# List of top-scoring protein chains for t06-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1gky 187 5.91e-07 1kjwA 295 7.78e-07 b.34.2.1,c.37.1.1 68643,68644 1znwA 207 1.06e-06 c.37.1.1 125412 2j41A 207 2.34e-06 1kgdA 180 2.66e-06 c.37.1.1 68582 2qorA 204 2.79e-06 1ex7A 186 2.84e-06 c.37.1.1 59537 2pbrA 195 1.41e-05 4tmkA 213 2.55e-05 c.37.1.1 31930 1s96A 219 3.02e-05 c.37.1.1 98740 2an9A 207 3.76e-05 c.37.1.1 127037 1gtvA 214 0.000118 c.37.1.1 70537 1ukzA 203 0.000156 c.37.1.1 31840 2z0hA 197 0.000156 2c95A 196 0.000221 1ukz 203 0.000231 1p5zB 263 0.000278 c.37.1.1 87815 2ccjA 205 0.000302 1of1A 376 0.000336 c.37.1.1 103924 2bwjA 199 0.000375 1p6xA 334 0.000425 c.37.1.1 94195 1t0hB 224 0.000444 c.37.1.1 106208 1e2kA 331 0.000462 c.37.1.1 31854 1qf9A 194 0.000497 c.37.1.1 31848 1ki9A 192 0.001102 c.37.1.1 84404 2cdnA 201 0.001235 c.37.1.1 130289 2qt1A 207 0.001820 2plrA 213 0.002329 1zm7A 230 0.002333 2vp4A 230 0.002393 1akyA 220 0.002719 c.37.1.1,g.41.2.1 31896,45197 2ak3A 226 0.002749 c.37.1.1,g.41.2.1 31892,45193 1e4yA 214 0.002959 c.37.1.1,g.41.2.1 31901,45181 1vhtA 218 0.003007 c.37.1.1 100700 2rgxA 206 0.003254 1khtA 192 0.003675 c.37.1.1 84401 2axpA 173 0.003729 c.37.1.1 127497 1zin 217 0.004212 1ak2A 233 0.004325 c.37.1.1,g.41.2.1 31894,45195 1y63A 184 0.004384 c.37.1.1 116494 3be4A 217 0.004401 2f6rA 281 0.005803 1zd8A 227 0.006059 2eu8A 216 0.006767 1zinA 217 0.008443 c.37.1.1,g.41.2.1 31915,45178 1qhxA 178 0.009671 c.37.1.3 31936 1nn5A 215 0.01062 c.37.1.1 85892 1viaA 175 0.01370 c.37.1.2 100754 2rhmA 193 0.01376 3tmkA 216 0.01543 c.37.1.1 31920 2bdtA 189 0.01549 c.37.1.25 128344 1kdoA 227 0.01563 c.37.1.1 68478 1uj2A 252 0.01567 c.37.1.6 99452 1ckeA 227 0.01588 c.37.1.1 31846 1e6cA 173 0.01625 c.37.1.2 59296 1jjvA 206 0.01739 c.37.1.1 71698 2grjA 192 0.01853 1knqA 175 0.02067 c.37.1.17 72786 2iyvA 184 0.02137 c.37.1.2 137812 2pezA 179 0.02261 2yvuA 186 0.02688 2g1kA 176 0.02737 c.37.1.2 134519 2pt5A 168 0.02811 1xrjA 261 0.03114 c.37.1.6 122256 3c8uA 208 0.04271 1rkbA 173 0.05073 c.37.1.1 111854 1zuhA 168 0.08351 1ltqA 301 0.1471 c.108.1.9,c.37.1.1 78208,78209 1m7gA 211 0.1624 c.37.1.4 78724 1rz3A 201 0.1764 c.37.1.6 98132 2qgnA 322 0.1792 3crrA 323 0.1842 2ax4A 198 0.2951 1kagA 173 0.3018 c.37.1.2 72249 1gvnB 287 0.3561 c.37.1.21 76354 1ly1A 181 0.3651 c.37.1.1 74334 1a7jA 290 0.4623 c.37.1.6 31952 1dekA 241 0.6527 c.37.1.1 31842 2p5tB 253 0.7748 1l2tA 235 0.8598 c.37.1.12 73514 1a7j 290 1.059 2f1rA 171 1.077 1xjcA 169 1.125 c.37.1.10 115387 1xx6A 191 1.325 c.37.1.24,g.39.1.14 116139,116140 1w5tA 412 1.422 a.4.5.11,c.37.1.20 114255,114256 2orwA 184 1.460 1np6A 174 1.566 c.37.1.10 85954 2pzeA 229 2.873 2cbzA 237 2.889 2pcjA 224 3.188 2nq2C 253 3.371 1g6hA 257 3.468 c.37.1.12 60318 2pmkA 243 3.692 1yqtA 538 3.703 2d2eA 250 3.924 1ji0A 240 4.009 c.37.1.12 71665 1lv7A 257 4.025 c.37.1.20 78232 2ze7A 253 4.032 2ihyA 279 4.222 2qi9C 249 4.259 1vplA 256 4.919 c.37.1.12 113966 2ixeA 271 5.425 1in4A 334 5.568 a.4.5.11,c.37.1.20 62597,62598 2ga8A 359 5.582 1rj9A 304 6.434 a.24.13.1,c.37.1.10 97553,97554 1sgwA 214 6.617 c.37.1.12 105541 2ff7A 247 6.731 c.37.1.12 133377 1xewX 182 7.715 c.37.1.12 115235 1d2nA 272 7.927 c.37.1.20 32428 2bbsA 290 7.965 2fnaA 357 8.061 a.4.5.11,c.37.1.20 133809,133810 2pjzA 263 8.348 2r2aA 199 8.457 1b0uA 262 8.492 c.37.1.12 32370 1g291 372 8.677 2vhjA 331 8.772 1z47A 355 8.782 2r44A 331 8.845 2p67A 341 9.390 1sq5A 308 9.794 c.37.1.6 105882 2gzaA 361 10.07 1g6oA 330 10.29 c.37.1.11 32430 2it1A 362 10.30 1fnnA 389 10.58 a.4.5.11,c.37.1.20 16129,32426 2hf9A 226 11.30 1w4rA 195 11.61 2q3hA 201 11.71 2cvhA 220 11.88 1a5tA 334 12.10 a.80.1.1,c.37.1.20 18450,32423 1sxjA 511 12.22 a.80.1.1,c.37.1.20 106081,106082 1e9rA 437 12.48 c.37.1.11 64827 2eyuA 261 12.75 2b8tA 223 13.04 c.37.1.24,g.39.1.14 128109,128110 2qy9A 309 13.19 1zu4A 320 13.31 1bifA 469 13.45 c.37.1.7,c.60.1.4 31961,34003 1knxA 312 13.79 c.98.2.1,c.91.1.2 77459,77460 1gl6A 436 13.83 c.37.1.11 70259 1mh1A 186 14.06 c.37.1.8 32002 2akaB 299 14.14 c.37.1.8 126914 1h65A 270 14.25 c.37.1.8 65640 2oap1 511 14.49 1in6A 334 15.29 a.4.5.11,c.37.1.20 62601,62602 2dr3A 247 16.87 2gjsA 176 17.11 c.37.1.8 135287 1u94A 356 17.98 c.37.1.11,d.48.1.1 107743,107744 1wcv1 257 18.01 1m7bA 184 18.50 c.37.1.8 74572 1g8pA 350 18.73 c.37.1.20 60376 2dpxA 174 18.87 1oxxK 353 19.15 b.40.6.3,c.37.1.12 93715,93716 1pujA 282 19.39 c.37.1.8 88294 2pt7A 330 19.44 1tq4A 413 19.55 c.37.1.8 107201 1tueA 212 19.92 c.37.1.20 107323 2og2A 359 19.97 2c8vA 288 20.39 c.37.1.10 130128 1ky3A 182 20.58 c.37.1.8 73193 3b9qA 302 21.74 1a5t 334 21.81 1ko7A 314 21.96 c.98.2.1,c.91.1.2 72797,72798 2bekA 257 23.44 2afhE 289 24.57 c.37.1.10 126683 1zj6A 187 25.41 c.37.1.8 125145 1bif 469 25.49 1cr1A 296 26.16 c.37.1.11 32286 1sxjE 354 26.22 a.80.1.1,c.37.1.20 106089,106090 1w44A 331 26.40 c.37.1.11 114147 1odfA 290 26.52 c.37.1.6 92782 1ihuA 589 26.61 c.37.1.10,c.37.1.10 62394,62395 1wf3A 301 27.17 c.37.1.8,d.52.3.1 114574,114575 1u9iA 519 29.29 c.37.1.11,c.37.1.11 119637,119638 2qgzA 308 29.33 1g41A 444 30.00 c.37.1.20 32450 1njgA 250 30.81 c.37.1.20 85785 1z08A 170 32.57 c.37.1.8 124303 1sxjC 340 33.89 a.80.1.1,c.37.1.20 106085,106086 1uxoA 192 33.97 c.69.1.31 108121 2c9oA 456 34.59 1nlfA 279 34.79 c.37.1.11 85850 3bwdD 182 35.37 2i1qA 322 38.67 a.60.4.1,c.37.1.11 136984,136985 1htwA 158 38.92 c.37.1.18 71083 2rexB 197 39.36 2qjwA 176 40.48 2a5dA 175 40.61 c.37.1.8 126172 1w9iA 770 41.67 2v26A 784 42.31 1j8mF 297 43.67 a.24.13.1,c.37.1.10 62742,62743 2bjvA 265 43.68 2gcoA 201 44.31 1ufoA 238 45.33 c.69.1.27 99344 1f2tA 149 46.41 c.37.1.12 32373 1nijA 318 46.49 c.37.1.10,d.237.1.1 85741,85742 1ls1A 295 46.80 a.24.13.1,c.37.1.10 78170,78171 1f6bA 198 47.21 c.37.1.8 64986 1jbkA 195 48.44 c.37.1.20 71631 2oblA 347 48.83 2chgA 226 49.55 2gxaA 274 50.73 2dpyA 438 51.33 1byi 224 51.50 1xd8A 289 54.17 2bcgY 206 54.66 c.37.1.8 128285 2zejA 184 55.62 2zadA 345 57.09 3bosA 242 57.90 1g3qA 237 58.46 c.37.1.10 60237 2h17A 181 59.17 1qhlA 227 60.15 c.37.1.12 32382 1x6vA 630 60.25 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 2qu8A 228 61.52 2bkhA 814 61.58 1b6g 310 62.30 1tca 317 66.73 2og1A 286 67.13 1o3yA 166 67.62 c.37.1.8 86618 1ye8A 178 67.77 c.37.1.11 123010 1uptA 171 68.22 c.37.1.8 99767 2q3fA 181 68.40 2qm8A 337 68.93 2gj8A 172 69.97 c.37.1.8 135270 1fzqA 181 70.20 c.37.1.8 32060 1z06A 189 72.25 c.37.1.8 124301 3bs4A 260 74.09 1r8sA 164 75.44 c.37.1.8 97247 1xp8A 366 75.57 c.37.1.11,d.48.1.1 115735,115736 1cp2A 269 75.71 c.37.1.10 32269 2g6bA 180 76.63 c.37.1.8 134701 1kmqA 184 77.86 c.37.1.8 84412 3bh0A 315 78.64 3c5cA 187 78.97 2r8rA 228 79.68 1pjrA 724 79.79 c.37.1.19,c.37.1.19 32391,32392 2a5jA 191 80.22 c.37.1.8 126175 3b9pA 297 80.90 2a5yB 549 81.22 2e87A 357 82.36 2dbyA 368 83.03 1kshA 186 83.10 c.37.1.8 72914 1l7aA 318 84.29 c.69.1.25 77772 2fz4A 237 84.71 c.37.1.19 134419 1g8mA 593 87.67 c.24.1.3,c.97.1.4 60371,60372 1z2aA 168 89.90 c.37.1.8 124374