# List of top-scoring protein chains for t04-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2pbrA 195 8.79e-07 1znwA 207 1.58e-06 c.37.1.1 125412 4tmkA 213 1.75e-06 c.37.1.1 31930 2j41A 207 2.96e-06 2qorA 204 3.39e-06 2ccjA 205 3.93e-06 2plrA 213 3.98e-06 1z6gA 218 4.29e-06 1p5zB 263 4.34e-06 c.37.1.1 87815 1z8fA 228 7.83e-06 1gtvA 214 1.25e-05 c.37.1.1 70537 2z0hA 197 1.34e-05 2bwjA 199 1.94e-05 1kjwA 295 2.80e-05 b.34.2.1,c.37.1.1 68643,68644 1ex7A 186 3.79e-05 c.37.1.1 59537 1s4qA 228 6.84e-05 c.37.1.1 98507 1ukzA 203 6.91e-05 c.37.1.1 31840 2cdnA 201 8.11e-05 c.37.1.1 130289 2vp4A 230 9.86e-05 2c95A 196 0.000107 1of1A 376 0.000199 c.37.1.1 103924 1ki9A 192 0.000225 c.37.1.1 84404 1p6xA 334 0.000255 c.37.1.1 94195 1e2kA 331 0.000256 c.37.1.1 31854 1qf9A 194 0.000268 c.37.1.1 31848 1ukz 203 0.000304 1oe0A 230 0.000348 c.37.1.1 92788 1vhtA 218 0.000392 c.37.1.1 100700 1zm7A 230 0.000415 1t0hB 224 0.000522 c.37.1.1 106208 1t3lA 337 0.000544 b.34.2.1,c.37.1.1 106358,106359 1qhiA 366 0.000650 c.37.1.1 31860 1y63A 184 0.001063 c.37.1.1 116494 2axpA 173 0.001102 c.37.1.1 127497 1gky 187 0.001325 3tmkA 216 0.001521 c.37.1.1 31920 1qhxA 178 0.002046 c.37.1.3 31936 2f6rA 281 0.002986 1knqA 175 0.003463 c.37.1.17 72786 1kdoA 227 0.003608 c.37.1.1 68478 1ckeA 227 0.003881 c.37.1.1 31846 1e6cA 173 0.004045 c.37.1.2 59296 1uj2A 252 0.004658 c.37.1.6 99452 1e4yA 214 0.004678 c.37.1.1,g.41.2.1 31901,45181 1khtA 192 0.004887 c.37.1.1 84401 1zd8A 227 0.005119 2rgxA 206 0.005520 1n3bA 216 0.008398 c.37.1.1 79959 2eu8A 216 0.009919 2qgnA 322 0.01106 2ax4A 198 0.01151 1zin 217 0.01152 2an9A 207 0.01167 c.37.1.1 127037 1jjvA 206 0.01177 c.37.1.1 71698 2g1kA 176 0.01220 c.37.1.2 134519 1kgdA 180 0.01231 c.37.1.1 68582 1ak2A 233 0.01253 c.37.1.1,g.41.2.1 31894,45195 1p3jA 217 0.01393 c.37.1.1,g.41.2.1 94022,94023 2ak3A 226 0.01455 c.37.1.1,g.41.2.1 31892,45193 1xrjA 261 0.01464 c.37.1.6 122256 1nksA 194 0.01703 c.37.1.1 31886 1zinA 217 0.02025 c.37.1.1,g.41.2.1 31915,45178 1nn5A 215 0.02406 c.37.1.1 85892 1akyA 220 0.02469 c.37.1.1,g.41.2.1 31896,45197 1viaA 175 0.02870 c.37.1.2 100754 3be4A 217 0.03446 2qt1A 207 0.03536 2iyvA 184 0.03626 c.37.1.2 137812 3crrA 323 0.03811 1zuhA 168 0.04077 1ltqA 301 0.04176 c.108.1.9,c.37.1.1 78208,78209 2bdtA 189 0.04662 c.37.1.25 128344 3c8uA 208 0.05586 1kagA 173 0.06624 c.37.1.2 72249 2rhmA 193 0.07805 2pezA 179 0.09846 2yvuA 186 0.1076 1s96A 219 0.1298 c.37.1.1 98740 1rkbA 173 0.1352 c.37.1.1 111854 1m7gA 211 0.1360 c.37.1.4 78724 1ly1A 181 0.2047 c.37.1.1 74334 2pt5A 168 0.2579 1sq5A 308 0.3305 c.37.1.6 105882 2grjA 192 0.3320 2ze7A 253 0.3428 2ga8A 359 0.5216 2f1rA 171 1.060 1xjcA 169 1.125 c.37.1.10 115387 1esmA 316 1.310 c.37.1.6 31953 1dekA 241 1.426 c.37.1.1 31842 1xx6A 191 1.473 c.37.1.24,g.39.1.14 116139,116140 2p5tB 253 1.530 2orwA 184 1.987 1a7jA 290 2.196 c.37.1.6 31952 1a7j 290 2.671 1rz3A 201 2.988 c.37.1.6 98132 1np6A 174 3.018 c.37.1.10 85954 2r44A 331 3.378 2d2eA 250 3.476 1nijA 318 3.494 c.37.1.10,d.237.1.1 85741,85742 2p67A 341 3.684 1gvnB 287 4.695 c.37.1.21 76354 1z47A 355 5.290 2ff7A 247 5.341 c.37.1.12 133377 1in4A 334 6.023 a.4.5.11,c.37.1.20 62597,62598 2qi9C 249 6.217 2ixeA 271 6.221 2vhjA 331 6.659 2pmkA 243 7.250 2eyuA 261 7.363 2r2aA 199 7.513 2bbsA 290 7.765 2ihyA 279 7.817 2pzeA 229 7.929 1ji0A 240 8.131 c.37.1.12 71665 1zu4A 320 8.204 1vplA 256 8.513 c.37.1.12 113966 3b9qA 302 8.822 2chgA 226 8.831 1w5tA 412 9.003 a.4.5.11,c.37.1.20 114255,114256 2fh5B 214 9.044 c.37.1.8 133478 2it1A 362 9.164 1sgwA 214 9.678 c.37.1.12 105541 1ye8A 178 10.48 c.37.1.11 123010 2c8vA 288 10.51 c.37.1.10 130128 1g6hA 257 10.66 c.37.1.12 60318 1l2tA 235 10.72 c.37.1.12 73514 2cbzA 237 10.76 1ihuA 589 10.77 c.37.1.10,c.37.1.10 62394,62395 2og2A 359 11.58 1r0wA 286 11.76 c.37.1.12 96754 2qm8A 337 11.87 2qy9A 309 12.25 1wcv1 257 13.02 1yqtA 538 13.79 1sxjA 511 13.86 a.80.1.1,c.37.1.20 106081,106082 1xmiA 291 13.86 c.37.1.12 115489 1d6jA 211 13.97 c.37.1.4 31940 2gzaA 361 14.07 1e9rA 437 14.16 c.37.1.11 64827 1g8yA 279 14.35 c.37.1.11 32302 2pcjA 224 14.36 1xd8A 289 15.25 1sxjE 354 15.52 a.80.1.1,c.37.1.20 106089,106090 1xwiA 322 15.63 2cvhA 220 16.17 1w44A 331 16.25 c.37.1.11 114147 2afhE 289 17.91 c.37.1.10 126683 1xbtA 193 18.43 c.37.1.24,g.39.1.14 115080,115081 1a5t 334 18.44 2px0A 296 18.45 1rj9A 304 18.51 a.24.13.1,c.37.1.10 97553,97554 1tq4A 413 18.53 c.37.1.8 107201 2pt7A 330 18.69 1g6oA 330 18.77 c.37.1.11 32430 1j8mF 297 18.93 a.24.13.1,c.37.1.10 62742,62743 1tq6A 413 19.00 c.37.1.8 107202 1b0uA 262 19.27 c.37.1.12 32370 1htwA 158 19.62 c.37.1.18 71083 1bifA 469 19.63 c.37.1.7,c.60.1.4 31961,34003 2reb 352 20.39 1a5tA 334 20.39 a.80.1.1,c.37.1.20 18450,32423 2b8tA 223 20.45 c.37.1.24,g.39.1.14 128109,128110 1cp2A 269 21.06 c.37.1.10 32269 1g3qA 237 21.24 c.37.1.10 60237 1xewX 182 21.51 c.37.1.12 115235 2nq2C 253 21.57 1sxjC 340 22.51 a.80.1.1,c.37.1.20 106085,106086 1x6vA 630 22.62 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 1nsf 273 23.09 1oxsC 353 25.52 b.40.6.3,c.37.1.12 87519,87520 2bekA 257 25.91 1t9hA 307 26.82 b.40.4.5,c.37.1.8 112358,112359 1ls1A 295 27.07 a.24.13.1,c.37.1.10 78170,78171 2ffqA 171 27.41 2gdjA 264 28.50 c.37.1.11 135018 1d2nA 272 28.70 c.37.1.20 32428 1cr1A 296 29.19 c.37.1.11 32286 1jx2B 315 29.53 c.37.1.8 67404 2z83A 459 30.32 1wf3A 301 30.86 c.37.1.8,d.52.3.1 114574,114575 1in6A 334 31.22 a.4.5.11,c.37.1.20 62601,62602 1yrbA 262 31.24 c.37.1.10 123915 1njgA 250 32.24 c.37.1.20 85785 1oxxK 353 34.52 b.40.6.3,c.37.1.12 93715,93716 2pjzA 263 34.86 3bs4A 260 34.88 2rexB 197 36.11 2p65A 187 37.40 1nlfA 279 37.61 c.37.1.11 85850 1odfA 290 39.09 c.37.1.6 92782 1vcoA 550 39.69 c.23.16.1,c.37.1.10 108508,108509 2cxxA 190 39.75 c.37.1.8 131013 3bosA 242 40.11 2dr3A 247 40.62 1svmA 377 42.11 c.37.1.20 112126 2b8wA 328 43.09 2gxaA 274 44.11 1jbkA 195 44.43 c.37.1.20 71631 1tx4B 178 45.24 c.37.1.8 32045 1nf3A 195 45.73 c.37.1.8 85594 1kmqA 184 46.59 c.37.1.8 84412 1lv7A 257 47.51 c.37.1.20 78232 1lnzA 342 49.19 b.117.1.1,c.37.1.8 78112,78113 1vmaA 306 49.31 a.24.13.1,c.37.1.10 108887,108888 1w1wA 430 50.50 c.37.1.12 114080 1egaA 301 51.91 c.37.1.8,d.52.3.1 32150,38836 3b9pA 297 51.91 2akaB 299 52.73 c.37.1.8 126914 2g6bA 180 53.06 c.37.1.8 134701 1us8A 147 55.65 c.37.1.12 99859 1g41A 444 56.53 c.37.1.20 32450 2akaA 776 56.60 1lw7A 365 60.01 c.26.1.3,c.37.1.1 74295,74296 1tueA 212 60.30 c.37.1.20 107323 1g8fA 511 61.06 b.122.1.3,c.26.1.5,c.37.1.15 60348,60349,60350 2r6fA 972 61.25 1g291 372 61.68 2gjsA 176 62.21 c.37.1.8 135287 1w9iA 770 63.82 1xp8A 366 63.94 c.37.1.11,d.48.1.1 115735,115736 1qhlA 227 66.34 c.37.1.12 32382 2fnaA 357 66.75 a.4.5.11,c.37.1.20 133809,133810 2dykA 161 68.00 1knxA 312 69.11 c.98.2.1,c.91.1.2 77459,77460 1eg7A 557 69.28 c.37.1.10 32241 1h65A 270 69.35 c.37.1.8 65640 1u9iA 519 70.35 c.37.1.11,c.37.1.11 119637,119638 1yzqA 170 70.58 c.37.1.8 124286 2qmoA 220 70.59 2rebA 352 74.42 c.37.1.11,d.48.1.1 32282,38767 1mvwA 840 74.91 i.15.1.1 79523 2qu8A 228 76.24 1ycdA 243 77.74 2dpxA 174 81.96 1m7bA 184 83.24 c.37.1.8 74572 1ny6A 267 83.95 c.37.1.20 92321 2dbyA 368 84.10 1elkA 157 84.36 a.118.9.2 19217 1d0yA 761 85.73 b.34.3.1,c.37.1.9 24581,32178 2h17A 181 86.16 3bh0A 315 86.51 2v26A 784 86.79 1w36D 608 87.07 c.37.1.19,c.37.1.19 114128,114129 1pfvA 551 87.17 a.27.1.1,c.26.1.1,g.41.1.1 94660,94661,94662 1byi 224 87.33 1n25A 368 87.53 c.37.1.20 85264 2p71A 132 88.79 a.39.2.1 139516 1z2aA 168 89.27 c.37.1.8 124374 1ewqA 765 89.58 a.113.1.1,c.37.1.12,c.55.6.1,d.75.2.1 19069,32383,33740,39743