# List of top-scoring protein chains for t06-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1gky 187 1.22e-06 1znwA 207 1.98e-06 c.37.1.1 125412 1kjwA 295 3.22e-06 b.34.2.1,c.37.1.1 68643,68644 1ex7A 186 4.51e-06 c.37.1.1 59537 2qorA 204 5.11e-06 2j41A 207 5.82e-06 1kgdA 180 7.74e-06 c.37.1.1 68582 2pbrA 195 1.63e-05 4tmkA 213 2.36e-05 c.37.1.1 31930 1s96A 219 0.000134 c.37.1.1 98740 2an9A 207 0.000137 c.37.1.1 127037 1gtvA 214 0.000169 c.37.1.1 70537 2ccjA 205 0.000193 1p5zB 263 0.000235 c.37.1.1 87815 2z0hA 197 0.000255 1ukzA 203 0.000256 c.37.1.1 31840 1of1A 376 0.000264 c.37.1.1 103924 1qf9A 194 0.000323 c.37.1.1 31848 2c95A 196 0.000330 1ukz 203 0.000370 1e2kA 331 0.000421 c.37.1.1 31854 1p6xA 334 0.000442 c.37.1.1 94195 2bwjA 199 0.000552 1t0hB 224 0.001062 c.37.1.1 106208 2cdnA 201 0.001444 c.37.1.1 130289 1ki9A 192 0.001945 c.37.1.1 84404 2qt1A 207 0.002367 2vp4A 230 0.002386 2plrA 213 0.002399 1zm7A 230 0.002445 2axpA 173 0.002552 c.37.1.1 127497 1vhtA 218 0.003222 c.37.1.1 100700 1y63A 184 0.004469 c.37.1.1 116494 1ak2A 233 0.004928 c.37.1.1,g.41.2.1 31894,45195 2f6rA 281 0.005087 1khtA 192 0.005436 c.37.1.1 84401 1akyA 220 0.005484 c.37.1.1,g.41.2.1 31896,45197 2rgxA 206 0.005766 1qhxA 178 0.006606 c.37.1.3 31936 1zin 217 0.006652 1e4yA 214 0.007184 c.37.1.1,g.41.2.1 31901,45181 2ak3A 226 0.007465 c.37.1.1,g.41.2.1 31892,45193 2rhmA 193 0.008327 3be4A 217 0.008404 1zd8A 227 0.01145 1e6cA 173 0.01169 c.37.1.2 59296 1kdoA 227 0.01208 c.37.1.1 68478 3tmkA 216 0.01484 c.37.1.1 31920 1zinA 217 0.01550 c.37.1.1,g.41.2.1 31915,45178 2eu8A 216 0.01559 1ckeA 227 0.01613 c.37.1.1 31846 2pezA 179 0.01771 1knqA 175 0.01831 c.37.1.17 72786 1viaA 175 0.01877 c.37.1.2 100754 1jjvA 206 0.01887 c.37.1.1 71698 1uj2A 252 0.01896 c.37.1.6 99452 1nn5A 215 0.02254 c.37.1.1 85892 2bdtA 189 0.02307 c.37.1.25 128344 2yvuA 186 0.02770 2grjA 192 0.02884 2iyvA 184 0.03622 c.37.1.2 137812 1xrjA 261 0.04140 c.37.1.6 122256 2g1kA 176 0.04502 c.37.1.2 134519 2pt5A 168 0.04568 1rkbA 173 0.06129 c.37.1.1 111854 3c8uA 208 0.09174 1ltqA 301 0.09868 c.108.1.9,c.37.1.1 78208,78209 1zuhA 168 0.1016 1ly1A 181 0.1231 c.37.1.1 74334 1m7gA 211 0.1781 c.37.1.4 78724 1gvnB 287 0.2460 c.37.1.21 76354 1rz3A 201 0.2480 c.37.1.6 98132 2qgnA 322 0.2555 2ax4A 198 0.2631 3crrA 323 0.3364 1kagA 173 0.3719 c.37.1.2 72249 2p5tB 253 0.5813 1dekA 241 0.8328 c.37.1.1 31842 1a7jA 290 1.241 c.37.1.6 31952 1a7j 290 1.282 1xjcA 169 1.672 c.37.1.10 115387 2f1rA 171 1.708 1l2tA 235 1.780 c.37.1.12 73514 1np6A 174 1.991 c.37.1.10 85954 1xx6A 191 2.869 c.37.1.24,g.39.1.14 116139,116140 1lv7A 257 2.978 c.37.1.20 78232 2pzeA 229 3.717 2nq2C 253 3.796 2cbzA 237 3.801 2pcjA 224 4.123 1in4A 334 4.440 a.4.5.11,c.37.1.20 62597,62598 2pmkA 243 4.794 1g6hA 257 5.307 c.37.1.12 60318 1yqtA 538 5.351 2ze7A 253 5.374 2p67A 341 5.416 2ihyA 279 5.543 2fnaA 357 5.543 a.4.5.11,c.37.1.20 133809,133810 1w5tA 412 5.686 a.4.5.11,c.37.1.20 114255,114256 2d2eA 250 5.700 1ji0A 240 5.800 c.37.1.12 71665 1vplA 256 6.394 c.37.1.12 113966 1rj9A 304 6.463 a.24.13.1,c.37.1.10 97553,97554 2ga8A 359 7.414 1g291 372 7.444 2orwA 184 7.587 2ixeA 271 8.243 2hf9A 226 8.279 1d2nA 272 8.626 c.37.1.20 32428 1fnnA 389 8.742 a.4.5.11,c.37.1.20 16129,32426 2ff7A 247 8.862 c.37.1.12 133377 1sgwA 214 8.932 c.37.1.12 105541 1in6A 334 8.998 a.4.5.11,c.37.1.20 62601,62602 2gzaA 361 9.235 1u94A 356 9.346 c.37.1.11,d.48.1.1 107743,107744 2c8vA 288 9.390 c.37.1.10 130128 2bbsA 290 9.771 1g6oA 330 9.790 c.37.1.11 32430 2it1A 362 9.924 1z47A 355 9.942 1zu4A 320 9.942 1sq5A 308 10.33 c.37.1.6 105882 2vhjA 331 10.43 2r44A 331 10.76 1tq4A 413 11.17 c.37.1.8 107201 2qi9C 249 11.52 1a5t 334 11.65 1b0uA 262 11.81 c.37.1.12 32370 2qy9A 309 11.90 1xewX 182 12.34 c.37.1.12 115235 1a5tA 334 12.93 a.80.1.1,c.37.1.20 18450,32423 1bifA 469 13.40 c.37.1.7,c.60.1.4 31961,34003 2pjzA 263 13.71 2q3hA 201 13.74 2afhE 289 13.86 c.37.1.10 126683 1xd8A 289 13.86 1gl6A 436 15.13 c.37.1.11 70259 2r2aA 199 15.40 1oxxK 353 15.91 b.40.6.3,c.37.1.12 93715,93716 2bekA 257 15.94 1ihuA 589 15.97 c.37.1.10,c.37.1.10 62394,62395 2pt7A 330 16.06 1g8pA 350 16.15 c.37.1.20 60376 1wcv1 257 16.54 2dpxA 174 16.98 2cvhA 220 17.52 1mh1A 186 18.22 c.37.1.8 32002 1e9rA 437 18.34 c.37.1.11 64827 2gjsA 176 18.37 c.37.1.8 135287 1w4rA 195 18.72 1h65A 270 18.83 c.37.1.8 65640 2akaB 299 19.03 c.37.1.8 126914 2og2A 359 19.91 1knxA 312 20.35 c.98.2.1,c.91.1.2 77459,77460 1tueA 212 20.52 c.37.1.20 107323 2b8tA 223 21.67 c.37.1.24,g.39.1.14 128109,128110 1x6vA 630 22.30 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 1m7bA 184 22.36 c.37.1.8 74572 1bif 469 22.44 1njgA 250 23.14 c.37.1.20 85785 1zj6A 187 23.85 c.37.1.8 125145 1cp2A 269 23.95 c.37.1.10 32269 2eyuA 261 24.65 1ky3A 182 25.06 c.37.1.8 73193 2oap1 511 26.35 1cr1A 296 26.71 c.37.1.11 32286 1htwA 158 27.36 c.37.1.18 71083 1ufoA 238 27.41 c.69.1.27 99344 1sxjC 340 27.68 a.80.1.1,c.37.1.20 106085,106086 1z08A 170 27.86 c.37.1.8 124303 1xp8A 366 28.29 c.37.1.11,d.48.1.1 115735,115736 2zadA 345 30.55 1pujA 282 31.02 c.37.1.8 88294 1g41A 444 31.76 c.37.1.20 32450 1ls1A 295 32.11 a.24.13.1,c.37.1.10 78170,78171 2bcgY 206 32.91 c.37.1.8 128285 1sxjA 511 33.19 a.80.1.1,c.37.1.20 106081,106082 3b9qA 302 34.09 1wf3A 301 34.37 c.37.1.8,d.52.3.1 114574,114575 1qhlA 227 34.42 c.37.1.12 32382 2qgzA 308 34.44 2j69A 695 35.32 1uxoA 192 35.57 c.69.1.31 108121 2bjvA 265 36.83 2qm8A 337 39.20 1nijA 318 39.22 c.37.1.10,d.237.1.1 85741,85742 1j8mF 297 40.50 a.24.13.1,c.37.1.10 62742,62743 3bwdD 182 41.18 1sxjE 354 41.34 a.80.1.1,c.37.1.20 106089,106090 2a5dA 175 41.39 c.37.1.8 126172 2i1qA 322 41.63 a.60.4.1,c.37.1.11 136984,136985 2c9oA 456 41.93 2zejA 184 43.09 1r8sA 164 48.86 c.37.1.8 97247 1jbkA 195 50.04 c.37.1.20 71631 1odfA 290 50.79 c.37.1.6 92782 2chgA 226 51.56 3b9pA 297 51.63 3bosA 242 52.79 1f6bA 198 52.82 c.37.1.8 64986 2dr3A 247 53.19 2e87A 357 55.07 1w44A 331 55.89 c.37.1.11 114147 1fzqA 181 56.03 c.37.1.8 32060 2a5yB 549 56.30 2p65A 187 56.92 1g3qA 237 57.82 c.37.1.10 60237 3c5cA 187 58.69 3bs4A 260 59.19 2og1A 286 59.21 1u9iA 519 59.47 c.37.1.11,c.37.1.11 119637,119638 1uptA 171 60.01 c.37.1.8 99767 2gcoA 201 61.78 1x3sA 195 62.55 c.37.1.8 121670 2bmeA 186 63.27 c.37.1.8 128790 1ye8A 178 64.13 c.37.1.11 123010 1tca 317 64.14 2h17A 181 64.36 1kshA 186 64.52 c.37.1.8 72914 2qjwA 176 65.22 2hu5A 582 65.60 b.69.7.2,c.69.1.33 136763,136764 2rexB 197 66.67 1z2aA 168 67.49 c.37.1.8 124374 1ionA 243 67.70 c.37.1.10 62633 1w9iA 770 68.43 1ko7A 314 68.81 c.98.2.1,c.91.1.2 72797,72798 2gxaA 274 70.63 2oblA 347 72.79 2r8rA 228 74.40 1kmqA 184 75.85 c.37.1.8 84412 2g6bA 180 75.85 c.37.1.8 134701 1byi 224 76.01 2q3fA 181 77.68 1o3yA 166 79.42 c.37.1.8 86618 2qu8A 228 79.97 2o5vA 359 80.96 1nlfA 279 83.43 c.37.1.11 85850 1g8mA 593 84.09 c.24.1.3,c.97.1.4 60371,60372 2v26A 784 84.77 2j4dA 525 85.39 1pjrA 724 86.24 c.37.1.19,c.37.1.19 32391,32392 2ozeA 298 87.69 1z06A 189 88.79 c.37.1.8 124301