# List of top-scoring protein chains for t06-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1gky 187 4.47e-07 1kjwA 295 4.68e-07 b.34.2.1,c.37.1.1 68643,68644 1znwA 207 9.68e-07 c.37.1.1 125412 1kgdA 180 1.41e-06 c.37.1.1 68582 2j41A 207 1.46e-06 1ex7A 186 2.05e-06 c.37.1.1 59537 2qorA 204 2.26e-06 2pbrA 195 1.75e-05 1s96A 219 2.44e-05 c.37.1.1 98740 4tmkA 213 2.95e-05 c.37.1.1 31930 2an9A 207 3.67e-05 c.37.1.1 127037 2z0hA 197 0.000134 1ukzA 203 0.000136 c.37.1.1 31840 1gtvA 214 0.000141 c.37.1.1 70537 2c95A 196 0.000199 1ukz 203 0.000228 2ccjA 205 0.000257 1p6xA 334 0.000360 c.37.1.1 94195 1t0hB 224 0.000366 c.37.1.1 106208 1p5zB 263 0.000382 c.37.1.1 87815 1qf9A 194 0.000433 c.37.1.1 31848 1of1A 376 0.000442 c.37.1.1 103924 1e2kA 331 0.000612 c.37.1.1 31854 2bwjA 199 0.000615 1ki9A 192 0.001185 c.37.1.1 84404 2cdnA 201 0.001616 c.37.1.1 130289 2plrA 213 0.001729 2qt1A 207 0.001834 1zm7A 230 0.002091 2vp4A 230 0.002819 1akyA 220 0.002858 c.37.1.1,g.41.2.1 31896,45197 2rgxA 206 0.003425 1e4yA 214 0.003491 c.37.1.1,g.41.2.1 31901,45181 1vhtA 218 0.003491 c.37.1.1 100700 1khtA 192 0.003677 c.37.1.1 84401 2ak3A 226 0.003791 c.37.1.1,g.41.2.1 31892,45193 2axpA 173 0.004413 c.37.1.1 127497 3be4A 217 0.004890 1zin 217 0.005066 2f6rA 281 0.005723 1y63A 184 0.006162 c.37.1.1 116494 1ak2A 233 0.006420 c.37.1.1,g.41.2.1 31894,45195 3tmkA 216 0.006914 c.37.1.1 31920 1zinA 217 0.007928 c.37.1.1,g.41.2.1 31915,45178 2eu8A 216 0.008236 1qhxA 178 0.008331 c.37.1.3 31936 1zd8A 227 0.008786 2bdtA 189 0.01039 c.37.1.25 128344 1nn5A 215 0.01130 c.37.1.1 85892 1kdoA 227 0.01252 c.37.1.1 68478 2rhmA 193 0.01356 1ckeA 227 0.01819 c.37.1.1 31846 1uj2A 252 0.01833 c.37.1.6 99452 1viaA 175 0.02015 c.37.1.2 100754 1jjvA 206 0.02088 c.37.1.1 71698 1e6cA 173 0.02347 c.37.1.2 59296 2pt5A 168 0.03071 2iyvA 184 0.03094 c.37.1.2 137812 2grjA 192 0.03225 1xrjA 261 0.03530 c.37.1.6 122256 2yvuA 186 0.03719 2g1kA 176 0.04143 c.37.1.2 134519 2pezA 179 0.04199 1knqA 175 0.04275 c.37.1.17 72786 3c8uA 208 0.05734 1rkbA 173 0.08782 c.37.1.1 111854 1zuhA 168 0.09339 1ltqA 301 0.1671 c.108.1.9,c.37.1.1 78208,78209 1m7gA 211 0.1839 c.37.1.4 78724 3crrA 323 0.1870 2qgnA 322 0.2539 1kagA 173 0.3016 c.37.1.2 72249 1gvnB 287 0.3211 c.37.1.21 76354 1rz3A 201 0.4029 c.37.1.6 98132 2ax4A 198 0.4469 1ly1A 181 0.5630 c.37.1.1 74334 1a7jA 290 0.6372 c.37.1.6 31952 1dekA 241 0.8638 c.37.1.1 31842 1a7j 290 0.9600 2f1rA 171 1.004 1l2tA 235 1.141 c.37.1.12 73514 2p5tB 253 1.562 1xx6A 191 1.579 c.37.1.24,g.39.1.14 116139,116140 1w5tA 412 1.872 a.4.5.11,c.37.1.20 114255,114256 1np6A 174 1.902 c.37.1.10 85954 2orwA 184 2.062 1xjcA 169 2.082 c.37.1.10 115387 2pzeA 229 2.375 2pcjA 224 3.728 2pmkA 243 4.149 1lv7A 257 4.332 c.37.1.20 78232 2cbzA 237 4.374 2ze7A 253 4.434 2d2eA 250 4.625 2nq2C 253 4.972 1yqtA 538 5.401 1g6hA 257 5.513 c.37.1.12 60318 2ihyA 279 5.770 2ff7A 247 6.639 c.37.1.12 133377 1ji0A 240 6.709 c.37.1.12 71665 2ga8A 359 7.091 2ixeA 271 7.213 1vplA 256 7.255 c.37.1.12 113966 2qi9C 249 7.414 1xewX 182 7.711 c.37.1.12 115235 2bbsA 290 8.047 1rj9A 304 8.720 a.24.13.1,c.37.1.10 97553,97554 1b0uA 262 8.912 c.37.1.12 32370 1in4A 334 9.080 a.4.5.11,c.37.1.20 62597,62598 1d2nA 272 9.877 c.37.1.20 32428 2fnaA 357 10.21 a.4.5.11,c.37.1.20 133809,133810 2vhjA 331 10.31 2p67A 341 10.70 1sq5A 308 11.81 c.37.1.6 105882 2gzaA 361 12.20 1z47A 355 12.35 1a5t 334 13.55 2pjzA 263 13.71 1a5tA 334 14.35 a.80.1.1,c.37.1.20 18450,32423 1fnnA 389 14.41 a.4.5.11,c.37.1.20 16129,32426 1g291 372 14.86 1sgwA 214 15.29 c.37.1.12 105541 2r2aA 199 15.41 1ky3A 182 16.66 c.37.1.8 73193 2akaB 299 16.91 c.37.1.8 126914 1e9rA 437 16.99 c.37.1.11 64827 1knxA 312 17.64 c.98.2.1,c.91.1.2 77459,77460 2it1A 362 17.74 1bifA 469 17.93 c.37.1.7,c.60.1.4 31961,34003 1zu4A 320 19.47 2dpxA 174 19.72 2oap1 511 20.33 2b8tA 223 20.74 c.37.1.24,g.39.1.14 128109,128110 2qy9A 309 21.42 1w4rA 195 21.80 2r44A 331 22.06 1wcv1 257 22.76 2dr3A 247 23.01 2q3hA 201 23.02 2bekA 257 23.91 2cvhA 220 25.30 2eyuA 261 25.40 2gjsA 176 25.62 c.37.1.8 135287 1ufoA 238 26.19 c.69.1.27 99344 1mh1A 186 26.50 c.37.1.8 32002 1h65A 270 26.71 c.37.1.8 65640 1w44A 331 27.29 c.37.1.11 114147 1g41A 444 28.44 c.37.1.20 32450 1gl6A 436 28.63 c.37.1.11 70259 1z08A 170 28.69 c.37.1.8 124303 1bif 469 28.77 1tq4A 413 28.92 c.37.1.8 107201 1in6A 334 28.99 a.4.5.11,c.37.1.20 62601,62602 1wf3A 301 29.10 c.37.1.8,d.52.3.1 114574,114575 1g8pA 350 29.30 c.37.1.20 60376 2hf9A 226 29.51 1u9iA 519 29.57 c.37.1.11,c.37.1.11 119637,119638 1tueA 212 30.44 c.37.1.20 107323 1odfA 290 30.45 c.37.1.6 92782 1m7bA 184 31.38 c.37.1.8 74572 1u94A 356 31.66 c.37.1.11,d.48.1.1 107743,107744 2og2A 359 31.75 2qjwA 176 31.94 1zj6A 187 32.70 c.37.1.8 125145 1sxjA 511 32.77 a.80.1.1,c.37.1.20 106081,106082 1uxoA 192 35.90 c.69.1.31 108121 3b9qA 302 36.57 1pujA 282 36.93 c.37.1.8 88294 1g6oA 330 37.61 c.37.1.11 32430 1qhlA 227 38.23 c.37.1.12 32382 1oxxK 353 38.34 b.40.6.3,c.37.1.12 93715,93716 2og1A 286 39.46 2pt7A 330 40.30 2qgzA 308 40.50 1cr1A 296 46.72 c.37.1.11 32286 1b6g 310 46.85 1njgA 250 47.70 c.37.1.20 85785 1tca 317 48.31 2fz4A 237 49.01 c.37.1.19 134419 2bjvA 265 50.12 1brt 277 50.29 1ls1A 295 54.45 a.24.13.1,c.37.1.10 78170,78171 3bosA 242 54.55 1sxjE 354 54.55 a.80.1.1,c.37.1.20 106089,106090 2c9oA 456 54.89 2i1qA 322 55.41 a.60.4.1,c.37.1.11 136984,136985 1ko7A 314 58.72 c.98.2.1,c.91.1.2 72797,72798 2qu8A 228 58.83 1w9iA 770 60.13 2bcgY 206 60.24 c.37.1.8 128285 2gj8A 172 60.74 c.37.1.8 135270 1l7aA 318 62.35 c.69.1.25 77772 3b9pA 297 64.12 2c8vA 288 65.11 c.37.1.10 130128 2afhE 289 65.89 c.37.1.10 126683 1byi 224 66.83 2ozeA 298 68.61 2rexB 197 69.64 2a5dA 175 70.54 c.37.1.8 126172 1ye8A 178 71.75 c.37.1.11 123010 1nijA 318 72.77 c.37.1.10,d.237.1.1 85741,85742 3c5cA 187 73.11 2r8rA 228 74.42 1f2tA 149 75.65 c.37.1.12 32373 1z06A 189 76.19 c.37.1.8 124301 2p65A 187 76.56 2gcoA 201 77.19 1j8mF 297 77.45 a.24.13.1,c.37.1.10 62742,62743 1x6vA 630 77.81 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 2hu5A 582 80.20 b.69.7.2,c.69.1.33 136763,136764 1g3qA 237 80.71 c.37.1.10 60237 2pc8A 400 81.18 2zadA 345 81.72 1xd8A 289 83.47 1htwA 158 85.44 c.37.1.18 71083 2chgA 226 88.81 2g6bA 180 89.06 c.37.1.8 134701