# List of top-scoring protein chains for t06-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1znwA 207 1.34e-07 c.37.1.1 125412 1gky 187 1.76e-07 2qorA 204 2.52e-07 1kjwA 295 5.37e-07 b.34.2.1,c.37.1.1 68643,68644 1ex7A 186 9.53e-07 c.37.1.1 59537 2j41A 207 1.03e-06 1kgdA 180 2.20e-06 c.37.1.1 68582 2pbrA 195 2.79e-06 1s96A 219 9.15e-06 c.37.1.1 98740 2an9A 207 1.12e-05 c.37.1.1 127037 4tmkA 213 1.15e-05 c.37.1.1 31930 1ukzA 203 1.76e-05 c.37.1.1 31840 2c95A 196 3.22e-05 1ukz 203 4.07e-05 1qf9A 194 4.36e-05 c.37.1.1 31848 2ccjA 205 6.43e-05 1gtvA 214 9.72e-05 c.37.1.1 70537 2bwjA 199 9.73e-05 2z0hA 197 0.000129 1p5zB 263 0.000139 c.37.1.1 87815 1of1A 376 0.000170 c.37.1.1 103924 1t0hB 224 0.000233 c.37.1.1 106208 2cdnA 201 0.000238 c.37.1.1 130289 2plrA 213 0.000264 1ki9A 192 0.000277 c.37.1.1 84404 2axpA 173 0.000359 c.37.1.1 127497 1p6xA 334 0.000432 c.37.1.1 94195 1vhtA 218 0.000464 c.37.1.1 100700 1e2kA 331 0.000507 c.37.1.1 31854 2ak3A 226 0.000512 c.37.1.1,g.41.2.1 31892,45193 1e6cA 173 0.000547 c.37.1.2 59296 1akyA 220 0.000618 c.37.1.1,g.41.2.1 31896,45197 1ak2A 233 0.000802 c.37.1.1,g.41.2.1 31894,45195 2rgxA 206 0.000808 1qhxA 178 0.000858 c.37.1.3 31936 1zin 217 0.001168 2qt1A 207 0.001177 1khtA 192 0.001242 c.37.1.1 84401 1zd8A 227 0.001298 1y63A 184 0.001648 c.37.1.1 116494 1nn5A 215 0.001723 c.37.1.1 85892 2iyvA 184 0.001875 c.37.1.2 137812 3be4A 217 0.001877 1zinA 217 0.001893 c.37.1.1,g.41.2.1 31915,45178 1e4yA 214 0.002159 c.37.1.1,g.41.2.1 31901,45181 2f6rA 281 0.002160 2eu8A 216 0.002522 2vp4A 230 0.002845 3tmkA 216 0.002871 c.37.1.1 31920 1zm7A 230 0.003651 2rhmA 193 0.003766 2g1kA 176 0.003910 c.37.1.2 134519 2bdtA 189 0.004511 c.37.1.25 128344 2pt5A 168 0.004599 2yvuA 186 0.005492 1viaA 175 0.005561 c.37.1.2 100754 1kdoA 227 0.007988 c.37.1.1 68478 1rkbA 173 0.009132 c.37.1.1 111854 1ckeA 227 0.009399 c.37.1.1 31846 3c8uA 208 0.01155 1jjvA 206 0.01208 c.37.1.1 71698 2grjA 192 0.01269 1knqA 175 0.01513 c.37.1.17 72786 2pezA 179 0.01574 1zuhA 168 0.02193 1xrjA 261 0.03002 c.37.1.6 122256 1uj2A 252 0.03535 c.37.1.6 99452 1kagA 173 0.04993 c.37.1.2 72249 1rz3A 201 0.05156 c.37.1.6 98132 1m7gA 211 0.05444 c.37.1.4 78724 2ax4A 198 0.06463 3crrA 323 0.1074 1gvnB 287 0.1108 c.37.1.21 76354 2qgnA 322 0.1662 1a7jA 290 0.3502 c.37.1.6 31952 1ltqA 301 0.3974 c.108.1.9,c.37.1.1 78208,78209 1ly1A 181 0.5547 c.37.1.1 74334 2p5tB 253 0.8808 1dekA 241 0.9297 c.37.1.1 31842 1a7j 290 1.975 2f1rA 171 2.182 1lv7A 257 2.915 c.37.1.20 78232 1np6A 174 3.056 c.37.1.10 85954 2ga8A 359 3.600 1xx6A 191 3.924 c.37.1.24,g.39.1.14 116139,116140 2ze7A 253 4.289 2cbzA 237 4.401 1bifA 469 4.751 c.37.1.7,c.60.1.4 31961,34003 1sq5A 308 4.807 c.37.1.6 105882 1w5tA 412 4.831 a.4.5.11,c.37.1.20 114255,114256 2p67A 341 5.256 2fnaA 357 5.635 a.4.5.11,c.37.1.20 133809,133810 2orwA 184 6.004 2d2eA 250 6.370 1yqtA 538 6.977 1bif 469 7.030 1rj9A 304 7.630 a.24.13.1,c.37.1.10 97553,97554 1in4A 334 7.867 a.4.5.11,c.37.1.20 62597,62598 1ji0A 240 8.064 c.37.1.12 71665 1g6oA 330 8.405 c.37.1.11 32430 1g6hA 257 8.530 c.37.1.12 60318 1sxjA 511 9.599 a.80.1.1,c.37.1.20 106081,106082 2vhjA 331 9.645 2ihyA 279 10.05 2bbsA 290 10.06 1l2tA 235 10.16 c.37.1.12 73514 2c8vA 288 10.19 c.37.1.10 130128 1d2nA 272 10.21 c.37.1.20 32428 2ixeA 271 10.67 2pt7A 330 10.84 1in6A 334 10.87 a.4.5.11,c.37.1.20 62601,62602 1sgwA 214 11.65 c.37.1.12 105541 2pcjA 224 11.91 2qi9C 249 12.50 2pmkA 243 12.67 2eyuA 261 12.77 2gzaA 361 13.04 2ff7A 247 13.49 c.37.1.12 133377 1w44A 331 14.24 c.37.1.11 114147 2pzeA 229 14.37 1a5t 334 14.70 2nq2C 253 14.85 2oap1 511 14.88 1odfA 290 15.26 c.37.1.6 92782 1b0uA 262 16.71 c.37.1.12 32370 2b8tA 223 17.22 c.37.1.24,g.39.1.14 128109,128110 1g41A 444 18.01 c.37.1.20 32450 2r44A 331 18.17 2bjvA 265 18.18 2it1A 362 18.55 1vplA 256 18.59 c.37.1.12 113966 3b9qA 302 18.89 1z47A 355 18.95 1ihuA 589 19.22 c.37.1.10,c.37.1.10 62394,62395 1a5tA 334 19.77 a.80.1.1,c.37.1.20 18450,32423 1g8pA 350 19.78 c.37.1.20 60376 2pjzA 263 19.80 1knxA 312 20.07 c.98.2.1,c.91.1.2 77459,77460 1zu4A 320 20.62 2akaB 299 20.69 c.37.1.8 126914 2r2aA 199 21.36 2qy9A 309 21.52 1f6bA 198 21.54 c.37.1.8 64986 2q3hA 201 21.83 2dpxA 174 24.32 2qjwA 176 24.77 1nijA 318 24.97 c.37.1.10,d.237.1.1 85741,85742 2afhE 289 25.25 c.37.1.10 126683 1xjcA 169 25.47 c.37.1.10 115387 1gl6A 436 25.60 c.37.1.11 70259 1uxoA 192 28.45 c.69.1.31 108121 2qmoA 220 29.77 2gjsA 176 30.36 c.37.1.8 135287 1ky3A 182 31.79 c.37.1.8 73193 1ls1A 295 32.33 a.24.13.1,c.37.1.10 78170,78171 1xd8A 289 32.33 1ye8A 178 32.58 c.37.1.11 123010 1cp2A 269 33.08 c.37.1.10 32269 1x6vA 630 35.04 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 1tueA 212 35.05 c.37.1.20 107323 2c9oA 456 35.62 2cvhA 220 35.91 3bfkA 181 37.01 1ycdA 243 39.18 1ko7A 314 39.94 c.98.2.1,c.91.1.2 72797,72798 2bekA 257 40.32 1w9iA 770 42.59 2og2A 359 42.60 1fnnA 389 43.55 a.4.5.11,c.37.1.20 16129,32426 2qm8A 337 44.27 1mh1A 186 45.87 c.37.1.8 32002 1fzqA 181 46.06 c.37.1.8 32060 1zj6A 187 46.32 c.37.1.8 125145 1e9rA 437 47.71 c.37.1.11 64827 1m7bA 184 47.88 c.37.1.8 74572 1xewX 182 48.21 c.37.1.12 115235 2bkhA 814 48.55 1z08A 170 49.17 c.37.1.8 124303 1z2aA 168 49.60 c.37.1.8 124374 2bmeA 186 50.03 c.37.1.8 128790 1yrbA 262 50.92 c.37.1.10 123915 2hjgA 436 51.45 1j8mF 297 52.93 a.24.13.1,c.37.1.10 62742,62743 1r8sA 164 55.07 c.37.1.8 97247 1g291 372 56.22 1oxxK 353 61.93 b.40.6.3,c.37.1.12 93715,93716 3bwdD 182 62.18 1njgA 250 63.43 c.37.1.20 85785 1sviA 195 63.51 c.37.1.8 106048 2hf9A 226 66.38 2gxaA 274 67.15 2v26A 784 68.43 1r2qA 170 68.67 c.37.1.8 96874 1g3qA 237 68.99 c.37.1.10 60237 2gj8A 172 69.54 c.37.1.8 135270 1u0jA 267 70.11 c.37.1.20 107546 1tca 317 70.41 2dykA 161 70.95 1qhlA 227 71.82 c.37.1.12 32382 1byi 224 71.99 2bcgY 206 72.28 c.37.1.8 128285 1yzqA 170 74.60 c.37.1.8 124286 2hxsA 178 74.89 1wcv1 257 75.92 2gf9A 189 78.58 2rexB 197 79.80 2p5sA 199 80.02 1sxjC 340 82.91 a.80.1.1,c.37.1.20 106085,106086 3bosA 242 83.34 2h17A 181 84.90 1ionA 243 86.30 c.37.1.10 62633 2a5dA 175 89.13 c.37.1.8 126172