# List of top-scoring protein chains for t06-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1gky 187 6.18e-06 1kjwA 295 1.43e-05 b.34.2.1,c.37.1.1 68643,68644 1znwA 207 1.54e-05 c.37.1.1 125412 1ex7A 186 1.95e-05 c.37.1.1 59537 2qorA 204 3.57e-05 2j41A 207 3.89e-05 1kgdA 180 4.35e-05 c.37.1.1 68582 2pbrA 195 0.000226 4tmkA 213 0.000350 c.37.1.1 31930 2an9A 207 0.000718 c.37.1.1 127037 1s96A 219 0.000781 c.37.1.1 98740 2z0hA 197 0.001439 1ukzA 203 0.001460 c.37.1.1 31840 1t0hB 224 0.001882 c.37.1.1 106208 1ukz 203 0.001913 2ccjA 205 0.001997 1p5zB 263 0.002132 c.37.1.1 87815 1gtvA 214 0.002139 c.37.1.1 70537 2c95A 196 0.002197 1qf9A 194 0.002416 c.37.1.1 31848 2plrA 213 0.004406 2bwjA 199 0.004605 1ki9A 192 0.004862 c.37.1.1 84404 1p6xA 334 0.005334 c.37.1.1 94195 1khtA 192 0.006196 c.37.1.1 84401 1of1A 376 0.006334 c.37.1.1 103924 2qt1A 207 0.006504 2axpA 173 0.006662 c.37.1.1 127497 1zm7A 230 0.007331 2cdnA 201 0.009094 c.37.1.1 130289 1e2kA 331 0.009356 c.37.1.1 31854 2vp4A 230 0.009880 1vhtA 218 0.01009 c.37.1.1 100700 1e4yA 214 0.01213 c.37.1.1,g.41.2.1 31901,45181 1qhxA 178 0.01255 c.37.1.3 31936 2rgxA 206 0.01614 2ak3A 226 0.01928 c.37.1.1,g.41.2.1 31892,45193 3tmkA 216 0.02024 c.37.1.1 31920 1y63A 184 0.02111 c.37.1.1 116494 1ak2A 233 0.02363 c.37.1.1,g.41.2.1 31894,45195 3be4A 217 0.02385 2eu8A 216 0.02761 2f6rA 281 0.02948 1e6cA 173 0.03089 c.37.1.2 59296 1akyA 220 0.03176 c.37.1.1,g.41.2.1 31896,45197 2rhmA 193 0.03423 1zin 217 0.03492 1zinA 217 0.03774 c.37.1.1,g.41.2.1 31915,45178 2bdtA 189 0.03946 c.37.1.25 128344 1zd8A 227 0.04255 1ckeA 227 0.04489 c.37.1.1 31846 1kdoA 227 0.04670 c.37.1.1 68478 1nn5A 215 0.04744 c.37.1.1 85892 1jjvA 206 0.04905 c.37.1.1 71698 1viaA 175 0.05158 c.37.1.2 100754 2pt5A 168 0.05360 2pezA 179 0.05686 1knqA 175 0.05897 c.37.1.17 72786 2grjA 192 0.06406 1uj2A 252 0.06438 c.37.1.6 99452 2iyvA 184 0.07941 c.37.1.2 137812 1xrjA 261 0.08429 c.37.1.6 122256 2yvuA 186 0.09325 2g1kA 176 0.09913 c.37.1.2 134519 1rkbA 173 0.1386 c.37.1.1 111854 3c8uA 208 0.1408 1zuhA 168 0.1818 2qgnA 322 0.1867 1ltqA 301 0.3009 c.108.1.9,c.37.1.1 78208,78209 1rz3A 201 0.3947 c.37.1.6 98132 2ax4A 198 0.3984 1kagA 173 0.4998 c.37.1.2 72249 1ly1A 181 0.5144 c.37.1.1 74334 1m7gA 211 0.5417 c.37.1.4 78724 3crrA 323 0.6097 1gvnB 287 0.6439 c.37.1.21 76354 2p5tB 253 0.9376 1a7jA 290 1.622 c.37.1.6 31952 1dekA 241 2.579 c.37.1.1 31842 1l2tA 235 2.833 c.37.1.12 73514 1np6A 174 2.955 c.37.1.10 85954 1a7j 290 3.066 1xjcA 169 3.197 c.37.1.10 115387 1w5tA 412 3.378 a.4.5.11,c.37.1.20 114255,114256 2qm8A 337 3.600 2f1rA 171 3.710 1lv7A 257 4.258 c.37.1.20 78232 2ze7A 253 4.278 1ji0A 240 4.897 c.37.1.12 71665 1xx6A 191 5.386 c.37.1.24,g.39.1.14 116139,116140 1vplA 256 5.733 c.37.1.12 113966 2p67A 341 5.946 1g6hA 257 6.583 c.37.1.12 60318 2v26A 784 7.819 2pmkA 243 7.851 2ff7A 247 7.861 c.37.1.12 133377 2orwA 184 7.972 2pzeA 229 7.988 2cbzA 237 8.091 1sxjA 511 8.121 a.80.1.1,c.37.1.20 106081,106082 1a5tA 334 8.611 a.80.1.1,c.37.1.20 18450,32423 1a5t 334 8.789 2fnaA 357 9.020 a.4.5.11,c.37.1.20 133809,133810 1gl6A 436 9.159 c.37.1.11 70259 2ixeA 271 9.206 2nq2C 253 9.307 2pcjA 224 9.310 1yqtA 538 9.656 2d2eA 250 10.14 1fnnA 389 10.20 a.4.5.11,c.37.1.20 16129,32426 3b9qA 302 10.68 2ihyA 279 11.05 2cvhA 220 12.01 2pjzA 263 12.44 2gzaA 361 13.23 2j69A 695 13.97 1e9rA 437 15.55 c.37.1.11 64827 2vhjA 331 16.02 2o5vA 359 16.26 1g291 372 16.89 1in4A 334 16.90 a.4.5.11,c.37.1.20 62597,62598 1x6vA 630 17.24 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 1bifA 469 17.37 c.37.1.7,c.60.1.4 31961,34003 2eyuA 261 17.66 2c8vA 288 17.78 c.37.1.10 130128 1in6A 334 17.86 a.4.5.11,c.37.1.20 62601,62602 1nlfA 279 18.32 c.37.1.11 85850 2it1A 362 18.89 1xewX 182 18.94 c.37.1.12 115235 1xd8A 289 19.11 2ga8A 359 19.17 2gjsA 176 19.27 c.37.1.8 135287 2hf9A 226 19.65 1g6oA 330 19.84 c.37.1.11 32430 1zu4A 320 19.86 2gxaA 274 20.20 1zj6A 187 20.77 c.37.1.8 125145 2dpxA 174 20.86 2r44A 331 20.97 2pt7A 330 21.12 1g8pA 350 21.13 c.37.1.20 60376 1pujA 282 21.24 c.37.1.8 88294 1sgwA 214 21.31 c.37.1.12 105541 2b8tA 223 21.41 c.37.1.24,g.39.1.14 128109,128110 2qu8A 228 21.44 2qy9A 309 22.11 1d2nA 272 22.30 c.37.1.20 32428 1b0uA 262 22.71 c.37.1.12 32370 2dkhA 639 22.74 2qi9C 249 23.20 1tueA 212 23.20 c.37.1.20 107323 1odfA 290 23.38 c.37.1.6 92782 1wf3A 301 23.86 c.37.1.8,d.52.3.1 114574,114575 2r2aA 199 24.00 1wcv1 257 24.23 1w79A 489 24.24 e.3.1.3 120680 1z47A 355 24.41 2dr3A 247 25.25 1cp2A 269 25.32 c.37.1.10 32269 1ju2A 536 26.13 c.3.1.2,d.16.1.1 77169,77170 1ye8A 178 26.25 c.37.1.11 123010 1g41A 444 26.29 c.37.1.20 32450 1njgA 250 26.36 c.37.1.20 85785 1bif 469 26.51 2afhE 289 27.87 c.37.1.10 126683 2q3hA 201 28.24 1rj9A 304 28.68 a.24.13.1,c.37.1.10 97553,97554 1sxjC 340 31.11 a.80.1.1,c.37.1.20 106085,106086 1f6bA 198 31.65 c.37.1.8 64986 2i1qA 322 32.18 a.60.4.1,c.37.1.11 136984,136985 1uxoA 192 32.40 c.69.1.31 108121 3bs4A 260 33.90 1u0jA 267 34.75 c.37.1.20 107546 1sxjE 354 36.31 a.80.1.1,c.37.1.20 106089,106090 1z08A 170 37.37 c.37.1.8 124303 1m7bA 184 38.07 c.37.1.8 74572 2bekA 257 38.58 2gdjA 264 39.58 c.37.1.11 135018 2rebA 352 40.22 c.37.1.11,d.48.1.1 32282,38767 1ky3A 182 40.32 c.37.1.8 73193 1ko7A 314 40.40 c.98.2.1,c.91.1.2 72797,72798 1ls1A 295 41.08 a.24.13.1,c.37.1.10 78170,78171 1h65A 270 41.47 c.37.1.8 65640 1udxA 416 42.66 b.117.1.1,c.37.1.8,d.242.1.1 99228,99229,99230 2akaB 299 42.93 c.37.1.8 126914 1w7jA 795 43.72 b.34.3.1,c.37.1.9 120688,120689 2qjwA 176 44.27 1u94A 356 46.14 c.37.1.11,d.48.1.1 107743,107744 1sviA 195 46.56 c.37.1.8 106048 1cr1A 296 47.65 c.37.1.11 32286 1mh1A 186 47.66 c.37.1.8 32002 2q3fA 181 48.63 1vdzA 588 49.06 2bcgY 206 49.81 c.37.1.8 128285 1eg7A 557 50.93 c.37.1.10 32241 1htwA 158 51.24 c.37.1.18 71083 1xp8A 366 53.32 c.37.1.11,d.48.1.1 115735,115736 3c5cA 187 54.07 2og2A 359 54.39 1ionA 243 54.54 c.37.1.10 62633 1g3qA 237 54.97 c.37.1.10 60237 2zejA 184 55.21 1w4rA 195 55.25 2aqjA 538 55.25 1w9iA 770 55.72 2qgzA 308 56.48 2oblA 347 58.07 1tq4A 413 60.53 c.37.1.8 107201 2gcoA 201 61.35 3bfkA 181 62.51 1p3dA 475 63.40 c.5.1.1,c.59.1.1,c.72.2.1 87728,87729,87730 2gj8A 172 63.41 c.37.1.8 135270 1kshA 186 63.48 c.37.1.8 72914 2hxsA 178 65.30 3b9pA 297 66.20 1vlqA 337 66.73 c.69.1.25 108848 2chgA 226 67.37 3bwdD 182 67.55 3bblA 287 69.79 2og1A 286 70.31 2rexB 197 70.55 2bbsA 290 71.77 1j8mF 297 72.58 a.24.13.1,c.37.1.10 62742,62743 1ufoA 238 72.76 c.69.1.27 99344 1r8sA 164 72.79 c.37.1.8 97247 1puiA 210 73.37 c.37.1.8 88292 2e87A 357 74.71 1yzqA 170 75.06 c.37.1.8 124286 2dbyA 368 75.51 3tglA 269 76.56 c.69.1.17 34733 1a0dA 440 79.17 c.1.15.3 29533 2a5dA 175 80.25 c.37.1.8 126172 1z2aA 168 81.26 c.37.1.8 124374 2h17A 181 81.72 2fz4A 237 82.58 c.37.1.19 134419 1qhlA 227 86.63 c.37.1.12 32382 1uptA 171 87.47 c.37.1.8 99767 1sq5A 308 88.57 c.37.1.6 105882 1f2tA 149 89.40 c.37.1.12 32373