# List of top-scoring protein chains for t06-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1gky 187 4.83e-07 1kjwA 295 8.84e-07 b.34.2.1,c.37.1.1 68643,68644 1znwA 207 1.19e-06 c.37.1.1 125412 1ex7A 186 2.14e-06 c.37.1.1 59537 1kgdA 180 3.04e-06 c.37.1.1 68582 2j41A 207 4.11e-06 2qorA 204 4.55e-06 2pbrA 195 1.81e-05 4tmkA 213 4.25e-05 c.37.1.1 31930 2an9A 207 7.81e-05 c.37.1.1 127037 1s96A 219 8.79e-05 c.37.1.1 98740 1gtvA 214 0.000121 c.37.1.1 70537 2z0hA 197 0.000123 2ccjA 205 0.000226 1t0hB 224 0.000263 c.37.1.1 106208 1ukzA 203 0.000300 c.37.1.1 31840 1ukz 203 0.000313 2c95A 196 0.000337 1p6xA 334 0.000346 c.37.1.1 94195 1p5zB 263 0.000513 c.37.1.1 87815 1of1A 376 0.000545 c.37.1.1 103924 1e2kA 331 0.000603 c.37.1.1 31854 2bwjA 199 0.001035 1qf9A 194 0.001039 c.37.1.1 31848 1khtA 192 0.001253 c.37.1.1 84401 1ki9A 192 0.001367 c.37.1.1 84404 2qt1A 207 0.001395 2plrA 213 0.001576 1zm7A 230 0.001747 2cdnA 201 0.002183 c.37.1.1 130289 1vhtA 218 0.002292 c.37.1.1 100700 2vp4A 230 0.002357 2axpA 173 0.002595 c.37.1.1 127497 2rgxA 206 0.002772 2ak3A 226 0.003911 c.37.1.1,g.41.2.1 31892,45193 1e4yA 214 0.004456 c.37.1.1,g.41.2.1 31901,45181 1akyA 220 0.004821 c.37.1.1,g.41.2.1 31896,45197 3be4A 217 0.005496 1qhxA 178 0.006451 c.37.1.3 31936 1y63A 184 0.006785 c.37.1.1 116494 1zin 217 0.006981 1e6cA 173 0.007280 c.37.1.2 59296 1zinA 217 0.007478 c.37.1.1,g.41.2.1 31915,45178 1ak2A 233 0.007914 c.37.1.1,g.41.2.1 31894,45195 2f6rA 281 0.008341 1zd8A 227 0.008899 2eu8A 216 0.01001 1nn5A 215 0.01181 c.37.1.1 85892 2bdtA 189 0.01259 c.37.1.25 128344 3tmkA 216 0.01314 c.37.1.1 31920 1kdoA 227 0.01390 c.37.1.1 68478 1viaA 175 0.01398 c.37.1.2 100754 1jjvA 206 0.01610 c.37.1.1 71698 1ckeA 227 0.01722 c.37.1.1 31846 2rhmA 193 0.01744 2grjA 192 0.01899 2iyvA 184 0.02426 c.37.1.2 137812 1uj2A 252 0.02558 c.37.1.6 99452 2pt5A 168 0.02803 2g1kA 176 0.02918 c.37.1.2 134519 1xrjA 261 0.03569 c.37.1.6 122256 2pezA 179 0.04468 1knqA 175 0.04712 c.37.1.17 72786 3c8uA 208 0.05663 2yvuA 186 0.06768 1rkbA 173 0.06793 c.37.1.1 111854 1zuhA 168 0.09030 1ltqA 301 0.1036 c.108.1.9,c.37.1.1 78208,78209 1rz3A 201 0.1463 c.37.1.6 98132 3crrA 323 0.2531 1m7gA 211 0.2980 c.37.1.4 78724 1kagA 173 0.3164 c.37.1.2 72249 2ax4A 198 0.3776 2qgnA 322 0.3827 1gvnB 287 0.3843 c.37.1.21 76354 1dekA 241 0.4559 c.37.1.1 31842 1ly1A 181 0.5582 c.37.1.1 74334 2p5tB 253 1.016 1xx6A 191 1.209 c.37.1.24,g.39.1.14 116139,116140 1a7jA 290 1.290 c.37.1.6 31952 1l2tA 235 1.323 c.37.1.12 73514 2f1rA 171 1.506 1w5tA 412 1.602 a.4.5.11,c.37.1.20 114255,114256 1a7j 290 1.994 1xjcA 169 2.120 c.37.1.10 115387 1lv7A 257 2.246 c.37.1.20 78232 1np6A 174 2.263 c.37.1.10 85954 2ze7A 253 2.617 2pzeA 229 4.190 2cbzA 237 4.555 1yqtA 538 4.620 2pmkA 243 4.732 2pcjA 224 4.921 1g6hA 257 5.296 c.37.1.12 60318 2orwA 184 5.611 1in4A 334 5.894 a.4.5.11,c.37.1.20 62597,62598 2fnaA 357 6.413 a.4.5.11,c.37.1.20 133809,133810 2nq2C 253 6.571 2ihyA 279 6.678 1a5t 334 6.691 2d2eA 250 6.793 2ga8A 359 7.014 1vplA 256 7.084 c.37.1.12 113966 2eyuA 261 7.312 1u94A 356 7.642 c.37.1.11,d.48.1.1 107743,107744 2ff7A 247 7.805 c.37.1.12 133377 2vhjA 331 8.211 1sq5A 308 8.330 c.37.1.6 105882 1xewX 182 8.413 c.37.1.12 115235 1rj9A 304 8.778 a.24.13.1,c.37.1.10 97553,97554 2ixeA 271 8.818 2qi9C 249 9.604 2p67A 341 9.831 1b0uA 262 10.31 c.37.1.12 32370 1a5tA 334 10.44 a.80.1.1,c.37.1.20 18450,32423 2r2aA 199 10.72 1d2nA 272 10.81 c.37.1.20 32428 1fnnA 389 10.95 a.4.5.11,c.37.1.20 16129,32426 2bbsA 290 11.10 2pjzA 263 11.40 2it1A 362 11.78 1ji0A 240 11.84 c.37.1.12 71665 2dpxA 174 12.56 1g291 372 12.71 2gjsA 176 12.79 c.37.1.8 135287 2oap1 511 13.15 1xd8A 289 13.40 2qy9A 309 13.56 1z47A 355 13.58 2qm8A 337 13.82 2og2A 359 13.84 1knxA 312 14.22 c.98.2.1,c.91.1.2 77459,77460 2gzaA 361 14.65 1pujA 282 14.66 c.37.1.8 88294 1zu4A 320 14.68 1g6oA 330 14.79 c.37.1.11 32430 2b8tA 223 14.79 c.37.1.24,g.39.1.14 128109,128110 2bekA 257 14.95 2c8vA 288 15.12 c.37.1.10 130128 2afhE 289 15.13 c.37.1.10 126683 2hf9A 226 15.42 1bifA 469 16.03 c.37.1.7,c.60.1.4 31961,34003 1w4rA 195 16.24 1ye8A 178 16.39 c.37.1.11 123010 1tq4A 413 16.60 c.37.1.8 107201 1wcv1 257 17.04 1z08A 170 17.80 c.37.1.8 124303 1in6A 334 18.12 a.4.5.11,c.37.1.20 62601,62602 1e9rA 437 19.32 c.37.1.11 64827 1gl6A 436 19.80 c.37.1.11 70259 1zj6A 187 19.92 c.37.1.8 125145 2cvhA 220 19.92 1x6vA 630 20.02 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 2bjvA 265 20.66 2r44A 331 21.54 1ky3A 182 21.67 c.37.1.8 73193 2q3hA 201 22.04 1sxjA 511 22.55 a.80.1.1,c.37.1.20 106081,106082 1sgwA 214 23.24 c.37.1.12 105541 2bcgY 206 23.48 c.37.1.8 128285 2c9oA 456 23.84 2pt7A 330 26.76 1cp2A 269 26.96 c.37.1.10 32269 1tueA 212 27.12 c.37.1.20 107323 1uxoA 192 27.20 c.69.1.31 108121 2dr3A 247 28.00 1g8pA 350 28.18 c.37.1.20 60376 1g3qA 237 30.04 c.37.1.10 60237 1ls1A 295 30.37 a.24.13.1,c.37.1.10 78170,78171 1njgA 250 30.69 c.37.1.20 85785 1odfA 290 30.80 c.37.1.6 92782 2zadA 345 31.27 1ionA 243 31.43 c.37.1.10 62633 1mh1A 186 31.67 c.37.1.8 32002 1wf3A 301 31.67 c.37.1.8,d.52.3.1 114574,114575 1u9iA 519 33.08 c.37.1.11,c.37.1.11 119637,119638 1g41A 444 33.56 c.37.1.20 32450 2akaB 299 33.86 c.37.1.8 126914 3b9qA 302 34.00 2qjwA 176 34.09 2i1qA 322 34.19 a.60.4.1,c.37.1.11 136984,136985 1ko7A 314 34.39 c.98.2.1,c.91.1.2 72797,72798 3c5cA 187 34.50 1bif 469 35.30 1oxxK 353 35.85 b.40.6.3,c.37.1.12 93715,93716 1f6bA 198 35.95 c.37.1.8 64986 1m7bA 184 36.10 c.37.1.8 74572 1u0jA 267 37.89 c.37.1.20 107546 3bfkA 181 38.03 2zejA 184 38.17 1sxjC 340 40.84 a.80.1.1,c.37.1.20 106085,106086 2qu8A 228 40.89 2gj8A 172 42.10 c.37.1.8 135270 1kshA 186 43.90 c.37.1.8 72914 1yzqA 170 43.94 c.37.1.8 124286 1qhlA 227 44.31 c.37.1.12 32382 2rexB 197 44.36 1z2aA 168 44.54 c.37.1.8 124374 1j8mF 297 44.99 a.24.13.1,c.37.1.10 62742,62743 2qgzA 308 45.87 3bosA 242 46.07 1r8sA 164 46.19 c.37.1.8 97247 1byi 224 46.46 1sviA 195 50.56 c.37.1.8 106048 2a5dA 175 51.24 c.37.1.8 126172 3b9pA 297 51.69 2hxsA 178 51.70 2ozeA 298 54.33 2gcoA 201 54.43 2fz4A 237 54.91 c.37.1.19 134419 1xp8A 366 55.02 c.37.1.11,d.48.1.1 115735,115736 1uptA 171 55.10 c.37.1.8 99767 1w9iA 770 55.60 1h65A 270 55.72 c.37.1.8 65640 1x3sA 195 55.92 c.37.1.8 121670 2chgA 226 56.20 2oblA 347 56.34 1cr1A 296 56.50 c.37.1.11 32286 2bmeA 186 59.03 c.37.1.8 128790 2j69A 695 59.13 2q3fA 181 59.51 2rebA 352 61.16 c.37.1.11,d.48.1.1 32282,38767 2g6bA 180 62.55 c.37.1.8 134701 2a5yB 549 63.68 1sxjE 354 64.50 a.80.1.1,c.37.1.20 106089,106090 2p65A 187 64.69 1f2tA 149 67.15 c.37.1.12 32373 2gf9A 189 68.55 2h17A 181 69.25 2fn4A 181 70.13 c.37.1.8 133806 1o3yA 166 71.16 c.37.1.8 86618 1htwA 158 71.27 c.37.1.18 71083 1w44A 331 71.66 c.37.1.11 114147 1nlfA 279 72.07 c.37.1.11 85850 1tca 317 72.40 2bkhA 814 73.13 1ufoA 238 73.36 c.69.1.27 99344 1nijA 318 76.24 c.37.1.10,d.237.1.1 85741,85742 2e87A 357 77.26 2v26A 784 77.85 1fzqA 181 79.11 c.37.1.8 32060 2a5jA 191 79.27 c.37.1.8 126175 1z06A 189 79.81 c.37.1.8 124301 1ctqA 166 80.25 c.37.1.8 31965 2dpyA 438 83.94 1jalA 363 85.76 c.37.1.8,d.15.10.2 84138,84139 2p5sA 199 86.49 3bwdD 182 87.36