# List of top-scoring protein chains for t06-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1gky 187 3.64e-07 1kjwA 295 6.23e-07 b.34.2.1,c.37.1.1 68643,68644 1znwA 207 8.40e-07 c.37.1.1 125412 1ex7A 186 1.48e-06 c.37.1.1 59537 1kgdA 180 1.66e-06 c.37.1.1 68582 2j41A 207 2.74e-06 2qorA 204 3.32e-06 2pbrA 195 1.40e-05 4tmkA 213 3.31e-05 c.37.1.1 31930 2an9A 207 4.30e-05 c.37.1.1 127037 1s96A 219 4.79e-05 c.37.1.1 98740 1gtvA 214 8.44e-05 c.37.1.1 70537 2z0hA 197 0.000107 1ukzA 203 0.000174 c.37.1.1 31840 2ccjA 205 0.000189 1t0hB 224 0.000211 c.37.1.1 106208 1ukz 203 0.000236 2c95A 196 0.000251 1p6xA 334 0.000266 c.37.1.1 94195 1p5zB 263 0.000295 c.37.1.1 87815 1of1A 376 0.000431 c.37.1.1 103924 1e2kA 331 0.000456 c.37.1.1 31854 1qf9A 194 0.000703 c.37.1.1 31848 2bwjA 199 0.000894 1ki9A 192 0.001061 c.37.1.1 84404 1khtA 192 0.001205 c.37.1.1 84401 1zm7A 230 0.001310 2qt1A 207 0.001595 2plrA 213 0.001665 1vhtA 218 0.001742 c.37.1.1 100700 2vp4A 230 0.001932 2cdnA 201 0.002147 c.37.1.1 130289 2rgxA 206 0.002379 2axpA 173 0.002965 c.37.1.1 127497 2ak3A 226 0.003273 c.37.1.1,g.41.2.1 31892,45193 1akyA 220 0.003839 c.37.1.1,g.41.2.1 31896,45197 3be4A 217 0.004098 1y63A 184 0.004695 c.37.1.1 116494 1e4yA 214 0.004729 c.37.1.1,g.41.2.1 31901,45181 1qhxA 178 0.005287 c.37.1.3 31936 1zin 217 0.006800 1zd8A 227 0.006994 2f6rA 281 0.007070 1ak2A 233 0.007095 c.37.1.1,g.41.2.1 31894,45195 1zinA 217 0.007685 c.37.1.1,g.41.2.1 31915,45178 1e6cA 173 0.008304 c.37.1.2 59296 1nn5A 215 0.008736 c.37.1.1 85892 3tmkA 216 0.009876 c.37.1.1 31920 2rhmA 193 0.01018 1jjvA 206 0.01095 c.37.1.1 71698 2eu8A 216 0.01110 1kdoA 227 0.01155 c.37.1.1 68478 2grjA 192 0.01321 2bdtA 189 0.01396 c.37.1.25 128344 1ckeA 227 0.01647 c.37.1.1 31846 1viaA 175 0.01906 c.37.1.2 100754 1uj2A 252 0.02124 c.37.1.6 99452 2iyvA 184 0.02965 c.37.1.2 137812 2pt5A 168 0.02985 2pezA 179 0.03041 1knqA 175 0.03296 c.37.1.17 72786 2g1kA 176 0.03461 c.37.1.2 134519 1xrjA 261 0.03639 c.37.1.6 122256 3c8uA 208 0.04205 2yvuA 186 0.04746 1rkbA 173 0.05888 c.37.1.1 111854 1zuhA 168 0.07415 1ltqA 301 0.1042 c.108.1.9,c.37.1.1 78208,78209 1rz3A 201 0.1324 c.37.1.6 98132 3crrA 323 0.2210 1gvnB 287 0.2893 c.37.1.21 76354 1m7gA 211 0.3210 c.37.1.4 78724 2ax4A 198 0.3347 1dekA 241 0.3712 c.37.1.1 31842 1kagA 173 0.3906 c.37.1.2 72249 2qgnA 322 0.4291 2p5tB 253 0.6890 1ly1A 181 0.7037 c.37.1.1 74334 1a7jA 290 0.7780 c.37.1.6 31952 1l2tA 235 1.102 c.37.1.12 73514 2f1rA 171 1.363 1xx6A 191 1.432 c.37.1.24,g.39.1.14 116139,116140 1np6A 174 1.473 c.37.1.10 85954 1xjcA 169 1.549 c.37.1.10 115387 1a7j 290 1.622 1w5tA 412 1.787 a.4.5.11,c.37.1.20 114255,114256 1lv7A 257 2.656 c.37.1.20 78232 2ze7A 253 2.684 2pzeA 229 2.729 2cbzA 237 3.002 1yqtA 538 3.316 2pcjA 224 4.038 2pmkA 243 4.068 2d2eA 250 4.865 2orwA 184 4.963 1vplA 256 5.055 c.37.1.12 113966 2ga8A 359 5.504 2ihyA 279 5.711 2ff7A 247 5.796 c.37.1.12 133377 1a5t 334 5.817 1g6hA 257 6.185 c.37.1.12 60318 1in4A 334 6.459 a.4.5.11,c.37.1.20 62597,62598 1sq5A 308 6.520 c.37.1.6 105882 2eyuA 261 6.573 2nq2C 253 6.938 2ixeA 271 7.079 2fnaA 357 7.117 a.4.5.11,c.37.1.20 133809,133810 2bbsA 290 7.546 1b0uA 262 7.825 c.37.1.12 32370 2vhjA 331 7.857 1u94A 356 8.213 c.37.1.11,d.48.1.1 107743,107744 1fnnA 389 8.470 a.4.5.11,c.37.1.20 16129,32426 2p67A 341 8.855 1d2nA 272 9.256 c.37.1.20 32428 1a5tA 334 9.346 a.80.1.1,c.37.1.20 18450,32423 2pjzA 263 9.374 2qi9C 249 9.405 1rj9A 304 9.671 a.24.13.1,c.37.1.10 97553,97554 2gzaA 361 10.18 1xewX 182 10.58 c.37.1.12 115235 1g291 372 10.71 2qy9A 309 10.75 2r2aA 199 10.88 2oap1 511 11.23 1g8pA 350 11.66 c.37.1.20 60376 2og2A 359 12.07 2qm8A 337 12.07 1bifA 469 12.07 c.37.1.7,c.60.1.4 31961,34003 1xd8A 289 12.13 1in6A 334 12.62 a.4.5.11,c.37.1.20 62601,62602 2it1A 362 12.82 1ji0A 240 13.09 c.37.1.12 71665 1sgwA 214 13.46 c.37.1.12 105541 2b8tA 223 13.67 c.37.1.24,g.39.1.14 128109,128110 2c8vA 288 14.22 c.37.1.10 130128 1sxjA 511 14.35 a.80.1.1,c.37.1.20 106081,106082 1g6oA 330 14.50 c.37.1.11 32430 1z47A 355 15.08 1zu4A 320 15.27 2r44A 331 15.33 1wcv1 257 15.75 2gjsA 176 15.76 c.37.1.8 135287 2afhE 289 15.89 c.37.1.10 126683 1knxA 312 15.90 c.98.2.1,c.91.1.2 77459,77460 2cvhA 220 15.99 1pujA 282 16.66 c.37.1.8 88294 1x6vA 630 16.96 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 2bekA 257 17.02 1w4rA 195 17.10 1tueA 212 17.45 c.37.1.20 107323 2bjvA 265 17.88 2dpxA 174 18.78 2q3hA 201 19.60 3b9qA 302 20.44 1njgA 250 20.71 c.37.1.20 85785 1ye8A 178 21.08 c.37.1.11 123010 2c9oA 456 21.16 1u0jA 267 21.42 c.37.1.20 107546 1gl6A 436 21.57 c.37.1.11 70259 1uxoA 192 22.21 c.69.1.31 108121 2pt7A 330 22.28 1f6bA 198 22.97 c.37.1.8 64986 2i1qA 322 23.58 a.60.4.1,c.37.1.11 136984,136985 1ky3A 182 24.02 c.37.1.8 73193 1z08A 170 24.19 c.37.1.8 124303 2hf9A 226 24.50 2dr3A 247 24.59 1odfA 290 25.16 c.37.1.6 92782 1cp2A 269 26.43 c.37.1.10 32269 1ls1A 295 26.56 a.24.13.1,c.37.1.10 78170,78171 1m7bA 184 27.23 c.37.1.8 74572 1u9iA 519 27.39 c.37.1.11,c.37.1.11 119637,119638 1bif 469 27.42 1e9rA 437 29.71 c.37.1.11 64827 1mh1A 186 29.96 c.37.1.8 32002 1g41A 444 30.10 c.37.1.20 32450 1zj6A 187 31.24 c.37.1.8 125145 2qjwA 176 33.64 1ko7A 314 33.88 c.98.2.1,c.91.1.2 72797,72798 1g3qA 237 34.45 c.37.1.10 60237 2oblA 347 36.16 1j8mF 297 37.27 a.24.13.1,c.37.1.10 62742,62743 2akaB 299 37.34 c.37.1.8 126914 2rexB 197 37.37 1h65A 270 38.37 c.37.1.8 65640 1ionA 243 38.60 c.37.1.10 62633 2bcgY 206 38.70 c.37.1.8 128285 1byi 224 39.04 2zadA 345 39.17 2gj8A 172 43.19 c.37.1.8 135270 1oxxK 353 43.62 b.40.6.3,c.37.1.12 93715,93716 2chgA 226 43.71 3bosA 242 44.05 1sxjC 340 44.56 a.80.1.1,c.37.1.20 106085,106086 1htwA 158 45.40 c.37.1.18 71083 2zejA 184 45.66 3c5cA 187 46.01 2gcoA 201 46.02 1ufoA 238 46.34 c.69.1.27 99344 2qu8A 228 46.62 2fz4A 237 50.22 c.37.1.19 134419 1cr1A 296 50.41 c.37.1.11 32286 1nijA 318 50.47 c.37.1.10,d.237.1.1 85741,85742 2qgzA 308 50.80 2gxaA 274 51.65 1tq4A 413 52.10 c.37.1.8 107201 1sviA 195 52.53 c.37.1.8 106048 1r8sA 164 53.26 c.37.1.8 97247 1kshA 186 53.35 c.37.1.8 72914 3tglA 269 54.94 c.69.1.17 34733 3bwdD 182 56.92 3bfkA 181 57.09 1wf3A 301 57.30 c.37.1.8,d.52.3.1 114574,114575 1qhlA 227 58.24 c.37.1.12 32382 2dpyA 438 58.27 1yzqA 170 58.58 c.37.1.8 124286 1sxjE 354 59.71 a.80.1.1,c.37.1.20 106089,106090 1xp8A 366 59.80 c.37.1.11,d.48.1.1 115735,115736 2v26A 784 60.39 1w9iA 770 60.83 2a5yB 549 60.94 1w44A 331 61.35 c.37.1.11 114147 2p65A 187 62.36 1z2aA 168 62.38 c.37.1.8 124374 2q3fA 181 64.27 1f2tA 149 64.54 c.37.1.12 32373 2bkhA 814 65.59 2a5dA 175 68.71 c.37.1.8 126172 2hxsA 178 69.84 1tca 317 71.08 1nlfA 279 72.49 c.37.1.11 85850 1uptA 171 73.09 c.37.1.8 99767 2h17A 181 73.36 2bmeA 186 74.11 c.37.1.8 128790 1fzqA 181 76.30 c.37.1.8 32060 2ozeA 298 77.08 1jalA 363 78.93 c.37.1.8,d.15.10.2 84138,84139 2p5sA 199 79.53 1x3sA 195 84.19 c.37.1.8 121670 2gf9A 189 86.17 1l7aA 318 87.69 c.69.1.25 77772 1ihuA 589 87.75 c.37.1.10,c.37.1.10 62394,62395 2rebA 352 88.04 c.37.1.11,d.48.1.1 32282,38767 2g6bA 180 89.50 c.37.1.8 134701