# List of top-scoring protein chains for t04-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2pbrA 195 4.33e-07 1znwA 207 7.92e-07 c.37.1.1 125412 4tmkA 213 1.02e-06 c.37.1.1 31930 2j41A 207 1.57e-06 2plrA 213 2.05e-06 2qorA 204 2.15e-06 2ccjA 205 2.18e-06 1p5zB 263 2.44e-06 c.37.1.1 87815 1z6gA 218 2.77e-06 1z8fA 228 4.58e-06 1gtvA 214 7.42e-06 c.37.1.1 70537 2bwjA 199 8.92e-06 2z0hA 197 9.76e-06 1kjwA 295 1.22e-05 b.34.2.1,c.37.1.1 68643,68644 1ex7A 186 2.69e-05 c.37.1.1 59537 1ukzA 203 3.37e-05 c.37.1.1 31840 2cdnA 201 3.78e-05 c.37.1.1 130289 2c95A 196 5.21e-05 1s4qA 228 5.33e-05 c.37.1.1 98507 2vp4A 230 6.62e-05 1qf9A 194 0.000121 c.37.1.1 31848 1ki9A 192 0.000137 c.37.1.1 84404 1zm7A 230 0.000156 1oe0A 230 0.000158 c.37.1.1 92788 1ukz 203 0.000166 1of1A 376 0.000169 c.37.1.1 103924 1e2kA 331 0.000202 c.37.1.1 31854 1t3lA 337 0.000210 b.34.2.1,c.37.1.1 106358,106359 1p6xA 334 0.000232 c.37.1.1 94195 1t0hB 224 0.000295 c.37.1.1 106208 1vhtA 218 0.000341 c.37.1.1 100700 1qhiA 366 0.000429 c.37.1.1 31860 1y63A 184 0.000879 c.37.1.1 116494 2axpA 173 0.000980 c.37.1.1 127497 3tmkA 216 0.001008 c.37.1.1 31920 1gky 187 0.001625 1kdoA 227 0.001819 c.37.1.1 68478 1ckeA 227 0.001923 c.37.1.1 31846 1khtA 192 0.001997 c.37.1.1 84401 1e4yA 214 0.002004 c.37.1.1,g.41.2.1 31901,45181 1qhxA 178 0.002062 c.37.1.3 31936 1knqA 175 0.002520 c.37.1.17 72786 1zd8A 227 0.003026 1uj2A 252 0.003088 c.37.1.6 99452 1xrjA 261 0.003138 c.37.1.6 122256 2f6rA 281 0.003237 1kgdA 180 0.003831 c.37.1.1 68582 1e6cA 173 0.004062 c.37.1.2 59296 1zin 217 0.004276 2eu8A 216 0.004281 2rgxA 206 0.004989 1n3bA 216 0.005281 c.37.1.1 79959 1nksA 194 0.006263 c.37.1.1 31886 2an9A 207 0.007067 c.37.1.1 127037 1ak2A 233 0.007409 c.37.1.1,g.41.2.1 31894,45195 2qgnA 322 0.008120 2g1kA 176 0.008771 c.37.1.2 134519 2ak3A 226 0.008850 c.37.1.1,g.41.2.1 31892,45193 1p3jA 217 0.009022 c.37.1.1,g.41.2.1 94022,94023 1jjvA 206 0.009520 c.37.1.1 71698 1zinA 217 0.01062 c.37.1.1,g.41.2.1 31915,45178 1akyA 220 0.01073 c.37.1.1,g.41.2.1 31896,45197 2ax4A 198 0.01618 3be4A 217 0.01808 2iyvA 184 0.01928 c.37.1.2 137812 1nn5A 215 0.01944 c.37.1.1 85892 2qt1A 207 0.02501 1zuhA 168 0.02823 3crrA 323 0.02854 2bdtA 189 0.04078 c.37.1.25 128344 1viaA 175 0.04119 c.37.1.2 100754 1ltqA 301 0.04882 c.108.1.9,c.37.1.1 78208,78209 3c8uA 208 0.05372 1kagA 173 0.06058 c.37.1.2 72249 2rhmA 193 0.06071 1s96A 219 0.09090 c.37.1.1 98740 2yvuA 186 0.09349 2pezA 179 0.0999 1rkbA 173 0.1004 c.37.1.1 111854 1m7gA 211 0.1767 c.37.1.4 78724 1ly1A 181 0.1923 c.37.1.1 74334 2grjA 192 0.2431 2ze7A 253 0.2444 2pt5A 168 0.2688 1sq5A 308 0.4625 c.37.1.6 105882 2ga8A 359 0.4750 2f1rA 171 0.8875 1a7jA 290 0.9216 c.37.1.6 31952 1xx6A 191 1.031 c.37.1.24,g.39.1.14 116139,116140 1a7j 290 1.313 2orwA 184 1.432 1xjcA 169 1.444 c.37.1.10 115387 1dekA 241 1.500 c.37.1.1 31842 1esmA 316 1.609 c.37.1.6 31953 2p5tB 253 1.735 2d2eA 250 2.367 1np6A 174 2.472 c.37.1.10 85954 2p67A 341 2.665 2r44A 331 2.834 1nijA 318 3.244 c.37.1.10,d.237.1.1 85741,85742 1z47A 355 3.876 1rz3A 201 3.979 c.37.1.6 98132 1in4A 334 4.090 a.4.5.11,c.37.1.20 62597,62598 2r2aA 199 4.404 2ixeA 271 5.067 1gvnB 287 5.091 c.37.1.21 76354 1w5tA 412 5.115 a.4.5.11,c.37.1.20 114255,114256 2vhjA 331 5.197 2ff7A 247 5.639 c.37.1.12 133377 1yqtA 538 5.673 1vplA 256 6.401 c.37.1.12 113966 2qi9C 249 6.475 2chgA 226 6.799 2eyuA 261 6.847 1l2tA 235 6.978 c.37.1.12 73514 1ji0A 240 7.222 c.37.1.12 71665 2pmkA 243 7.240 3b9qA 302 7.255 1sxjE 354 7.555 a.80.1.1,c.37.1.20 106089,106090 1e9rA 437 7.590 c.37.1.11 64827 2it1A 362 7.681 1ihuA 589 7.791 c.37.1.10,c.37.1.10 62394,62395 2pzeA 229 7.815 2ihyA 279 7.919 2bbsA 290 7.995 1zu4A 320 8.212 2pcjA 224 8.482 2fh5B 214 8.635 c.37.1.8 133478 1sgwA 214 8.767 c.37.1.12 105541 1g6hA 257 9.171 c.37.1.12 60318 1xmiA 291 9.585 c.37.1.12 115489 2qm8A 337 9.652 2cbzA 237 9.864 1sxjA 511 9.870 a.80.1.1,c.37.1.20 106081,106082 1r0wA 286 9.894 c.37.1.12 96754 2c8vA 288 10.93 c.37.1.10 130128 1g8yA 279 11.34 c.37.1.11 32302 2z83A 459 12.14 1ye8A 178 12.23 c.37.1.11 123010 1a5t 334 12.56 2og2A 359 13.51 2b8tA 223 13.59 c.37.1.24,g.39.1.14 128109,128110 2afhE 289 13.75 c.37.1.10 126683 1in6A 334 13.89 a.4.5.11,c.37.1.20 62601,62602 1wcv1 257 13.99 1d6jA 211 14.97 c.37.1.4 31940 1xewX 182 15.12 c.37.1.12 115235 1w44A 331 15.24 c.37.1.11 114147 2gzaA 361 15.33 1g41A 444 15.71 c.37.1.20 32450 2qy9A 309 16.06 1jx2B 315 16.59 c.37.1.8 67404 1xd8A 289 16.91 1x6vA 630 18.15 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 1bifA 469 18.16 c.37.1.7,c.60.1.4 31961,34003 2nq2C 253 18.46 2reb 352 18.69 1g6oA 330 18.90 c.37.1.11 32430 2r6fA 972 19.81 1xbtA 193 20.01 c.37.1.24,g.39.1.14 115080,115081 2px0A 296 20.12 1xwiA 322 20.25 1nsf 273 20.51 1tq4A 413 21.02 c.37.1.8 107201 1sxjC 340 21.41 a.80.1.1,c.37.1.20 106085,106086 1ls1A 295 21.74 a.24.13.1,c.37.1.10 78170,78171 2cvhA 220 21.86 1cp2A 269 22.00 c.37.1.10 32269 1b0uA 262 22.45 c.37.1.12 32370 1njgA 250 22.54 c.37.1.20 85785 1knxA 312 22.86 c.98.2.1,c.91.1.2 77459,77460 1rj9A 304 22.96 a.24.13.1,c.37.1.10 97553,97554 1kmqA 184 24.04 c.37.1.8 84412 2pjzA 263 24.21 2cxxA 190 24.26 c.37.1.8 131013 1a5tA 334 24.74 a.80.1.1,c.37.1.20 18450,32423 1tx4B 178 24.80 c.37.1.8 32045 1us8A 147 25.58 c.37.1.12 99859 1d2nA 272 25.63 c.37.1.20 32428 1t9hA 307 26.52 b.40.4.5,c.37.1.8 112358,112359 1lnzA 342 27.78 b.117.1.1,c.37.1.8 78112,78113 2b8wA 328 28.06 1j8mF 297 29.48 a.24.13.1,c.37.1.10 62742,62743 1lv7A 257 29.87 c.37.1.20 78232 1oxsC 353 30.08 b.40.6.3,c.37.1.12 87519,87520 2pt7A 330 30.54 2gdjA 264 31.21 c.37.1.11 135018 2fnaA 357 31.77 a.4.5.11,c.37.1.20 133809,133810 1yrbA 262 31.99 c.37.1.10 123915 3bs4A 260 32.39 1nf3A 195 32.48 c.37.1.8 85594 1htwA 158 32.93 c.37.1.18 71083 1nlfA 279 34.40 c.37.1.11 85850 2p65A 187 35.35 2dr3A 247 35.43 2rexB 197 35.59 1oxxK 353 36.23 b.40.6.3,c.37.1.12 93715,93716 2akaB 299 36.78 c.37.1.8 126914 1m7bA 184 36.80 c.37.1.8 74572 2bekA 257 37.60 1tq6A 413 37.85 c.37.1.8 107202 2g6bA 180 37.98 c.37.1.8 134701 1u9iA 519 39.58 c.37.1.11,c.37.1.11 119637,119638 1g3qA 237 40.68 c.37.1.10 60237 1qhlA 227 40.82 c.37.1.12 32382 1tueA 212 41.13 c.37.1.20 107323 3b9pA 297 42.48 1tca 317 44.52 1jbkA 195 45.12 c.37.1.20 71631 1w1wA 430 45.56 c.37.1.12 114080 1wf3A 301 47.67 c.37.1.8,d.52.3.1 114574,114575 1f2tA 149 48.87 c.37.1.12 32373 1w78A 422 50.42 1svmA 377 51.50 c.37.1.20 112126 2gj8A 172 52.43 c.37.1.8 135270 1w9iA 770 52.79 2ffqA 171 53.24 2gxaA 274 53.51 1ycdA 243 56.31 1cr1A 296 56.43 c.37.1.11 32286 1odfA 290 57.64 c.37.1.6 92782 2v8oA 444 58.42 1eg7A 557 60.50 c.37.1.10 32241 1pfvA 551 60.59 a.27.1.1,c.26.1.1,g.41.1.1 94660,94661,94662 1lw7A 365 61.73 c.26.1.3,c.37.1.1 74295,74296 3bh0A 315 61.77 1n0wA 243 62.63 c.37.1.11 79772 1vmaA 306 63.18 a.24.13.1,c.37.1.10 108887,108888 1z2aA 168 66.02 c.37.1.8 124374 2akaA 776 67.04 1mh1 186 68.10 2dpxA 174 68.83 2qu8A 228 71.58 1vcoA 550 72.28 c.23.16.1,c.37.1.10 108508,108509 1byi 224 72.49 1egaA 301 72.86 c.37.1.8,d.52.3.1 32150,38836 2f9lA 199 73.96 c.37.1.8 133166 1z0jA 170 75.54 c.37.1.8 124319 2h17A 181 76.00 1d0yA 761 79.64 b.34.3.1,c.37.1.9 24581,32178 1g8fA 511 80.09 b.122.1.3,c.26.1.5,c.37.1.15 60348,60349,60350 1g291 372 80.51 1h65A 270 81.47 c.37.1.8 65640 2v26A 784 82.75 2iutA 574 85.63 2dykA 161 89.69 3bosA 242 89.92