# List of top-scoring protein chains for t04-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2pbrA 195 1.56e-06 1znwA 207 2.55e-06 c.37.1.1 125412 4tmkA 213 3.53e-06 c.37.1.1 31930 2j41A 207 4.61e-06 2qorA 204 5.49e-06 2plrA 213 6.42e-06 2ccjA 205 7.40e-06 1z6gA 218 7.42e-06 1p5zB 263 1.01e-05 c.37.1.1 87815 1z8fA 228 1.14e-05 2bwjA 199 2.84e-05 2z0hA 197 3.04e-05 1kjwA 295 5.15e-05 b.34.2.1,c.37.1.1 68643,68644 1ex7A 186 6.87e-05 c.37.1.1 59537 1ukzA 203 6.93e-05 c.37.1.1 31840 1gtvA 214 7.06e-05 c.37.1.1 70537 1s4qA 228 9.05e-05 c.37.1.1 98507 2c95A 196 0.000140 2cdnA 201 0.000169 c.37.1.1 130289 2vp4A 230 0.000189 1ki9A 192 0.000285 c.37.1.1 84404 1qf9A 194 0.000305 c.37.1.1 31848 1of1A 376 0.000321 c.37.1.1 103924 1p6xA 334 0.000337 c.37.1.1 94195 1e2kA 331 0.000389 c.37.1.1 31854 1t0hB 224 0.000487 c.37.1.1 106208 1zm7A 230 0.000530 1oe0A 230 0.000629 c.37.1.1 92788 1ukz 203 0.000661 1t3lA 337 0.000677 b.34.2.1,c.37.1.1 106358,106359 1vhtA 218 0.000964 c.37.1.1 100700 1qhiA 366 0.001014 c.37.1.1 31860 2axpA 173 0.001205 c.37.1.1 127497 1y63A 184 0.001468 c.37.1.1 116494 1gky 187 0.001930 3tmkA 216 0.002210 c.37.1.1 31920 1qhxA 178 0.002921 c.37.1.3 31936 1kdoA 227 0.003085 c.37.1.1 68478 1ckeA 227 0.003217 c.37.1.1 31846 1khtA 192 0.003711 c.37.1.1 84401 2f6rA 281 0.004762 1knqA 175 0.005223 c.37.1.17 72786 1uj2A 252 0.006327 c.37.1.6 99452 1e4yA 214 0.006889 c.37.1.1,g.41.2.1 31901,45181 1zd8A 227 0.007602 1kgdA 180 0.008226 c.37.1.1 68582 1e6cA 173 0.008489 c.37.1.2 59296 1xrjA 261 0.008828 c.37.1.6 122256 2rgxA 206 0.009613 2eu8A 216 0.01039 1n3bA 216 0.01243 c.37.1.1 79959 2qgnA 322 0.01286 1zin 217 0.01365 2an9A 207 0.01375 c.37.1.1 127037 1jjvA 206 0.01424 c.37.1.1 71698 2ak3A 226 0.01545 c.37.1.1,g.41.2.1 31892,45193 1nksA 194 0.01654 c.37.1.1 31886 1ak2A 233 0.01804 c.37.1.1,g.41.2.1 31894,45195 1p3jA 217 0.02006 c.37.1.1,g.41.2.1 94022,94023 1zinA 217 0.02121 c.37.1.1,g.41.2.1 31915,45178 2g1kA 176 0.02821 c.37.1.2 134519 1nn5A 215 0.03040 c.37.1.1 85892 2qt1A 207 0.03131 1akyA 220 0.03335 c.37.1.1,g.41.2.1 31896,45197 2ax4A 198 0.03528 3crrA 323 0.04562 3be4A 217 0.04941 2iyvA 184 0.05178 c.37.1.2 137812 1zuhA 168 0.05938 1viaA 175 0.06307 c.37.1.2 100754 2bdtA 189 0.06785 c.37.1.25 128344 3c8uA 208 0.07640 1ltqA 301 0.08688 c.108.1.9,c.37.1.1 78208,78209 1s96A 219 0.1195 c.37.1.1 98740 1rkbA 173 0.1358 c.37.1.1 111854 2rhmA 193 0.1359 1kagA 173 0.1486 c.37.1.2 72249 2yvuA 186 0.1980 2ze7A 253 0.2233 2pezA 179 0.2272 1sq5A 308 0.3066 c.37.1.6 105882 2pt5A 168 0.3098 1m7gA 211 0.3937 c.37.1.4 78724 2ga8A 359 0.4487 1ly1A 181 0.5625 c.37.1.1 74334 2grjA 192 0.5821 1dekA 241 1.349 c.37.1.1 31842 2f1rA 171 1.410 1a7jA 290 1.519 c.37.1.6 31952 1xjcA 169 1.526 c.37.1.10 115387 2p5tB 253 1.738 1esmA 316 1.840 c.37.1.6 31953 1xx6A 191 2.038 c.37.1.24,g.39.1.14 116139,116140 1a7j 290 2.162 2orwA 184 2.707 2d2eA 250 2.884 2r44A 331 3.051 1rz3A 201 3.085 c.37.1.6 98132 1z47A 355 3.619 2ff7A 247 4.644 c.37.1.12 133377 2p67A 341 4.655 2qi9C 249 4.729 2ixeA 271 5.142 1in4A 334 5.146 a.4.5.11,c.37.1.20 62597,62598 1np6A 174 5.468 c.37.1.10 85954 2ihyA 279 5.548 1nijA 318 5.588 c.37.1.10,d.237.1.1 85741,85742 2it1A 362 6.019 1vplA 256 6.081 c.37.1.12 113966 1ji0A 240 6.364 c.37.1.12 71665 2bbsA 290 6.399 1sgwA 214 6.592 c.37.1.12 105541 2r2aA 199 6.628 2pmkA 243 6.641 2vhjA 331 6.937 2chgA 226 7.433 1xmiA 291 7.875 c.37.1.12 115489 1zu4A 320 7.876 1r0wA 286 8.049 c.37.1.12 96754 1g6hA 257 8.271 c.37.1.12 60318 1gvnB 287 8.355 c.37.1.21 76354 2eyuA 261 8.544 2fh5B 214 8.772 c.37.1.8 133478 3b9qA 302 8.823 2pzeA 229 8.933 1sxjE 354 9.813 a.80.1.1,c.37.1.20 106089,106090 2afhE 289 9.817 c.37.1.10 126683 1ihuA 589 9.873 c.37.1.10,c.37.1.10 62394,62395 2qm8A 337 9.892 2c8vA 288 10.42 c.37.1.10 130128 1g8yA 279 10.95 c.37.1.11 32302 2pcjA 224 11.06 1l2tA 235 11.26 c.37.1.12 73514 1xwiA 322 11.52 1rj9A 304 12.22 a.24.13.1,c.37.1.10 97553,97554 1e9rA 437 12.47 c.37.1.11 64827 2qy9A 309 12.71 2og2A 359 12.98 2nq2C 253 13.33 1xd8A 289 13.74 1w5tA 412 14.14 a.4.5.11,c.37.1.20 114255,114256 2cbzA 237 14.31 1w44A 331 15.27 c.37.1.11 114147 1sxjA 511 15.62 a.80.1.1,c.37.1.20 106081,106082 1wf3A 301 15.86 c.37.1.8,d.52.3.1 114574,114575 1ye8A 178 15.96 c.37.1.11 123010 1xewX 182 16.00 c.37.1.12 115235 1d6jA 211 16.52 c.37.1.4 31940 2gzaA 361 16.52 1g41A 444 16.65 c.37.1.20 32450 1tq6A 413 16.74 c.37.1.8 107202 1g6oA 330 17.62 c.37.1.11 32430 1yqtA 538 17.63 2px0A 296 17.96 1b0uA 262 18.09 c.37.1.12 32370 1cp2A 269 19.96 c.37.1.10 32269 1jx2B 315 19.96 c.37.1.8 67404 1nsf 273 20.08 1odfA 290 21.31 c.37.1.6 92782 1in6A 334 22.34 a.4.5.11,c.37.1.20 62601,62602 2reb 352 22.47 1tq4A 413 23.06 c.37.1.8 107201 2b8tA 223 23.43 c.37.1.24,g.39.1.14 128109,128110 1wcv1 257 24.63 1xbtA 193 25.28 c.37.1.24,g.39.1.14 115080,115081 1yrbA 262 25.69 c.37.1.10 123915 2pt7A 330 25.90 2cvhA 220 27.19 1oxsC 353 27.64 b.40.6.3,c.37.1.12 87519,87520 1j8mF 297 27.67 a.24.13.1,c.37.1.10 62742,62743 1ls1A 295 28.14 a.24.13.1,c.37.1.10 78170,78171 2cxxA 190 28.98 c.37.1.8 131013 2z83A 459 29.38 1g3qA 237 29.65 c.37.1.10 60237 2b8wA 328 29.79 2pjzA 263 30.34 1a5t 334 30.65 2gdjA 264 33.16 c.37.1.11 135018 1sxjC 340 33.24 a.80.1.1,c.37.1.20 106085,106086 1htwA 158 33.93 c.37.1.18 71083 1knxA 312 33.97 c.98.2.1,c.91.1.2 77459,77460 1kmqA 184 34.40 c.37.1.8 84412 2bekA 257 34.64 3b9pA 297 34.98 1d2nA 272 39.44 c.37.1.20 32428 1t9hA 307 39.73 b.40.4.5,c.37.1.8 112358,112359 2fnaA 357 39.95 a.4.5.11,c.37.1.20 133809,133810 1tx4B 178 40.79 c.37.1.8 32045 2rexB 197 40.80 1svmA 377 40.87 c.37.1.20 112126 1nf3A 195 40.95 c.37.1.8 85594 1f2tA 149 41.05 c.37.1.12 32373 2p65A 187 41.59 2akaB 299 41.87 c.37.1.8 126914 1nlfA 279 42.28 c.37.1.11 85850 2ffqA 171 42.32 1a5tA 334 42.72 a.80.1.1,c.37.1.20 18450,32423 1lv7A 257 42.86 c.37.1.20 78232 1cr1A 296 43.94 c.37.1.11 32286 3bs4A 260 44.64 2qu8A 228 45.79 1vmaA 306 47.07 a.24.13.1,c.37.1.10 108887,108888 1us8A 147 47.83 c.37.1.12 99859 1oxxK 353 48.51 b.40.6.3,c.37.1.12 93715,93716 1xp8A 366 48.58 c.37.1.11,d.48.1.1 115735,115736 1m7bA 184 48.85 c.37.1.8 74572 1njgA 250 50.06 c.37.1.20 85785 1e79D 482 50.72 a.69.1.1,b.49.1.1,c.37.1.11 18272,26437,32317 2jdiD 482 51.36 a.69.1.1,b.49.1.1,c.37.1.11 138263,138264,138265 2gxaA 274 51.85 1w1wA 430 52.14 c.37.1.12 114080 1w9iA 770 53.34 1jbkA 195 53.54 c.37.1.20 71631 1lw7A 365 53.88 c.26.1.3,c.37.1.1 74295,74296 2dr3A 247 56.05 1bifA 469 56.56 c.37.1.7,c.60.1.4 31961,34003 1u9iA 519 57.65 c.37.1.11,c.37.1.11 119637,119638 1lnzA 342 58.69 b.117.1.1,c.37.1.8 78112,78113 2akaA 776 60.87 1h65A 270 61.45 c.37.1.8 65640 1qhlA 227 62.15 c.37.1.12 32382 1vcoA 550 62.68 c.23.16.1,c.37.1.10 108508,108509 1tueA 212 64.21 c.37.1.20 107323 1ni3A 392 65.94 c.37.1.8,d.15.10.2 80531,80532 1x6vA 630 66.46 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 1g291 372 67.23 1pfvA 551 69.45 a.27.1.1,c.26.1.1,g.41.1.1 94660,94661,94662 1eg7A 557 71.68 c.37.1.10 32241 2h17A 181 71.95 2dykA 161 71.95 2g6bA 180 72.71 c.37.1.8 134701 1z2aA 168 73.30 c.37.1.8 124374 1przA 252 74.30 d.265.1.3 95064 1r4aA 165 78.82 c.37.1.8 96986 2a5yB 549 78.97 1tca 317 79.03 2oblA 347 79.57 1ycdA 243 80.26 2gj8A 172 81.51 c.37.1.8 135270 2iutA 574 81.60 1mh1 186 81.75 1yzqA 170 81.98 c.37.1.8 124286 1egaA 301 82.49 c.37.1.8,d.52.3.1 32150,38836 1mvwA 840 82.83 i.15.1.1 79523 2v8oA 444 83.06 2dbyA 368 84.02 1n0wA 243 86.93 c.37.1.11 79772 3rabA 169 87.05 c.37.1.8 32018 1elkA 157 87.99 a.118.9.2 19217 2h57A 190 88.14 2c9oA 456 88.61 1ny6A 267 89.11 c.37.1.20 92321