m7bA 184 9.135 c.37.1.8 74572 2pt7A 330 9.301 1z47A 355 9.362 1zu4A 320 9.420 2oap1 511 9.572 1mh1A 186 9.692 c.37.1.8 32002 1g291 372 9.805 1a5tA 334 10.81 a.80.1.1,c.37.1.20 18450,32423 1ihuA 589 11.15 c.37.1.10,c.37.1.10 62394,62395 1x6vA 630 11.16 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 2gjsA 176 11.88 c.37.1.8 135287 2hf9A 226 11.93 1gl6A 436 11.97 c.37.1.11 70259 2b8tA 223 12.22 c.37.1.24,g.39.1.14 128109,128110 1ls1A 295 12.34 a.24.13.1,c.37.1.10 78170,78171 1sxjC 340 12.78 a.80.1.1,c.37.1.20 106085,106086 1njgA 250 13.52 c.37.1.20 85785 2akaB 299 14.30 c.37.1.8 126914 1oxxK 353 14.41 b.40.6.3,c.37.1.12 93715,93716 1tueA 212 14.92 c.37.1.20 107323 2dpxA 174 15.02 1a5t 334 15.29 2bekA 257 15.38 1u9iA 519 15.63 c.37.1.11,c.37.1.11 119637,119638 2bjvA 265 15.66 1wcv1 257 16.22 1nijA 318 16.35 c.37.1.10,d.237.1.1 85741,85742 2cvhA 220 16.40 1knxA 312 16.48 c.98.2.1,c.91.1.2 77459,77460 2dr3A 247 16.61 1cp2A 269 16.70 c.37.1.10 32269 1ko7A 314 16.83 c.98.2.1,c.91.1.2 72797,72798 1xp8A 366 16.93 c.37.1.11,d.48.1.1 115735,115736 1tq4A 413 16.93 c.37.1.8 107201 2c9oA 456 17.09 1j8mF 297 18.09 a.24.13.1,c.37.1.10 62742,62743 2a5yB 549 18.12 1ky3A 182 18.12 c.37.1.8 73193 2gxaA 274 19.05 3bs4A 260 20.38 1pujA 282 20.51 c.37.1.8 88294 1g8pA 350 20.79 c.37.1.20 60376 1w44A 331 21.25 c.37.1.11 114147 2i1qA 322 21.67 a.60.4.1,c.37.1.11 136984,136985 1byi 224 22.28 1cr1A 296 22.41 c.37.1.11 32286 2oblA 347 22.85 1z08A 170 24.10 c.37.1.8 124303 1odfA 290 24.43 c.37.1.6 92782 2rexB 197 25.09 1uxoA 192 25.11 c.69.1.31 108121 1tca 317 25.12 1h65A 270 25.68 c.37.1.8 65640 1g41A 444 26.23 c.37.1.20 32450 1htwA 158 26.84 c.37.1.18 71083 1g3qA 237 27.71 c.37.1.10 60237 1nlfA 279 28.37 c.37.1.11 85850 1jbkA 195 29.61 c.37.1.20 71631 1f2tA 149 29.80 c.37.1.12 32373 2a5dA 175 30.63 c.37.1.8 126172 1ionA 243 31.16 c.37.1.10 62633 3bwdD 182 31.36 1pjrA 724 32.14 c.37.1.19,c.37.1.19 32391,32392 2qgzA 308 32.85 2zadA 345 34.01 3bosA 242 34.49 2dpyA 438 34.54 1ycdA 243 34.92 3bfkA 181 35.30 2r79A 283 35.65 2v1xA 591 37.32 1lw7A 365 37.41 c.26.1.3,c.37.1.1 74295,74296 2bcgY 206 37.94 c.37.1.8 128285 2ozeA 298 38.08 2gj8A 172 38.24 c.37.1.8 135270 3b9pA 297 39.34 2rebA 352 40.22 c.37.1.11,d.48.1.1 32282,38767 1r8sA 164 40.47 c.37.1.8 97247 2gcoA 201 40.76 2chgA 226 41.21 1wf3A 301 41.29 c.37.1.8,d.52.3.1 114574,114575 2p65A 187 42.66 2p5sA 199 47.38 3bh0A 315 47.92 2zejA 184 48.93 2h17A 181 49.21 1udxA 416 49.26 b.117.1.1,c.37.1.8,d.242.1.1 99228,99229,99230 2qjwA 176 50.46 1zj6A 187 50.68 c.37.1.8 125145 2bkhA 814 52.45 1sviA 195 53.18 c.37.1.8 106048 2v26A 784 53.32 1b6g 310 53.34 1o3yA 166 53.79 c.37.1.8 86618 1kshA 186 54.57 c.37.1.8 72914 1w78A 422 55.47 1w9iA 770 55.76 3cwqA 209 55.94 1fzqA 181 56.41 c.37.1.8 32060 1uptA 171 57.65 c.37.1.8 99767 2q3fA 181 58.05 2gdjA 264 59.06 c.37.1.11 135018 2hxsA 178 60.30 1tcaA 317 61.34 c.69.1.17 34726 2o2gA 223 62.62 1f6bA 198 63.08 c.37.1.8 64986 1ufoA 238 63.11 c.69.1.27 99344 1z06A 189 64.04 c.37.1.8 124301 2nwhA 317 64.40 2hjgA 436 65.08 1u0jA 267 65.09 c.37.1.20 107546 2r8rA 228 66.14 1nf3A 195 66.95 c.37.1.8 85594 2qmoA 220 68.70 2og1A 286 69.19 2d5bA 500 69.93 a.27.1.1,c.26.1.1 131268,131269 2g6bA 180 70.01 c.37.1.8 134701 1eg7A 557 70.41 c.37.1.10 32241 1pjr 724 70.76 1z2aA 168 70.92 c.37.1.8 124374 2dbyA 368 70.97 1yzqA 170 73.79 c.37.1.8 124286 1brt 277 75.70 1byiA 224 75.72 c.37.1.10 32199 3c5cA 187 78.89 2jbwA 386 79.77 1xtqA 177 80.62 c.37.1.8 122297 2a5jA 191 81.19 c.37.1.8 126175 2c61A 469 84.06 2z43A 324 84.54 1jalA 363 85.63 c.37.1.8,d.15.10.2 84138,84139 1kmqA 184 85.69 c.37.1.8 84412 3tglA 269 86.35 c.69.1.17 34733 2gk6A 624 87.53 1o5zA 442 89.63 c.59.1.2,c.72.2.2 92530,92531