# List of top-scoring protein chains for t04-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2pbrA 195 8.47e-07 4tmkA 213 1.84e-06 c.37.1.1 31930 1znwA 207 2.28e-06 c.37.1.1 125412 2plrA 213 3.28e-06 2ccjA 205 3.45e-06 2qorA 204 4.37e-06 1p5zB 263 4.50e-06 c.37.1.1 87815 2j41A 207 4.69e-06 1z6gA 218 6.53e-06 1z8fA 228 8.11e-06 1gtvA 214 1.48e-05 c.37.1.1 70537 2z0hA 197 1.98e-05 2bwjA 199 2.12e-05 1ex7A 186 3.72e-05 c.37.1.1 59537 1kjwA 295 4.67e-05 b.34.2.1,c.37.1.1 68643,68644 1ukzA 203 7.66e-05 c.37.1.1 31840 2vp4A 230 9.88e-05 1s4qA 228 0.000111 c.37.1.1 98507 2cdnA 201 0.000124 c.37.1.1 130289 2c95A 196 0.000148 1ki9A 192 0.000171 c.37.1.1 84404 1qf9A 194 0.000184 c.37.1.1 31848 1of1A 376 0.000199 c.37.1.1 103924 1ukz 203 0.000206 1zm7A 230 0.000263 1e2kA 331 0.000273 c.37.1.1 31854 1p6xA 334 0.000275 c.37.1.1 94195 1oe0A 230 0.000292 c.37.1.1 92788 1vhtA 218 0.000473 c.37.1.1 100700 1t0hB 224 0.000501 c.37.1.1 106208 1t3lA 337 0.000563 b.34.2.1,c.37.1.1 106358,106359 1qhiA 366 0.000843 c.37.1.1 31860 1kdoA 227 0.001117 c.37.1.1 68478 2axpA 173 0.001246 c.37.1.1 127497 1y63A 184 0.001253 c.37.1.1 116494 1qhxA 178 0.001784 c.37.1.3 31936 1gky 187 0.002155 1ckeA 227 0.002356 c.37.1.1 31846 1khtA 192 0.002493 c.37.1.1 84401 3tmkA 216 0.002496 c.37.1.1 31920 1uj2A 252 0.002680 c.37.1.6 99452 1knqA 175 0.002871 c.37.1.17 72786 1e6cA 173 0.003586 c.37.1.2 59296 2f6rA 281 0.004060 1e4yA 214 0.005381 c.37.1.1,g.41.2.1 31901,45181 1zd8A 227 0.005656 1zin 217 0.008992 1n3bA 216 0.009433 c.37.1.1 79959 1nksA 194 0.009810 c.37.1.1 31886 2qgnA 322 0.01049 1kgdA 180 0.01163 c.37.1.1 68582 2rgxA 206 0.01195 2ax4A 198 0.01201 2eu8A 216 0.01238 1p3jA 217 0.01349 c.37.1.1,g.41.2.1 94022,94023 1jjvA 206 0.01586 c.37.1.1 71698 1ak2A 233 0.01616 c.37.1.1,g.41.2.1 31894,45195 2g1kA 176 0.01817 c.37.1.2 134519 2an9A 207 0.01955 c.37.1.1 127037 1zinA 217 0.02748 c.37.1.1,g.41.2.1 31915,45178 1akyA 220 0.03137 c.37.1.1,g.41.2.1 31896,45197 2ak3A 226 0.03141 c.37.1.1,g.41.2.1 31892,45193 2bdtA 189 0.03164 c.37.1.25 128344 2rhmA 193 0.03341 1xrjA 261 0.03447 c.37.1.6 122256 1ltqA 301 0.04037 c.108.1.9,c.37.1.1 78208,78209 3crrA 323 0.04222 1viaA 175 0.04545 c.37.1.2 100754 1nn5A 215 0.04805 c.37.1.1 85892 2iyvA 184 0.04994 c.37.1.2 137812 3be4A 217 0.05203 2qt1A 207 0.05225 1zuhA 168 0.05365 2yvuA 186 0.08543 1ly1A 181 0.08752 c.37.1.1 74334 3c8uA 208 0.0999 2pezA 179 0.1008 1rkbA 173 0.1168 c.37.1.1 111854 1kagA 173 0.1433 c.37.1.2 72249 1m7gA 211 0.1724 c.37.1.4 78724 2ze7A 253 0.1745 1s96A 219 0.1847 c.37.1.1 98740 2grjA 192 0.4529 2pt5A 168 0.5748 1sq5A 308 0.6671 c.37.1.6 105882 1dekA 241 1.082 c.37.1.1 31842 1xx6A 191 1.261 c.37.1.24,g.39.1.14 116139,116140 1a7jA 290 1.435 c.37.1.6 31952 2f1rA 171 1.467 2ga8A 359 1.537 1xjcA 169 1.871 c.37.1.10 115387 1esmA 316 2.571 c.37.1.6 31953 2p5tB 253 2.614 2r44A 331 2.645 1a7j 290 2.659 2d2eA 250 2.765 2p67A 341 3.619 2orwA 184 3.621 1in4A 334 3.808 a.4.5.11,c.37.1.20 62597,62598 1nijA 318 4.101 c.37.1.10,d.237.1.1 85741,85742 1z47A 355 4.870 2ff7A 247 4.897 c.37.1.12 133377 2ixeA 271 4.911 1np6A 174 5.099 c.37.1.10 85954 2r2aA 199 5.668 1zu4A 320 5.733 2chgA 226 5.819 2pmkA 243 6.396 2vhjA 331 6.804 1vplA 256 8.028 c.37.1.12 113966 1sgwA 214 8.103 c.37.1.12 105541 1l2tA 235 8.431 c.37.1.12 73514 2bbsA 290 8.465 2pzeA 229 8.527 1gvnB 287 8.648 c.37.1.21 76354 2eyuA 261 8.659 1d6jA 211 8.831 c.37.1.4 31940 1ji0A 240 8.872 c.37.1.12 71665 1w5tA 412 9.113 a.4.5.11,c.37.1.20 114255,114256 1yqtA 538 9.127 1rz3A 201 9.241 c.37.1.6 98132 1ihuA 589 9.439 c.37.1.10,c.37.1.10 62394,62395 2cbzA 237 9.521 2ihyA 279 9.558 2qy9A 309 10.04 3b9qA 302 10.06 1g6hA 257 10.52 c.37.1.12 60318 2qi9C 249 10.91 1sxjA 511 11.13 a.80.1.1,c.37.1.20 106081,106082 1ye8A 178 11.67 c.37.1.11 123010 2it1A 362 11.86 1xwiA 322 12.10 2fh5B 214 12.11 c.37.1.8 133478 2afhE 289 12.24 c.37.1.10 126683 1bifA 469 12.25 c.37.1.7,c.60.1.4 31961,34003 2pcjA 224 12.41 1e9rA 437 12.63 c.37.1.11 64827 2c8vA 288 13.02 c.37.1.10 130128 1a5t 334 13.05 1xd8A 289 13.21 1xmiA 291 13.51 c.37.1.12 115489 1r0wA 286 13.51 c.37.1.12 96754 1tq4A 413 13.88 c.37.1.8 107201 2og2A 359 13.95 2qm8A 337 14.18 1g6oA 330 14.20 c.37.1.11 32430 1sxjC 340 14.60 a.80.1.1,c.37.1.20 106085,106086 2gzaA 361 14.77 2cvhA 220 14.78 1wcv1 257 15.48 1x6vA 630 15.82 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 2b8tA 223 16.31 c.37.1.24,g.39.1.14 128109,128110 1j8mF 297 17.93 a.24.13.1,c.37.1.10 62742,62743 1g8yA 279 18.03 c.37.1.11 32302 1nsf 273 18.36 1a5tA 334 18.70 a.80.1.1,c.37.1.20 18450,32423 2nq2C 253 19.21 1d2nA 272 19.63 c.37.1.20 32428 1in6A 334 20.17 a.4.5.11,c.37.1.20 62601,62602 2cxxA 190 20.87 c.37.1.8 131013 1sxjE 354 21.24 a.80.1.1,c.37.1.20 106089,106090 1njgA 250 22.18 c.37.1.20 85785 1lv7A 257 22.79 c.37.1.20 78232 2reb 352 22.88 1ls1A 295 22.95 a.24.13.1,c.37.1.10 78170,78171 2z83A 459 23.22 1oxxK 353 23.45 b.40.6.3,c.37.1.12 93715,93716 1oxsC 353 23.52 b.40.6.3,c.37.1.12 87519,87520 2gdjA 264 23.75 c.37.1.11 135018 1cp2A 269 24.14 c.37.1.10 32269 1htwA 158 24.49 c.37.1.18 71083 1w78A 422 25.44 1xbtA 193 25.61 c.37.1.24,g.39.1.14 115080,115081 1w44A 331 25.70 c.37.1.11 114147 2pt7A 330 26.41 1wf3A 301 27.13 c.37.1.8,d.52.3.1 114574,114575 1b0uA 262 28.13 c.37.1.12 32370 2p65A 187 29.06 2pjzA 263 29.27 1vmaA 306 29.28 a.24.13.1,c.37.1.10 108887,108888 1rj9A 304 29.36 a.24.13.1,c.37.1.10 97553,97554 1t9hA 307 31.25 b.40.4.5,c.37.1.8 112358,112359 2px0A 296 32.17 1xewX 182 32.84 c.37.1.12 115235 1jx2B 315 33.45 c.37.1.8 67404 2ffqA 171 34.00 1nf3A 195 34.36 c.37.1.8 85594 1tx4B 178 34.84 c.37.1.8 32045 1kmqA 184 35.96 c.37.1.8 84412 1svmA 377 35.97 c.37.1.20 112126 2akaB 299 36.48 c.37.1.8 126914 1g3qA 237 38.27 c.37.1.10 60237 1tq6A 413 38.68 c.37.1.8 107202 2gxaA 274 38.87 1g291 372 40.86 1tueA 212 41.22 c.37.1.20 107323 2fnaA 357 41.39 a.4.5.11,c.37.1.20 133809,133810 1yrbA 262 41.75 c.37.1.10 123915 3b9pA 297 41.92 3bs4A 260 42.10 2g6bA 180 43.23 c.37.1.8 134701 2bekA 257 44.07 1g41A 444 45.04 c.37.1.20 32450 1us8A 147 45.14 c.37.1.12 99859 1qhlA 227 45.27 c.37.1.12 32382 1pujA 282 46.32 c.37.1.8 88294 1knxA 312 46.44 c.98.2.1,c.91.1.2 77459,77460 1cr1A 296 49.00 c.37.1.11 32286 1bif 469 52.46 2r6fA 972 54.37 1u0jA 267 56.64 c.37.1.20 107546 1jbkA 195 56.83 c.37.1.20 71631 2rexB 197 58.06 1egaA 301 58.89 c.37.1.8,d.52.3.1 32150,38836 1g8fA 511 60.81 b.122.1.3,c.26.1.5,c.37.1.15 60348,60349,60350 2b8wA 328 60.93 1m7bA 184 60.98 c.37.1.8 74572 1r4aA 165 61.50 c.37.1.8 96986 1w1wA 430 62.39 c.37.1.12 114080 1xp8A 366 63.00 c.37.1.11,d.48.1.1 115735,115736 1tca 317 63.17 1z2aA 168 64.07 c.37.1.8 124374 2gjsA 176 66.34 c.37.1.8 135287 2h17A 181 67.03 1nlfA 279 69.21 c.37.1.11 85850 2dykA 161 70.17 1w4rA 195 70.22 3rabA 169 70.26 c.37.1.8 32018 1kskA 234 70.52 d.66.1.5,d.265.1.3 72920,90389 2g1uA 155 71.84 1lnzA 342 73.70 b.117.1.1,c.37.1.8 78112,78113 2hf9A 226 74.65 2dpxA 174 74.91 2c2hA 192 75.94 c.37.1.8 129668 1id1A 153 76.47 c.2.1.9 62286 1elkA 157 76.86 a.118.9.2 19217 1u9iA 519 78.22 c.37.1.11,c.37.1.11 119637,119638 1azsC 388 78.34 a.66.1.1,c.37.1.8 18203,32086 1odfA 290 78.59 c.37.1.6 92782 1lw7A 365 78.82 c.26.1.3,c.37.1.1 74295,74296 1e8cA 498 79.93 c.98.1.1,c.59.1.1,c.72.2.1 59377,59378,59379 2qmoA 220 80.99 1f2tA 149 81.42 c.37.1.12 32373 1h65A 270 81.69 c.37.1.8 65640 1mh1 186 84.80 2zejA 184 84.84 1z0jA 170 86.78 c.37.1.8 124319 2h57A 190 87.60 2oap1 511 87.77 1hw7A 255 87.84 d.193.1.1 61297 2dr3A 247 87.96 2a5yB 549 88.19 2yv5A 302 88.37 1w9iA 770 88.87 2hxsA 178 89.48