# List of top-scoring protein chains for t04-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2pbrA 195 1.32e-06 1znwA 207 1.76e-06 c.37.1.1 125412 4tmkA 213 2.70e-06 c.37.1.1 31930 2j41A 207 2.94e-06 2qorA 204 4.56e-06 2plrA 213 5.63e-06 2ccjA 205 6.07e-06 1p5zB 263 6.58e-06 c.37.1.1 87815 1z6gA 218 8.86e-06 1z8fA 228 1.26e-05 2bwjA 199 2.31e-05 2z0hA 197 2.57e-05 1kjwA 295 2.61e-05 b.34.2.1,c.37.1.1 68643,68644 1gtvA 214 2.87e-05 c.37.1.1 70537 1ukzA 203 6.83e-05 c.37.1.1 31840 1ex7A 186 7.00e-05 c.37.1.1 59537 1s4qA 228 9.22e-05 c.37.1.1 98507 2c95A 196 0.000119 2cdnA 201 0.000134 c.37.1.1 130289 2vp4A 230 0.000221 1ki9A 192 0.000271 c.37.1.1 84404 1qf9A 194 0.000352 c.37.1.1 31848 1of1A 376 0.000358 c.37.1.1 103924 1p6xA 334 0.000367 c.37.1.1 94195 1t3lA 337 0.000375 b.34.2.1,c.37.1.1 106358,106359 1zm7A 230 0.000418 1oe0A 230 0.000455 c.37.1.1 92788 1e2kA 331 0.000460 c.37.1.1 31854 1t0hB 224 0.000535 c.37.1.1 106208 1ukz 203 0.000668 1vhtA 218 0.000834 c.37.1.1 100700 1qhiA 366 0.001184 c.37.1.1 31860 2axpA 173 0.001504 c.37.1.1 127497 3tmkA 216 0.001744 c.37.1.1 31920 1y63A 184 0.002030 c.37.1.1 116494 1kdoA 227 0.002517 c.37.1.1 68478 1qhxA 178 0.003280 c.37.1.3 31936 1gky 187 0.003442 1khtA 192 0.003893 c.37.1.1 84401 1ckeA 227 0.004103 c.37.1.1 31846 1kgdA 180 0.004128 c.37.1.1 68582 1uj2A 252 0.005512 c.37.1.6 99452 2f6rA 281 0.005920 1e4yA 214 0.006267 c.37.1.1,g.41.2.1 31901,45181 1knqA 175 0.006951 c.37.1.17 72786 1zd8A 227 0.007396 1e6cA 173 0.009329 c.37.1.2 59296 1xrjA 261 0.009524 c.37.1.6 122256 1n3bA 216 0.009749 c.37.1.1 79959 2eu8A 216 0.01064 2rgxA 206 0.01233 2qgnA 322 0.01249 1ak2A 233 0.01426 c.37.1.1,g.41.2.1 31894,45195 2an9A 207 0.01446 c.37.1.1 127037 1nksA 194 0.01486 c.37.1.1 31886 1jjvA 206 0.01513 c.37.1.1 71698 2g1kA 176 0.01536 c.37.1.2 134519 1zin 217 0.01696 2ak3A 226 0.02143 c.37.1.1,g.41.2.1 31892,45193 1zinA 217 0.02347 c.37.1.1,g.41.2.1 31915,45178 1p3jA 217 0.02450 c.37.1.1,g.41.2.1 94022,94023 1akyA 220 0.02608 c.37.1.1,g.41.2.1 31896,45197 2iyvA 184 0.02916 c.37.1.2 137812 2ax4A 198 0.02962 1nn5A 215 0.03890 c.37.1.1 85892 3be4A 217 0.04394 2qt1A 207 0.05256 3crrA 323 0.05329 1viaA 175 0.05456 c.37.1.2 100754 1zuhA 168 0.05785 2bdtA 189 0.06390 c.37.1.25 128344 2rhmA 193 0.06557 1kagA 173 0.1024 c.37.1.2 72249 1ltqA 301 0.1045 c.108.1.9,c.37.1.1 78208,78209 3c8uA 208 0.1114 1s96A 219 0.1618 c.37.1.1 98740 2yvuA 186 0.1848 2pezA 179 0.1915 1rkbA 173 0.2327 c.37.1.1 111854 1m7gA 211 0.2655 c.37.1.4 78724 2ze7A 253 0.3884 2pt5A 168 0.4142 1sq5A 308 0.5204 c.37.1.6 105882 1ly1A 181 0.5753 c.37.1.1 74334 2grjA 192 0.6376 2ga8A 359 0.8013 2f1rA 171 1.498 1xx6A 191 1.810 c.37.1.24,g.39.1.14 116139,116140 1a7jA 290 1.884 c.37.1.6 31952 1dekA 241 2.108 c.37.1.1 31842 1a7j 290 2.276 2orwA 184 2.282 1esmA 316 2.412 c.37.1.6 31953 2r44A 331 2.732 1xjcA 169 3.688 c.37.1.10 115387 2p5tB 253 3.833 2d2eA 250 4.544 1np6A 174 5.220 c.37.1.10 85954 2ff7A 247 6.227 c.37.1.12 133377 2qi9C 249 6.728 2ihyA 279 6.951 1in4A 334 7.311 a.4.5.11,c.37.1.20 62597,62598 2p67A 341 7.370 1nijA 318 7.430 c.37.1.10,d.237.1.1 85741,85742 1z47A 355 7.449 2ixeA 271 7.648 1sxjE 354 8.108 a.80.1.1,c.37.1.20 106089,106090 2vhjA 331 8.139 2r2aA 199 8.365 1vplA 256 8.567 c.37.1.12 113966 2bbsA 290 8.679 1ji0A 240 8.704 c.37.1.12 71665 1e9rA 437 9.487 c.37.1.11 64827 2chgA 226 9.553 1l2tA 235 10.26 c.37.1.12 73514 1r0wA 286 10.55 c.37.1.12 96754 1sgwA 214 10.58 c.37.1.12 105541 2pmkA 243 10.80 1rz3A 201 11.06 c.37.1.6 98132 1w5tA 412 11.30 a.4.5.11,c.37.1.20 114255,114256 1ihuA 589 11.53 c.37.1.10,c.37.1.10 62394,62395 2eyuA 261 11.84 2pzeA 229 12.81 1g6hA 257 12.83 c.37.1.12 60318 2it1A 362 12.87 2pcjA 224 12.99 1zu4A 320 13.61 2c8vA 288 13.75 c.37.1.10 130128 1xmiA 291 14.06 c.37.1.12 115489 2fh5B 214 14.08 c.37.1.8 133478 2afhE 289 14.29 c.37.1.10 126683 2qm8A 337 14.35 1gvnB 287 15.76 c.37.1.21 76354 2qy9A 309 15.98 3b9qA 302 16.49 1sxjA 511 16.52 a.80.1.1,c.37.1.20 106081,106082 1xd8A 289 16.63 1g8yA 279 16.71 c.37.1.11 32302 1d6jA 211 17.10 c.37.1.4 31940 2cbzA 237 18.60 1wcv1 257 18.64 1g41A 444 19.03 c.37.1.20 32450 2nq2C 253 19.91 1a5t 334 20.45 1xewX 182 20.72 c.37.1.12 115235 1yqtA 538 21.25 1xwiA 322 22.11 2b8tA 223 23.05 c.37.1.24,g.39.1.14 128109,128110 1in6A 334 23.08 a.4.5.11,c.37.1.20 62601,62602 2px0A 296 24.37 2gzaA 361 24.89 1w44A 331 24.98 c.37.1.11 114147 1jx2B 315 25.53 c.37.1.8 67404 2reb 352 26.98 2z83A 459 27.34 1tq4A 413 27.71 c.37.1.8 107201 2pjzA 263 27.95 2og2A 359 28.25 1ye8A 178 28.97 c.37.1.11 123010 1rj9A 304 29.23 a.24.13.1,c.37.1.10 97553,97554 1g6oA 330 29.54 c.37.1.11 32430 1b0uA 262 30.43 c.37.1.12 32370 1cp2A 269 30.46 c.37.1.10 32269 1nsf 273 30.60 1ls1A 295 32.09 a.24.13.1,c.37.1.10 78170,78171 1a5tA 334 33.20 a.80.1.1,c.37.1.20 18450,32423 1t9hA 307 34.69 b.40.4.5,c.37.1.8 112358,112359 2fnaA 357 35.34 a.4.5.11,c.37.1.20 133809,133810 1xbtA 193 35.86 c.37.1.24,g.39.1.14 115080,115081 1tca 317 35.94 2cxxA 190 36.08 c.37.1.8 131013 1htwA 158 36.17 c.37.1.18 71083 2pt7A 330 38.75 2akaB 299 38.94 c.37.1.8 126914 3b9pA 297 40.71 1kmqA 184 40.83 c.37.1.8 84412 1oxsC 353 40.86 b.40.6.3,c.37.1.12 87519,87520 2b8wA 328 41.19 1d2nA 272 41.70 c.37.1.20 32428 2p65A 187 41.96 1knxA 312 42.37 c.98.2.1,c.91.1.2 77459,77460 2bekA 257 42.75 1x6vA 630 43.51 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 1yrbA 262 43.59 c.37.1.10 123915 1tx4B 178 44.01 c.37.1.8 32045 1qhlA 227 44.47 c.37.1.12 32382 1us8A 147 44.52 c.37.1.12 99859 1njgA 250 44.83 c.37.1.20 85785 1g3qA 237 44.93 c.37.1.10 60237 1lnzA 342 45.88 b.117.1.1,c.37.1.8 78112,78113 1bifA 469 47.49 c.37.1.7,c.60.1.4 31961,34003 2cvhA 220 47.90 1wf3A 301 48.52 c.37.1.8,d.52.3.1 114574,114575 1lv7A 257 48.93 c.37.1.20 78232 1oxxK 353 49.44 b.40.6.3,c.37.1.12 93715,93716 1u9iA 519 49.48 c.37.1.11,c.37.1.11 119637,119638 1nf3A 195 50.36 c.37.1.8 85594 1j8mF 297 52.65 a.24.13.1,c.37.1.10 62742,62743 1lw7A 365 55.01 c.26.1.3,c.37.1.1 74295,74296 3bs4A 260 56.53 1kskA 234 57.97 d.66.1.5,d.265.1.3 72920,90389 2rexB 197 58.11 1svmA 377 58.34 c.37.1.20 112126 1w78A 422 58.72 1h65A 270 61.43 c.37.1.8 65640 2g6bA 180 61.54 c.37.1.8 134701 1sxjC 340 62.79 a.80.1.1,c.37.1.20 106085,106086 1w1wA 430 65.36 c.37.1.12 114080 2ffqA 171 65.61 1m7bA 184 67.48 c.37.1.8 74572 2gdjA 264 68.98 c.37.1.11 135018 1cr1A 296 69.31 c.37.1.11 32286 1nlfA 279 72.54 c.37.1.11 85850 1z2aA 168 74.88 c.37.1.8 124374 2qu8A 228 79.02 1tq6A 413 79.62 c.37.1.8 107202 2r6fA 972 80.11 1w9iA 770 81.14 2dr3A 247 81.46 1pfvA 551 82.87 a.27.1.1,c.26.1.1,g.41.1.1 94660,94661,94662 1ny6A 267 82.92 c.37.1.20 92321 1przA 252 83.60 d.265.1.3 95064 2h17A 181 84.00 1jbkA 195 84.30 c.37.1.20 71631 1odfA 290 87.26 c.37.1.6 92782 1egaA 301 88.95 c.37.1.8,d.52.3.1 32150,38836