# List of top-scoring protein chains for t06-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1gky 187 0.7915 2qorA 204 0.8410 1ex7A 186 0.9745 c.37.1.1 59537 1znwA 207 1.143 c.37.1.1 125412 1s96A 219 1.431 c.37.1.1 98740 2an9A 207 1.726 c.37.1.1 127037 1qf9A 194 1.903 c.37.1.1 31848 2pbrA 195 2.170 4tmkA 213 2.543 c.37.1.1 31930 2ccjA 205 2.808 2plrA 213 3.131 2qt1A 207 3.345 2f6rA 281 3.703 1kgdA 180 3.718 c.37.1.1 68582 2bwjA 199 3.799 2j41A 207 4.125 1uj2A 252 4.427 c.37.1.6 99452 1xrjA 261 4.959 c.37.1.6 122256 1kjwA 295 4.975 b.34.2.1,c.37.1.1 68643,68644 1y63A 184 5.180 c.37.1.1 116494 1rkbA 173 5.290 c.37.1.1 111854 1ukzA 203 5.300 c.37.1.1 31840 2axpA 173 5.313 c.37.1.1 127497 2c95A 196 6.321 1kdoA 227 6.819 c.37.1.1 68478 1zin 217 6.834 1jjvA 206 7.046 c.37.1.1 71698 2cdnA 201 7.275 c.37.1.1 130289 1vhtA 218 7.397 c.37.1.1 100700 1ukz 203 7.546 1ckeA 227 7.914 c.37.1.1 31846 2rgxA 206 8.148 1qhxA 178 8.426 c.37.1.3 31936 1ak2A 233 8.726 c.37.1.1,g.41.2.1 31894,45195 1p5zB 263 9.069 c.37.1.1 87815 1ki9A 192 9.077 c.37.1.1 84404 2ak3A 226 9.106 c.37.1.1,g.41.2.1 31892,45193 1zinA 217 9.117 c.37.1.1,g.41.2.1 31915,45178 1e6cA 173 9.731 c.37.1.2 59296 1khtA 192 9.924 c.37.1.1 84401 1nn5A 215 10.75 c.37.1.1 85892 1akyA 220 12.73 c.37.1.1,g.41.2.1 31896,45197 3be4A 217 13.04 3c8uA 208 13.29 1p6xA 334 13.46 c.37.1.1 94195 2pt5A 168 14.02 1zd8A 227 14.54 2eu8A 216 14.96 2yvuA 186 15.77 2z0hA 197 17.08 1t0hB 224 17.44 c.37.1.1 106208 3tmkA 216 17.84 c.37.1.1 31920 1gtvA 214 20.06 c.37.1.1 70537 2bdtA 189 23.26 c.37.1.25 128344 2vp4A 230 25.15 1knqA 175 25.67 c.37.1.17 72786 1zm7A 230 26.82 2iyvA 184 26.96 c.37.1.2 137812 1e4yA 214 27.41 c.37.1.1,g.41.2.1 31901,45181 1viaA 175 28.99 c.37.1.2 100754 1zuhA 168 29.48 2qgnA 322 32.06 2g1kA 176 32.30 c.37.1.2 134519 1ky3A 182 35.29 c.37.1.8 73193 2grjA 192 38.90 2ax4A 198 42.87 3bfkA 181 46.77 1dekA 241 51.69 c.37.1.1 31842 1m7gA 211 52.61 c.37.1.4 78724 2a5jA 191 58.58 c.37.1.8 126175 2pezA 179 60.04 2fn4A 181 60.53 c.37.1.8 133806 1x1rA 178 61.97 c.37.1.8 121595 1of1A 376 62.50 c.37.1.1 103924 2ew1A 201 62.78 c.37.1.8 132446 1kagA 173 63.96 c.37.1.2 72249 2rhmA 193 64.56 1yrbA 262 65.34 c.37.1.10 123915 1xtqA 177 67.59 c.37.1.8 122297 1kpgA 287 69.38 c.66.1.18 68735 2rexB 197 69.82 2gf9A 189 70.21 2a35A 215 75.48 c.2.1.2 126072 1vg8A 207 79.19 c.37.1.8 108606 3crrA 323 79.41 2ga8A 359 79.59 1kaoA 167 80.88 c.37.1.8 32014 2f9lA 199 84.09 c.37.1.8 133166 1m7bA 184 84.25 c.37.1.8 74572 2bmeA 186 87.96 c.37.1.8 128790