# List of top-scoring protein chains for t06-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1gky 187 1.04e-06 1znwA 207 2.00e-06 c.37.1.1 125412 1kjwA 295 2.90e-06 b.34.2.1,c.37.1.1 68643,68644 1ex7A 186 4.12e-06 c.37.1.1 59537 2qorA 204 4.24e-06 2j41A 207 5.47e-06 1kgdA 180 7.14e-06 c.37.1.1 68582 2pbrA 195 1.33e-05 4tmkA 213 2.27e-05 c.37.1.1 31930 1s96A 219 0.000129 c.37.1.1 98740 2an9A 207 0.000136 c.37.1.1 127037 2ccjA 205 0.000177 1gtvA 214 0.000200 c.37.1.1 70537 2z0hA 197 0.000249 1ukzA 203 0.000252 c.37.1.1 31840 1p5zB 263 0.000252 c.37.1.1 87815 1of1A 376 0.000254 c.37.1.1 103924 1qf9A 194 0.000369 c.37.1.1 31848 2c95A 196 0.000385 1p6xA 334 0.000388 c.37.1.1 94195 1ukz 203 0.000393 1e2kA 331 0.000505 c.37.1.1 31854 2bwjA 199 0.000600 1t0hB 224 0.000799 c.37.1.1 106208 2cdnA 201 0.001439 c.37.1.1 130289 1ki9A 192 0.001625 c.37.1.1 84404 2vp4A 230 0.002204 2plrA 213 0.002284 1zm7A 230 0.002302 2axpA 173 0.002532 c.37.1.1 127497 2qt1A 207 0.002660 1y63A 184 0.003697 c.37.1.1 116494 1khtA 192 0.004165 c.37.1.1 84401 1vhtA 218 0.004173 c.37.1.1 100700 2f6rA 281 0.004732 1qhxA 178 0.004945 c.37.1.3 31936 2rgxA 206 0.005613 1akyA 220 0.006328 c.37.1.1,g.41.2.1 31896,45197 1ak2A 233 0.006385 c.37.1.1,g.41.2.1 31894,45195 2ak3A 226 0.006821 c.37.1.1,g.41.2.1 31892,45193 1zin 217 0.007290 1e4yA 214 0.008400 c.37.1.1,g.41.2.1 31901,45181 3be4A 217 0.009399 2rhmA 193 0.01024 1e6cA 173 0.01038 c.37.1.2 59296 1kdoA 227 0.01129 c.37.1.1 68478 1zd8A 227 0.01147 3tmkA 216 0.01167 c.37.1.1 31920 1ckeA 227 0.01542 c.37.1.1 31846 1zinA 217 0.01585 c.37.1.1,g.41.2.1 31915,45178 2eu8A 216 0.01676 1jjvA 206 0.01887 c.37.1.1 71698 1viaA 175 0.01912 c.37.1.2 100754 1knqA 175 0.01970 c.37.1.17 72786 1uj2A 252 0.02130 c.37.1.6 99452 2pezA 179 0.02175 2grjA 192 0.02442 1nn5A 215 0.02457 c.37.1.1 85892 2bdtA 189 0.02605 c.37.1.25 128344 2yvuA 186 0.02663 2iyvA 184 0.03126 c.37.1.2 137812 2pt5A 168 0.03925 1xrjA 261 0.03973 c.37.1.6 122256 2g1kA 176 0.04302 c.37.1.2 134519 1rkbA 173 0.05858 c.37.1.1 111854 1zuhA 168 0.09655 3c8uA 208 0.1025 1ltqA 301 0.1046 c.108.1.9,c.37.1.1 78208,78209 1ly1A 181 0.1083 c.37.1.1 74334 1m7gA 211 0.2096 c.37.1.4 78724 1rz3A 201 0.2250 c.37.1.6 98132 1gvnB 287 0.2251 c.37.1.21 76354 2qgnA 322 0.2457 2ax4A 198 0.3048 3crrA 323 0.3065 1kagA 173 0.3862 c.37.1.2 72249 2p5tB 253 0.5353 1dekA 241 0.8282 c.37.1.1 31842 1a7jA 290 1.067 c.37.1.6 31952 1a7j 290 1.467 2f1rA 171 1.614 1xjcA 169 1.646 c.37.1.10 115387 1l2tA 235 1.789 c.37.1.12 73514 1np6A 174 2.213 c.37.1.10 85954 1xx6A 191 2.382 c.37.1.24,g.39.1.14 116139,116140 1lv7A 257 3.147 c.37.1.20 78232 2ze7A 253 3.221 2nq2C 253 3.288 2pcjA 224 3.973 2cbzA 237 4.026 1w5tA 412 4.203 a.4.5.11,c.37.1.20 114255,114256 1in4A 334 4.285 a.4.5.11,c.37.1.20 62597,62598 2pzeA 229 4.350 2p67A 341 4.477 1g6hA 257 4.857 c.37.1.12 60318 2pmkA 243 5.021 1yqtA 538 5.098 2d2eA 250 5.118 1ji0A 240 5.278 c.37.1.12 71665 2fnaA 357 5.327 a.4.5.11,c.37.1.20 133809,133810 2ihyA 279 5.787 1vplA 256 6.267 c.37.1.12 113966 1rj9A 304 6.910 a.24.13.1,c.37.1.10 97553,97554 2ga8A 359 6.919 2ixeA 271 7.228 2orwA 184 7.275 1g291 372 7.568 1sgwA 214 7.620 c.37.1.12 105541 2hf9A 226 7.871 1fnnA 389 8.310 a.4.5.11,c.37.1.20 16129,32426 1in6A 334 8.455 a.4.5.11,c.37.1.20 62601,62602 1u94A 356 8.642 c.37.1.11,d.48.1.1 107743,107744 1d2nA 272 8.713 c.37.1.20 32428 2gzaA 361 8.902 1z47A 355 9.039 2it1A 362 9.131 1sq5A 308 9.745 c.37.1.6 105882 2ff7A 247 9.98 c.37.1.12 133377 2q3hA 201 10.06 1g6oA 330 10.20 c.37.1.11 32430 2qi9C 249 10.21 2r44A 331 10.21 2vhjA 331 10.22 1a5t 334 10.39 1a5tA 334 10.70 a.80.1.1,c.37.1.20 18450,32423 2c8vA 288 11.39 c.37.1.10 130128 2qy9A 309 11.48 2bbsA 290 11.70 1bifA 469 11.95 c.37.1.7,c.60.1.4 31961,34003 1xewX 182 12.08 c.37.1.12 115235 2pjzA 263 12.20 1tq4A 413 12.25 c.37.1.8 107201 1b0uA 262 12.41 c.37.1.12 32370 1zu4A 320 12.56 1gl6A 436 13.67 c.37.1.11 70259 1mh1A 186 13.79 c.37.1.8 32002 1ihuA 589 14.00 c.37.1.10,c.37.1.10 62394,62395 1oxxK 353 14.36 b.40.6.3,c.37.1.12 93715,93716 1e9rA 437 14.54 c.37.1.11 64827 1h65A 270 14.71 c.37.1.8 65640 1g8pA 350 14.92 c.37.1.20 60376 2gjsA 176 14.94 c.37.1.8 135287 2dpxA 174 15.67 2r2aA 199 16.46 2cvhA 220 16.49 1m7bA 184 16.67 c.37.1.8 74572 2pt7A 330 17.23 1tueA 212 17.53 c.37.1.20 107323 2bekA 257 17.68 1xd8A 289 17.97 1knxA 312 19.22 c.98.2.1,c.91.1.2 77459,77460 2afhE 289 19.83 c.37.1.10 126683 2akaB 299 19.92 c.37.1.8 126914 1bif 469 20.14 1sxjC 340 20.53 a.80.1.1,c.37.1.20 106085,106086 2eyuA 261 20.70 2bcgY 206 21.48 c.37.1.8 128285 1wcv1 257 21.63 1ky3A 182 22.55 c.37.1.8 73193 1njgA 250 22.77 c.37.1.20 85785 2b8tA 223 23.12 c.37.1.24,g.39.1.14 128109,128110 1w4rA 195 23.29 1xp8A 366 23.93 c.37.1.11,d.48.1.1 115735,115736 1z08A 170 23.95 c.37.1.8 124303 1zj6A 187 24.11 c.37.1.8 125145 1sxjA 511 25.77 a.80.1.1,c.37.1.20 106081,106082 2qm8A 337 26.61 1wf3A 301 27.15 c.37.1.8,d.52.3.1 114574,114575 3bwdD 182 27.44 1cr1A 296 27.58 c.37.1.11 32286 1x6vA 630 27.98 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 1pujA 282 28.16 c.37.1.8 88294 2og2A 359 28.27 2oap1 511 28.79 1cp2A 269 29.77 c.37.1.10 32269 1htwA 158 30.20 c.37.1.18 71083 1uxoA 192 30.81 c.69.1.31 108121 1qhlA 227 32.86 c.37.1.12 32382 2qgzA 308 33.04 2gxaA 274 33.62 2zadA 345 35.25 1sxjE 354 35.54 a.80.1.1,c.37.1.20 106089,106090 3b9qA 302 35.60 2zejA 184 35.80 2bjvA 265 36.18 1f6bA 198 36.33 c.37.1.8 64986 1ufoA 238 36.51 c.69.1.27 99344 1nijA 318 36.88 c.37.1.10,d.237.1.1 85741,85742 1g41A 444 38.18 c.37.1.20 32450 2a5yB 549 38.19 3c5cA 187 39.47 1ls1A 295 39.88 a.24.13.1,c.37.1.10 78170,78171 2i1qA 322 40.03 a.60.4.1,c.37.1.11 136984,136985 2a5dA 175 41.15 c.37.1.8 126172 3bs4A 260 42.51 1r8sA 164 43.46 c.37.1.8 97247 2gcoA 201 44.74 3bosA 242 44.75 1fzqA 181 45.45 c.37.1.8 32060 1ye8A 178 46.13 c.37.1.11 123010 2rexB 197 46.67 2e87A 357 47.19 1j8mF 297 48.01 a.24.13.1,c.37.1.10 62742,62743 1odfA 290 48.28 c.37.1.6 92782 1jbkA 195 49.03 c.37.1.20 71631 2chgA 226 49.04 1uptA 171 49.54 c.37.1.8 99767 3b9pA 297 49.81 2c9oA 456 50.76 1w44A 331 51.22 c.37.1.11 114147 1kshA 186 52.32 c.37.1.8 72914 2h17A 181 53.16 2j69A 695 53.20 1z2aA 168 56.63 c.37.1.8 124374 1x3sA 195 57.57 c.37.1.8 121670 2dr3A 247 57.70 2qjwA 176 58.20 1kmqA 184 59.26 c.37.1.8 84412 1g3qA 237 59.66 c.37.1.10 60237 1u9iA 519 59.77 c.37.1.11,c.37.1.11 119637,119638 2o5vA 359 59.99 1tca 317 60.02 3bfkA 181 60.65 2og1A 286 60.79 2bmeA 186 62.57 c.37.1.8 128790 2gj8A 172 62.86 c.37.1.8 135270 1o3yA 166 65.11 c.37.1.8 86618 2fz4A 237 65.22 c.37.1.19 134419 1w9iA 770 66.29 2q3fA 181 66.99 1ko7A 314 67.33 c.98.2.1,c.91.1.2 72797,72798 1pjrA 724 67.51 c.37.1.19,c.37.1.19 32391,32392 1nlfA 279 68.25 c.37.1.11 85850 1svmA 377 70.12 c.37.1.20 112126 2g6bA 180 70.74 c.37.1.8 134701 1g8mA 593 70.82 c.24.1.3,c.97.1.4 60371,60372 2r8rA 228 72.46 1byi 224 74.54 2p65A 187 76.24 2a5jA 191 76.29 c.37.1.8 126175 2v26A 784 78.48 1ionA 243 80.03 c.37.1.10 62633 1b6g 310 82.67 2o2gA 223 85.00 1yzqA 170 85.47 c.37.1.8 124286 1z06A 189 86.40 c.37.1.8 124301 2oblA 347 88.70 2gf9A 189 89.10 2bmjA 178 89.21 c.37.1.8 128797 1l7aA 318 89.82 c.69.1.25 77772